prot_Ecto-sp13_S_contig7960.19259.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7960.19259.1
Unique Nameprot_Ecto-sp13_S_contig7960.19259.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length525
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7960.19259.1 vs. uniprot
Match: A0A6H5JQC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQC7_9PHAE)

HSP 1 Score: 351 bits (900), Expect = 1.610e-103
Identity = 439/524 (83.78%), Postives = 441/524 (84.16%), Query Frame = 0 
Query:    1 MAIAKGIPLPPATPGSGAGSGGDNESDFGGCTGDRRPKRGARGTXXXXXXXXXXXVGRRGSGGGVVTAAGRGSDGEVDGYRDGHERVAGDEAVPDSRGGGGDGCGGSRSGRSTARRALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRGERDQRGTAAALERGPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDRPPGEDKGFSAQPKSKTALADALDSTILGDLWFERGELKEARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQAGKLPEAEAVCAHAMSIVEVNDSQGHNTPHLMAALLKLQSKILKRQGRRPEAASLRARAVAILEEAAXXXXXXXXXXXXXXXAVGVTSANKPPI 524
            MAIAKGIPLPPATPGSGAGSGGDNESDFGGCTGDRRPKRGARGT  XXXXXXXXX         VVTAAG GSDGEVDGYRDGHERVAGDEAV DSR  GGDGCG SRSGRS ARRALR            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    XXXXXXXXXXXXXXXXXXXXXXXXX +RP GEDKGFSAQ KSKTALADALDSTI GD WFERGELKEARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIR     XXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQAGKL EAEAVCAHAMSIVEV DSQGHNTPHLMAALLKLQSKILKRQGRRPEAASLRARAVAILEEA XXXXXXXXXXXXXXXAVGV SAN+PPI
Sbjct: 1256 MAIAKGIPLPPATPGSGAGSGGDNESDFGGCTGDRRPKRGARGTCGXXXXXXXXXXXXX-----VVTAAGNGSDGEVDGYRDGHERVAGDEAVSDSRDDGGDGCGDSRSGRSAARRALRGTASGGGSLSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGVNLTPSPGTTVADQQTRSXXXXXXXXXXXXXXXXXXXXXXXXXXERPTGEDKGFSAQQKSKTALADALDSTIRGDQWFERGELKEARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIREGNHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQAGKLSEAEAVCAHAMSIVEVKDSQGHNTPHLMAALLKLQSKILKRQGRRPEAASLRARAVAILEEA-XXXXXXXXXXXXXXXAVGVASANEPPI 1761
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7960.19259.1 vs. uniprot
Match: D8LCK1_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK1_ECTSI)

HSP 1 Score: 272 bits (696), Expect = 2.700e-84
Identity = 183/187 (97.86%), Postives = 184/187 (98.40%), Query Frame = 0 
Query:  311 DRPPGEDKGFSAQPKSKTALADALDSTILGDLWFERGELKEARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQAGKLPEAEAVCAHAMSIVEVNDSQGHNTPHLMAALLKLQSKILKRQGRRPEAASLRARAVAILEEAA 497
            +RP GEDK FSAQ KSKTALADALDSTILGDLWFERGELKEARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQAGKLPEAEAVCAHAMSIVEVNDSQGHNTPHLMAALLKLQSKILKRQGRRPEAASLRARAVAILEEAA
Sbjct:  104 ERPTGEDKEFSAQQKSKTALADALDSTILGDLWFERGELKEARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQAGKLPEAEAVCAHAMSIVEVNDSQGHNTPHLMAALLKLQSKILKRQGRRPEAASLRARAVAILEEAA 290
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7960.19259.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQC7_9PHAE1.610e-10383.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCK1_ECTSI2.700e-8497.86Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 321..505
e-value: 2.6E-33
score: 117.3
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 337..482
NoneNo IPR availablePFAMPF13424TPR_12coord: 373..447
e-value: 1.5E-13
score: 50.9
NoneNo IPR availablePANTHERPTHR23202WASP INTERACTING PROTEIN-RELATEDcoord: 9..513

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7960contigEcto-sp13_S_contig7960:1795..6392 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7960.19259.1mRNA_Ecto-sp13_S_contig7960.19259.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7960 1167..6911 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7960.19259.1 ID=prot_Ecto-sp13_S_contig7960.19259.1|Name=mRNA_Ecto-sp13_S_contig7960.19259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=525bp
MAIAKGIPLPPATPGSGAGSGGDNESDFGGCTGDRRPKRGARGTGGGGGG
SGGGGVGRRGSGGGVVTAAGRGSDGEVDGYRDGHERVAGDEAVPDSRGGG
GDGCGGSRSGRSTARRALRRTASGGGSLSPSVAAATTPGRSSRSSSSPGS
DRGGTSGRRSSAVDHHRQQQQQQQRGRGERDQRGTAAALERGPSPSQRQQ
QQQQQQPPPPSPSPSSSSRRNGGMGVASPPPPPPVPAEDSAAARLQQRQN
SGGRSRSRSSEDGGGGGGVNLTPSPGTTVADQQTRSQRRRRERERVGAGG
GGGGGGGGGEDRPPGEDKGFSAQPKSKTALADALDSTILGDLWFERGELK
EARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIREGNHLEAEGLHRR
ALEMRTRALGPNHMDVAATLNNLAVSLKGQAGKLPEAEAVCAHAMSIVEV
NDSQGHNTPHLMAALLKLQSKILKRQGRRPEAASLRARAVAILEEAAAAD
PGGGTTNAPPPPAVGVTSANKPPI*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf