prot_Ecto-sp13_S_contig7964.19263.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7964.19263.1
Unique Nameprot_Ecto-sp13_S_contig7964.19263.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length53
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7964.19263.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.700e-19
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0 
Query:    3 DPPGDCLRIRLVVAVLEGCGSYFVRGAGLDKLSKFLGVFQR 43
            DPPGDCLRIRLVVAVLEGCGSYFVRGAGLDKLSKFLGVFQR
Sbjct: 1250 DPPGDCLRIRLVVAVLEGCGSYFVRGAGLDKLSKFLGVFQR 1290
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BLAST of mRNA_Ecto-sp13_S_contig7964.19263.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 8.720e-9
Identity = 27/41 (65.85%), Postives = 29/41 (70.73%), Query Frame = 0 
Query:    3 DPPGDCLRIRLVVAVLEGCGSYFVRGAGLDKLSKFLGVFQR 43
            DPPGDCLRIRLVV +LE C  YFV G    +L KFL  FQR
Sbjct:  817 DPPGDCLRIRLVVQLLEACAEYFVVGQSRPRLDKFLMHFQR 857
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BLAST of mRNA_Ecto-sp13_S_contig7964.19263.1 vs. uniprot
Match: A0A7S3VH95_DUNTE (Hypothetical protein (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VH95_DUNTE)

HSP 1 Score: 50.8 bits (120), Expect = 6.210e-6
Identity = 22/40 (55.00%), Postives = 27/40 (67.50%), Query Frame = 0 
Query:    3 DPPGDCLRIRLVVAVLEGCGSYFVRGAGLDKLSKFLGVFQ 42
            DPP D  RIRL++A+LEGCG YF  G    +L +FL  FQ
Sbjct:  374 DPPNDYFRIRLILALLEGCGQYFGSGPAGARLDRFLTFFQ 413
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BLAST of mRNA_Ecto-sp13_S_contig7964.19263.1 vs. uniprot
Match: A0A7J7Q907_9CHLO (Armadillo-type protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q907_9CHLO)

HSP 1 Score: 49.3 bits (116), Expect = 2.200e-5
Identity = 22/40 (55.00%), Postives = 27/40 (67.50%), Query Frame = 0 
Query:    3 DPPGDCLRIRLVVAVLEGCGSYFVRGAGLDKLSKFLGVFQ 42
            DPP D  RIRLV+A+L  CGSYF +GA   +L +FL   Q
Sbjct:  881 DPPDDFFRIRLVIALLSTCGSYFSKGAAGRRLDRFLTFMQ 920
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BLAST of mRNA_Ecto-sp13_S_contig7964.19263.1 vs. uniprot
Match: A0A383VWZ6_TETOB (Uncharacterized protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VWZ6_TETOB)

HSP 1 Score: 49.3 bits (116), Expect = 2.200e-5
Identity = 22/40 (55.00%), Postives = 27/40 (67.50%), Query Frame = 0 
Query:    3 DPPGDCLRIRLVVAVLEGCGSYFVRGAGLDKLSKFLGVFQ 42
            DPP D  RIRLV+A+L  CGSYF +GA   +L +FL   Q
Sbjct:  866 DPPDDFFRIRLVIALLSTCGSYFSKGAAGRRLDRFLTFMQ 905
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7964.19263.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LEF3_ECTSI1.700e-19100.00Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A835YRH9_9STRA8.720e-965.85Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A7S3VH95_DUNTE6.210e-655.00Hypothetical protein (Fragment) n=1 Tax=Dunaliella... [more]
A0A7J7Q907_9CHLO2.200e-555.00Armadillo-type protein n=1 Tax=Scenedesmus sp. NRE... [more]
A0A383VWZ6_TETOB2.200e-555.00Uncharacterized protein n=2 Tax=Tetradesmus obliqu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016021MIF4G-like domain superfamilyGENE3D1.25.40.180coord: 1..51
e-value: 3.0E-9
score: 38.4
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 2..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7964contigEcto-sp13_S_contig7964:562..720 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7964.19263.1mRNA_Ecto-sp13_S_contig7964.19263.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7964 562..720 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7964.19263.1 ID=prot_Ecto-sp13_S_contig7964.19263.1|Name=mRNA_Ecto-sp13_S_contig7964.19263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
VADPPGDCLRIRLVVAVLEGCGSYFVRGAGLDKLSKFLGVFQRCSSTVVV
HK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016021MIF4-like_sf
IPR016024ARM-type_fold