mRNA_Ecto-sp13_S_contig796.19257.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig796.19257.1
Unique NamemRNA_Ecto-sp13_S_contig796.19257.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig796.19257.1 vs. uniprot
Match: D7FU49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU49_ECTSI)

HSP 1 Score: 617 bits (1590), Expect = 1.830e-220
Identity = 341/389 (87.66%), Postives = 355/389 (91.26%), Query Frame = 1 
Query:    1 MALMRMTTLVFMLQGVIAWGVVTSSNDGTSAAEGDLSMPITTTSEFPWVVIIGTLTALTLSALTGRDAVVDILAVMFVMVPFQAFVETFSFVLLVLMHARFYGPAERFLSTATQF-VKTWRHVDKANAARNKARAAYRDTIKAQDKQLFSLQLQCNDFQRSSTATQGDFSHYMWSAERQIDGLTARNAQLETNLALLEADVQTCDRLHDQLQTDLLCTIRDDETSLGEKDAEICSLTKDNDILRQVNGDKDSEIERLKAQLALRLKDPEEVDGAQDIADRSTEPPSPSLHSRWGSVDDASIFRASNSSAASKTPVGRKTPDSSAAVIAATAAGTFIYSKASRRSTDKSVTKIVVTSAVSDADRAAAETLIADAGLEAWGLTMRAASSAG 1164
            MALMR+TTLVFMLQGVIAWGVVTSSNDGTSAAE DLSM ITTTSEFPW VIIGTLTAL LSALTG+DAVVDILAVMFV VPFQAFVET SFVLLVLMHARF GPAERFLSTA QF V TWR+VDK N  R KA  AY DTIKAQD+QL SL LQCNDFQRS+T TQGDFSHYMW AERQIDGLTAR AQLETNLALLEAD QTCDRLHDQLQTDL+CTIRDDET+LG+KDAEICSLTKDNDILRQVNGDKDSEIERLK QLALR+KDPE+VDGAQDIADRSTEPPSPSLHSRWGSVD ASIFRASN+SAA K PVGRKTPDSSAAVIAA AAGTF+YSKASRR+T KS TKIVV S VSDADRAAAE LIADAGLEAWGLTMRA +SAG
Sbjct:    1 MALMRVTTLVFMLQGVIAWGVVTSSNDGTSAAEEDLSMHITTTSEFPWAVIIGTLTALILSALTGQDAVVDILAVMFVTVPFQAFVETVSFVLLVLMHARFCGPAERFLSTAAQFTVNTWRYVDKGNTVRYKA--AYSDTIKAQDEQLSSLTLQCNDFQRSNTVTQGDFSHYMWCAERQIDGLTARKAQLETNLALLEADAQTCDRLHDQLQTDLMCTIRDDETTLGKKDAEICSLTKDNDILRQVNGDKDSEIERLKTQLALRVKDPEKVDGAQDIADRSTEPPSPSLHSRWGSVDGASIFRASNTSAAFKAPVGRKTPDSSAAVIAAAAAGTFVYSKASRRATVKSATKIVVASTVSDADRAAAEALIADAGLEAWGLTMRATTSAG 387
[Close]
BLAST of mRNA_Ecto-sp13_S_contig796.19257.1 vs. uniprot
Match: D7FXP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP9_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 1.870e-86
Identity = 165/221 (74.66%), Postives = 178/221 (80.54%), Query Frame = 1 
Query:  514 MWSAERQIDGLTARNAQLETNLALLEADVQTCDRLHDQLQTDLLCTIRDDETSLGEKDAEICSLTKDNDILRQVNGDKDSEIERLKAQLALRLKDPEEVDGAQDIADRSTEPPSPSLHSRWGS---VDDASIFRASNSSAASKTPVGRKTPDSSAAVIAATAAGTFIYSKASRRSTDKSVTKIVVTSAVSDADRAAAETLIADAGLEAWGLTMR-AASSAG 1164
            MWSAERQIDGLTARNAQLET+LA LEADVQT  R+HD LQTDLLCTIRD ET+LG+KDAEICSLTKD             EIERLKAQL L  K   EVDGAQDIADRSTEPPSPSLHSRWGS   VD ASIFRA N+SA SKTP GRK P++SAA+IAA  AGTF+YSKASRR+TDK  T ++ TSAVSDAD  AAE LIADA LEAWGLTMR AA+SAG
