mRNA_Ecto-sp13_S_contig7961.19260.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7961.19260.1
Unique NamemRNA_Ecto-sp13_S_contig7961.19260.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7961.19260.1 vs. uniprot
Match: D7G7L6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L6_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 9.960e-55
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 1 
Query:    1 MGDAASAWMSSSAQGMPLLKPARRDVFIMDPALAAKHGDAVKLAVRAAPSQDGAPLGEITSKGRAYCLATRGPWLRVLYHGHREAWMLSQTPTEVQ 288
            MGDAASAWMSSSAQGMPLLKPARRDVFIMDPALAAKHGDAVKLAVRAAPSQDGAPLGEITSKGR YCLATRGPWLRVLYHGHREAWMLSQTPTEVQ
Sbjct:  216 MGDAASAWMSSSAQGMPLLKPARRDVFIMDPALAAKHGDAVKLAVRAAPSQDGAPLGEITSKGRVYCLATRGPWLRVLYHGHREAWMLSQTPTEVQ 311
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7961.19260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7L6_ECTSI9.960e-5598.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7961contigEcto-sp13_S_contig7961:5059..6881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size289
Hectar predicted targeting categoryother localisation
Exons3
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464067.7583916-CDS-Ecto-sp13_S_contig7961:5058..51541681464067.7583916-CDS-Ecto-sp13_S_contig7961:5058..5154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7961 5059..5154 +
1681464067.7742076-CDS-Ecto-sp13_S_contig7961:5972..61251681464067.7742076-CDS-Ecto-sp13_S_contig7961:5972..6125Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7961 5973..6125 +
1681464067.7877383-CDS-Ecto-sp13_S_contig7961:6842..68811681464067.7877383-CDS-Ecto-sp13_S_contig7961:6842..6881Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7961 6843..6881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7961.19260.1prot_Ecto-sp13_S_contig7961.19260.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7961 5059..6881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7961.19260.1

>prot_Ecto-sp13_S_contig7961.19260.1 ID=prot_Ecto-sp13_S_contig7961.19260.1|Name=mRNA_Ecto-sp13_S_contig7961.19260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
MGDAASAWMSSSAQGMPLLKPARRDVFIMDPALAAKHGDAVKLAVRAAPS
QDGAPLGEITSKGRAYCLATRGPWLRVLYHGHREAWMLSQTPTEVQ
back to top

mRNA from alignment at Ecto-sp13_S_contig7961:5059..6881+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7961.19260.1 ID=mRNA_Ecto-sp13_S_contig7961.19260.1|Name=mRNA_Ecto-sp13_S_contig7961.19260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1823bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7961:5059..6881+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGACGCGGCGTCGGCTTGGATGTCGTCCTCCGCCCAGGGGATGCC
GCTCCTCAAGCCGGCGCGAAGAGATGTGTTCATCATGGACCCTGCGGTAG
GCGAAGAATCTTGGCTTGTACTCCGCAGGCCTTTTTTTTTTTGCGATTCA
GATTGACTGTTCTTCCGTTCTTTTTTCAGCATAGTTGCCAGAATCGGAAA
CAGCTGTACACGGTATTCGCCCGCGGAGCACAAGCCTGGAAGAGTCAATC
TCGCGATCACCAGAGTTTGAGCGTGGACCCTTCGGTATTTTTAGGTACGA
GTGTGCCCGGCTTCTTCGTGTGGCTTCGTGACTTGTGTGCTAGGGTTAAC
ACGGTTTCAGTCGTCTTTTGTTTTTGGACAATCCTTGCGCTTATCTGAAA
GAGATGGGATGGTTTGGCCGGAGTCTAAGGCTGCGTCACTCGCGTCCCGA
AAGCAAACGCTTTCGACCAACTCGGAGGAGCAAGCAGCGCGGCCTTTCTT
TTGCAGCAACTTGCCGGGGAGGATGGCGGGCAAGCTGGGTGTAACGCTGG
TCTTCGCTGTTTCTCGAATTGACGGCTGTAGGCAGCGATTGGTAGGGCCA
CCCACCCGCAACGCTAAATGCTCTTGTCATATTGTTGTTTGTTGTTGGTT
CCAGTGAACTATTTTTTGTTTTCCGTCGGTTCATACGTAAGTGCTTACGC
TCTAAATCATCGTGTCTCTCGCTTCCGTCGTAATATCTTGTGCGGCGTCC
CGACTTGATCTTAGTATTGTCCTGGCACCAAGCTGGCACATGTATTCGTT
TCAGGGTGTGGCCGGAATGGCCTCCACTCAAGTCGTTTGTTCCCTCGATC
GACACCTGGCTTTGCTTCGATGCTCGTCTTCGTGTTTCTCCGTTCCGTGC
GTTTCAATCGGCAGCTTGCGGCCAAGCACGGAGACGCGGTAAAGCTTGCG
GTGAGGGCGGCTCCCTCCCAGGACGGGGCCCCGCTGGGAGAGATTACCAG
CAAGGGGAGGGCGTACTGCTTGGCGACGCGGGGGCCCTGGTTGAGGGTAC
TATATCACGGACACAGAGTGAGTCCGGCTGGTTGTCTAGGCGTTTTTTTT
TTTGCTGTTGGAGCTACGCCGCGATGCTTGTCTTTTTCTTTCTTTTTAAA
TCCCGTAGACTTTGCATGCTTTCTTGGGGGGTTCCGAAAGAATAGCGCGT
GCTCTGTCACTTCGGCCTTAAAGCCAGTGCCGCTACTGGGTGCGCTTGGG
TTGGTTGATCCCACGAGAACACTCCTACGACGGGGCGCGGCTCCTTTCTT
CTGTGAGCAATACGGACCGGCGTCTGTCCGCGAGTCATCATCCTGGATGC
TACCCCCCGCCCCCCCCCCTCATCCTACCGAGGCATAGCAAACGCAAGGA
AGGATCATGACCAGCTTCTGGCTCACCCTTGTGAAACGTACTGTTGCCTA
GCCTGGGCCGTCGAAAAACCCGGCGTATCGCTCCTCCGTCCCGGCCTTGT
AGGGGCGCGAGGTCAAGCGACTAAGGCATGCGTTTACATCCCTCACCCCC
GCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCGCCC
CCCCCCCGGCGCGGGGCGGGGGGNNNNNNNNNNTTTTTTTTTTGAGCGCT
TCCACCGCCAGTTCACACCCCTTCCCTCCCCCCCCTCCCCCCCACCACAC
GTGAGGGTTTACCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCT
GACGTTGGTCTTGACGCCACCGCGGCATGTGTAGGAGGCGTGGATGCTGT
CGCAGACGCCGACGGAAGTTCAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7961:5059..6881+

>mRNA_Ecto-sp13_S_contig7961.19260.1 ID=mRNA_Ecto-sp13_S_contig7961.19260.1|Name=mRNA_Ecto-sp13_S_contig7961.19260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7961:5059..6881+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGACGCGGCGTCGGCTTGGATGTCGTCCTCCGCCCAGGGGATGCC
GCTCCTCAAGCCGGCGCGAAGAGATGTGTTCATCATGGACCCTGCGCTTG
CGGCCAAGCACGGAGACGCGGTAAAGCTTGCGGTGAGGGCGGCTCCCTCC
CAGGACGGGGCCCCGCTGGGAGAGATTACCAGCAAGGGGAGGGCGTACTG
CTTGGCGACGCGGGGGCCCTGGTTGAGGGTACTATATCACGGACACAGAG
AGGCGTGGATGCTGTCGCAGACGCCGACGGAAGTTCAG
back to top