Sbjct:    1 MWSAERQIDGLTARNAQLETHLACLEADVQTYHRVHDLLQTDLLCTIRDGETTLGKKDAEICSLTKDR------------EIERLKAQL-LHSK---EVDGAQDIADRSTEPPSPSLHSRWGSADNVDGASIFRAGNNSADSKTPCGRKAPNASAAIIAA--AGTFVYSKASRRATDKLATNVIATSAVSDADSFAAEALIADARLEAWGLTMRRAATSAG 203
[Close]
BLAST of mRNA_Ecto-sp13_S_contig796.19257.1 vs. uniprot
Match: D7G509_ECTSI (Uncharacterized protein n=5 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G509_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 1.380e-79
Identity = 184/383 (48.04%), Postives = 225/383 (58.75%), Query Frame = 1 
Query:   88 SAAEGDLSMPITTTSEFPWVVIIGTLTALTLSALTGRDAVVDILAVMFVMVPFQAFVETFSFVLLVLMHARFYGPAERFLSTATQFVKTWR------HVDKANAARNKAR--------------------AAYRDTIKAQDKQLFSLQLQCNDFQRSSTATQGDFSHYMWSAERQIDGLTARNAQLETNLALLEADVQTCDRLHDQLQTDLLCTIRDDETSLGEKDAEICSLTKDNDILRQVNGDKDSEIERLKAQLALRLKDPEEVDGAQDIADRSTEPPSPSLHSRWGSVDDASIFRASNSSAASKTPVGRKTPDSSAAVIAATAAGTFIYSKASRRSTDKSVTKIVVTSAVSDADRAAAETLIADAGLEAWGLTMRAASS 1158
            +AAE  LS+   TTSEFPW  II TL AL LSA +GRD V+DI+A+MF  +PF +FV+T  FVL++L+HA FYG AER L TA QF  T R      H  +  A + K R                    A+YR  IK QDKQLF+L LQ +D QRS+ AT  DFSHYMW AER +D LT  NA LE  LA LEADVQT   L+DQ ++D LC++RD ET+L  KDAEI SL +DN  L + N DKD EI+ LKAQLA++LK P+E   A   A R++                 S F+A    + S         DSSAAVIA  A+GTF+ SKASR  T KSV         +D D+AAAE LIAD  L  W L+  A S+
Sbjct:    2 AAAEQSLSITGITTSEFPWASIIWTLIALILSAFSGRDIVIDIMALMFTTMPFDSFVKTLGFVLVILLHAHFYGLAERCLRTAVQFGNTRRVVMSAKHKAQVKALKKKLRVKCRMVELASILDVQSTNLQASYRQRIKLQDKQLFTLHLQFSDLQRSNAATVRDFSHYMWCAERTVDSLTGANALLENKLACLEADVQTGHDLYDQFRSDFLCSLRDGETALSHKDAEISSLKQDNAQLVKANQDKDEEIKLLKAQLAMQLKQPQEACTAGGEAPRTSA--------------GVSSFQAKGHPSVST--------DSSAAVIATAASGTFV-SKASRSGT-KSVATTTYLDTTAD-DKAAAEFLIADTALAHWWLSATATSA 359
[Close]
BLAST of mRNA_Ecto-sp13_S_contig796.19257.1 vs. uniprot
Match: A0A6H5KBI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBI0_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 2.220e-48
Identity = 137/336 (40.77%), Postives = 168/336 (50.00%), Query Frame = 1 
Query:    4 ALMRMTTLVFMLQGVIAWGVVTSS--NDGT----SAAEGDLSMPITTTSEFPWVVIIGTLTALTLSALTGRDAVVDILAVMFVMVPFQAFVETFSFVLLVLMHARFYGPAERFLSTATQFVKTW------RHVDKANAARNKAR--------------------AAYRDTIKAQDKQLFSLQLQCNDFQRSSTATQGDFSHYMWSAERQIDGLTARNAQLETNLALLEADVQTCDRLHDQLQTDLLCTIRDDETSLGE------------------------------------KDAEICSLTKDNDILRQVNGDKDSEIERLKAQLALRLKDPEE 807
            AL+RMT LV +LQ  IAWG++T +   +GT    + +E   S  I+T  EFPW  II TL AL LSA +GRD V+D++A                          FYG +ER L TA Q  KT       +H  +  A + K +                    A YR TIK QDKQLF+L LQ +D QRS  AT  DFSHYMW AER ID L   NA LE  LA LEAD QT   L+DQ ++D LC++RD ET+L                                      KDAEI SL +DN  L +VN DKD EI+ LKAQLA++ K PEE
Sbjct:   16 ALVRMTILVVILQVTIAWGIMTKTVFTEGTPVTMAVSEQSSSTGISTR-EFPWASIIWTLIALILSAFSGRDIVIDVMA-------------------------HFYGLSERCLRTAVQLAKTRQVMMSAKHKAQLKALKKKLQVKCRMVELAFVLDVQSTNLQAPYRQTIKPQDKQLFTLHLQFSDLQRSIAATVRDFSHYMWCAERSIDSLAGANALLENRLACLEADAQTGHDLYDQFRSDFLCSLRDGETTLSHXFRLCGWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDAEISSLKQDNAQLVKVNQDKDEEIKLLKAQLAIQFKQPEE 325
[Close]
BLAST of mRNA_Ecto-sp13_S_contig796.19257.1 vs. uniprot
Match: D7FXQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ0_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.580e-23
Identity = 65/94 (69.15%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:   16 MTTLVFMLQGVIAWGVVTSSNDGTSAAEGDLSMPITTTSEFPWVVIIGTLTALTLSALTGRDAVVDILAVMFVMVPFQAFVETFSFVLLVLMHA 297
            MTTL FMLQG+IAWGVV+ S   TSAA+ DLS  ITT SEFP   I+ TLTAL LSA TGR  VVDI+ +MFV VPF+AFVET  FVLLVLM+A
Sbjct:    1 MTTLGFMLQGIIAWGVVSYSIAETSAADEDLSSGITT-SEFPRSAIMWTLTALVLSARTGRYTVVDIMGLMFVTVPFKAFVETLGFVLLVLMNA 93
[Close]
BLAST of mRNA_Ecto-sp13_S_contig796.19257.1 vs. uniprot
Match: A0A6H5KVY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY5_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 7.270e-11
Identity = 39/57 (68.42%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:  226 MFVMVPFQAFVETFSFVLLVLMHARFYGPAERFLSTATQFVKTWRHVDKANAARNKA 396
            MFV VP +AFVET  FVLLVLM+ARFYG AER LSTA  F KT R+ D A A R+KA
Sbjct:    1 MFVTVPSKAFVETLGFVLLVLMNARFYGLAERCLSTAVAFAKTRRYADNAKAIRHKA 57
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig796.19257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FU49_ECTSI1.830e-22087.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FXP9_ECTSI1.870e-8674.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G509_ECTSI1.380e-7948.04Uncharacterized protein n=5 Tax=Ectocarpus silicul... [more]
A0A6H5KBI0_9PHAE2.220e-4840.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXQ0_ECTSI1.580e-2369.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVY5_9PHAE7.270e-1168.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig796contigEcto-sp13_S_contig796:6184..11402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1167
Hectar predicted targeting categorysignal peptide
Exons10
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_000660.1
Cds size1167
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig796.19257.1prot_Ecto-sp13_S_contig796.19257.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig796 6184..11402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464067.362375-CDS-Ecto-sp13_S_contig796:6183..63141681464067.362375-CDS-Ecto-sp13_S_contig796:6183..6314Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig796 6184..6314 +
1681464067.3782048-CDS-Ecto-sp13_S_contig796:6936..70241681464067.3782048-CDS-Ecto-sp13_S_contig796:6936..7024Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig796 6937..7024 +
1681464067.39596-CDS-Ecto-sp13_S_contig796:7351..74261681464067.39596-CDS-Ecto-sp13_S_contig796:7351..7426Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig796 7352..7426 +
1681464067.4070077-CDS-Ecto-sp13_S_contig796:7800..79051681464067.4070077-CDS-Ecto-sp13_S_contig796:7800..7905Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig796 7801..7905 +
1681464067.4156127-CDS-Ecto-sp13_S_contig796:8564..86031681464067.4156127-CDS-Ecto-sp13_S_contig796:8564..8603Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig796 8565..8603 +
1681464067.4290674-CDS-Ecto-sp13_S_contig796:9052..92111681464067.4290674-CDS-Ecto-sp13_S_contig796:9052..9211Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig796 9053..9211 +
1681464067.4412844-CDS-Ecto-sp13_S_contig796:9434..95481681464067.4412844-CDS-Ecto-sp13_S_contig796:9434..9548Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig796 9435..9548 +
1681464067.4533741-CDS-Ecto-sp13_S_contig796:9816..99131681464067.4533741-CDS-Ecto-sp13_S_contig796:9816..9913Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig796 9817..9913 +
1681464067.4635258-CDS-Ecto-sp13_S_contig796:10555..106071681464067.4635258-CDS-Ecto-sp13_S_contig796:10555..10607Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig796 10556..10607 +
1681464067.4750228-CDS-Ecto-sp13_S_contig796:11095..114021681464067.4750228-CDS-Ecto-sp13_S_contig796:11095..11402Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig796 11096..11402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig796.19257.1

>prot_Ecto-sp13_S_contig796.19257.1 ID=prot_Ecto-sp13_S_contig796.19257.1|Name=mRNA_Ecto-sp13_S_contig796.19257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=389bp
MALMRMTTLVFMLQGVIAWGVVTSSNDGTSAAEGDLSMPITTTSEFPWVV
IIGTLTALTLSALTGRDAVVDILAVMFVMVPFQAFVETFSFVLLVLMHAR
FYGPAERFLSTATQFVKTWRHVDKANAARNKARAAYRDTIKAQDKQLFSL
QLQCNDFQRSSTATQGDFSHYMWSAERQIDGLTARNAQLETNLALLEADV
QTCDRLHDQLQTDLLCTIRDDETSLGEKDAEICSLTKDNDILRQVNGDKD
SEIERLKAQLALRLKDPEEVDGAQDIADRSTEPPSPSLHSRWGSVDDASI
FRASNSSAASKTPVGRKTPDSSAAVIAATAAGTFIYSKASRRSTDKSVTK
IVVTSAVSDADRAAAETLIADAGLEAWGLTMRAASSAG*
back to top

mRNA from alignment at Ecto-sp13_S_contig796:6184..11402+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig796.19257.1 ID=mRNA_Ecto-sp13_S_contig796.19257.1|Name=mRNA_Ecto-sp13_S_contig796.19257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig796:6184..11402+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCTCATGCGCATGACTACGTTAGTCTTCATGCTTCAGGGCGTCAT
CGCGTGGGGTGTCGTAACCTCTTCCAACGACGGCACTTCGGCCGCTGAGG
GAGATTTATCGATGCCCATCACCACCACCAGGTCAGTGAAACGTTCCGCT
TTGCAAGCGCGTACCACGCGCGAACGTTATCGCGGTCGTCGTTGGGGCTC
GTCAAAGTCGACGGATGTCGCAGCCCTTTTTCTTCAGGTTTACAGTACAG
CATCTGTTTTTGGTCTATAAGTACTTCAGACATACCAACAAAAATATTCT
ACACTGTACGGTCAAGGTGTAGCGTTTCATTGATCAATGACTATTTAGAC
ACACAAGCGACTACATCAAGTGGGCCGCCGCGTTTCGAGAGCCCTGTCGG
GTTCACGGCTCGGACCTTGTGCACCGTCGCCAGCTGAAATCCTGTTTACA
TTTTCGGCCCACTTTCGGCTAATTTTGAGCGACCGATGCGATCGTTAGCC
AGCACGCAAAATAGACCGAGAGTAAATACTAACCATACTGCTTGTACTCT
TGAGTGATGATGACATCACTTTATTTAAAATTCGTTGCACAGCAGGAGTA
CCCGTCGCATGCCGTCCGCCTTCGATATGAGCAGTGTGCATGAGACCATT
GCTTCACGTGGTCTCTACAGTAGCATACCATGCCGTACGCAACCGTCGAT
GGTTAACCTGTCTTCCCGCGCCGCTTCTGCTTTATCTCCACATGGATGAA
CAGCGAGTTCCCCTGGGTAGTGATCATCGGGACACTGACAGCGTTGACAT
TATCGGCGTTGACGGGACGGGACGCCGTCGTTGACATTCTGGTGAGGCCA
GGCTTGATGTGACGCCGGAACACAACGATTTTTCCTGTTCCTTTCGTTTT
TTTCCCGTCCTTCGTTGACCAACGAGTCGTGCAGAAGCAAGTGGTGTTTG
CCCAAACCACGCGCCGTGTTCAATTTGTCCTCCTGAGACAGCAAAAAGCG
CCCGAAACGATGGTCTGGTGTCAATTCTCCATTCCATGGGTGTTTGATAT
ACTGTCAACAGTGAAGCGGTAACAAATTCGCACGATTTAGTGTTCTCAAA
AACTAATCCTAGCCTTCCCTTCCGTGTCCATTACACCGCACCGCCACCTC
ACGGCATGTCAACCACAGGCCGTGATGTTCGTAATGGTACCCTTCCAAGC
ATTCGTCGAGACGTTCAGCTTCGTACTCTTGGTCCTGATGCACGTGAGAT
GGATGGGTGTTGATTTGACACGTACAGTATACAGTAGAAGGGAAGAACAC
CTGCACGACGTGTCTGCAGTCCAACAACACTACAAAGGGCGGTGTGTGTG
CCGGTGGTAAATATGCCATGAGAGCGAGCACTTAGTTTCTGGCCTCCACT
GAAAGCTTACCTGAAAAAACGACTGGGTCCCACCAATGTCAGCCCAGCCA
CATTTTTCTCTTTCAGCCTTCGCCGAGTTTCAGGAAATAAAACGAGCAGC
ACTCATATCGTACCGTGCATGAAGGAGAACGAGCGAAATCGCTAACACAA
TCCCTCTCTCTGCTGATTTTGCATAATATTATATAGTCCTTACGTTTACA
ACGCTTTTGTATCGTAGGCCCGCTTCTATGGACCGGCCGAGCGTTTCCTT
TCTACTGCAACACAGTTCGTGAAAACCTGGCGACATGTGGACAAGGCCAA
CGCCGCCCGTAACAAGGCGAGGGTCAGGGGGCTCAAGAGACAGCTTCTGG
TCAAGTCCCGCCTGGCGCGATTGGCGACCATTTTGGACGTTCAGTCCAGG
TAAATGAACATGGACGAACATCGATGCATTAGCGATGACTAGATTATCTG
CTTTGGGTTGCCGGTCCGATGCGATACAAAACCCCTCAGGTGCGTGCGTT
GTTTCGGGTAGGGTGTTATCTGTGAAGAGTAGCCTGACGTCTCGGGGGAC
GAGGATGTTTCGTATGGCAAAGTTTGTGTGTACTAAAGCACAAGTCTCTT
CCACCGACGCTACACTAGGGGCGTTCATGCACAACCGACGTTTCTGCGGA
AGTTGGTGTTTACCCGTATGTCAGGATCGGCCACGCTCCCGTCCGTACCG
GCGAGTTGAAATTTGACCGAAAGCTCATCGCCCTGAGGAACGGTATCAGC
AAGAGCATCATCATTCGAACAGAGTTGCGCTCAACACTGCTGTGATTTGA
AGTAGAATCAGCTACCAACTCTTGTCCCAACCTGCCTCGCATGATTCAAT
TCGCAATATTTGCCTCGCATGATTCAATTCGCAATATTTGCCTCGCATGA
TTTAATCCGCAACATATTGCTGCTGCGCTGCTGCTGCTGCTGCTGCTGCG
CCTCCTTTGTATGCGTTTCAGCAACCTTCAGGCGGCCTACCGCGACACGA
TCAAGGCACAAGACAAGCAGGTGAAGACACCCCCCCGAAGTGCTTCCATG
CTGTCGCGCTACAATCTCATCCTGCTCATCTTGTCGTTTGAGTCGCTGGG
CAATCGTCAAATCTTCATTTCACTTGGAACTCACGCCTTGACTGGGTGCC
CGCCGTCAAACAAAGCACTTTGATTGTATCCCCCTACCGTGATACCTCCT
CCTTCTGCGCCATGATGATGAGCCGACTACTACGTAGAACGCCCGCACGC
GGTAGGACAAGGAGGTCATTTTTCTTTATCCTCAGAGCTACGGTTTTTCA
GCGCGATGTAATCTGAAAGCGCCATCCTCCCCTCCCTCCCTTCCTCCCTC
CCTTCCTCCCTCCCTTCCTCCCTCCCTTCCTGGCCCTCGCTCTCTCCAAC
CCGTCCTCTCCTTTGGTCTTCTCACATGTCGTGTCTTTCATCACTTCCGC
GAACGTCCCGGTCTCCCAGCTTTTCAGTCTTCAGCTCCAATGCAACGATT
TCCAGCGTTCCAGCACGGCGACACAGGGGGATTTCTCGCACTACATGTGG
TCCGCCGAGCGACAGATCGACGGGCTGACGGCGAGGAATGCCCAACTCGA
GACAAACCTTGCTTTATTGGAGGCGGACGTGAGTCAAAAGGGGGGGGGTG
ACCGAGTACTTTTTTTACGCCTAGAGTTCTAGACAGTTGTCATATGAGGG
GTGCCCCTACGAAGGCTACCGTTTGCGATGCTATCCTTCCTGATTCGAAA
TGCAACAAGCAAGAAGTTTCAGTCCCCACGTGCACTGAATCTACCTCCAC
TAACACGACGTTGTATCCGCTGCTCCGCTGTCTCGACGCACGCGACCTCA
GGTCCAGACGTGCGACCGACTGCACGACCAGCTGCAAACCGATCTCCTGT
GCACGATCCGGGACGACGAGACGAGTCTGGGCGAGAAGGATGCGGAGATA
TGCTCTCTGACCAAGGTGAATAACGCAGGAGGTTGCGACGGGGATGCCAA
CAAAAGGGAACTTCCCGCTGATGATTTTGCGTGCGCACGAAAACTACTAG
CAGGTTTGCCCCGTTGACATTGTTACTATGCTAGCATACCACCGCGGTTT
TCACGTTTAGGTCGACGGGGTAGAATACATTCGACGGGCTAGCTGCCTGT
CTGTGCGTGATAGCGTGGAATGACATAAGACCACCACCTCCGTTTTCCCT
TGTATTGCGCTCTGTGCTATACTACGATGACAGGACAACGACATCCTCCG
CCAGGTGAACGGCGACAAAGATAGCGAGATCGAGCGATTAAAGGCCCAGC
TCGCCCTGCGGTTGAAGGACCCCGAGGAAGGTTAGCGTTTGCGTCAACGT
GTTGCCGAGGTGTTGTGTGCTGCAACAGTTCGAGGGGACTCATTGTGGAG
AGGTCATCTCTCTCAGCCGTGGGTACTCCTTGAGCGGTTGCTTTGAGGAA
GATTTCCGACCAACGATCGATGTACGGACGTGAAGTAGTTGGACACCACA
ACCCGAGCCGAAACGATGACTTGCGACGTACGGAGTATTTTTTGGGGGGG
CGGGTGTGCTTGTTGACTATGTAGGTGACTATGTAGGTGGCCAATGTCTT
CGTCAACGGGCATGGTCATGTGGAAGTTGTCGCAGCTCGTCCTCTACCAG
CTTGTGCGTCCTTCCTGCTCGAACGTTGACAAGAGTTTCAGAAGCCTGTG
TCGAAAACTGGACGATGCTGTGCATGGTTTTTCTACCGTCCAGGTTTCCC
GGCAATTTTACGTAGCGAATGTGTACGTTGTAACGACTGGTATTTGGACG
AATGTGTCCCATGCCCTCTCCCAATAAAATGCTATTCGTGGAAAGCAGGT
AAACCATAGACTCGGTCGCGAGTGGCGTAAAGAGCGCGAGACTCCTCTGT
GTCTCACAACGCGCAGTAGTACCAACAACAACGTTCCCTTAATTGCTCCC
TGTTTTCTATTTGTTTTCGCAGTTGACGGCGCGCAGGACATCGCCGACCG
CTCGACCGAGCCGCCCAGCCCCAGGTACGATACCAAATTTGCATGAAGGT
CGCTCGGTAGACTTGCCGCCAAACGGTTCCGGTCGCCTTGAACCCCCGTT
GTCGGTATGAAGACGGTGGATGTTTGTTTGACGGTTGCGGCGACGTTGCT
TTCGGGATGCGTGCTCTTTGATGTACCAGATGTCACTGATGGCAGCATGC
ACGGGTGCGCTCTGCGATGCTTCGTTGACGGGATTTTTCGCTTGCTACGA
TACTTCGCAACGCCAATCGCAGTAGGATACGTGCTACCTTTGAGCAATCT
AGTGGGGAAGACCGGGGCGAGGTACCGTATCATCTTCTTCAAGTATTTCG
GCTATTCCATCCCATGACATGTTCCGAAGAAACGAGCAGCAAGAGACCGT
CGGCCTACTTTACTTGTTTTTCTACAGGATCCATGCCCATCCCCGCCTCC
TCCCTCACAATTTGCGGTGCCCCCCCCCGCGCCCGCCGACTCTTGTCCTG
TCAAACAAACAGCTTGCACAGCCGGTGGGGAAGCGTGGATGACGCCTCGA
TTTTCCGCGCTAGCAACAGCTCCGCCGCATCCAAGACCCCCGTTGGCAGG
AAAACGCCCGACTCCTCGGCTGCCGTCATCGCCGCTACCGCTGCCGGGAC
CTTCATCTACTCCAAGGCCTCCCGCCGTTCGACCGACAAGTCGGTCACCA
AGATCGTCGTCACCAGCGCCGTTTCCGACGCTGACAGGGCTGCAGCGGAG
ACATTGATCGCCGACGCCGGGCTTGAAGCTTGGGGGCTCACCATGAGAGC
TGCGTCCTCCGCGGGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig796:6184..11402+

>mRNA_Ecto-sp13_S_contig796.19257.1 ID=mRNA_Ecto-sp13_S_contig796.19257.1|Name=mRNA_Ecto-sp13_S_contig796.19257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1167bp|location=Sequence derived from alignment at Ecto-sp13_S_contig796:6184..11402+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCTCATGCGCATGACTACGTTAGTCTTCATGCTTCAGGGCGTCAT
CGCGTGGGGTGTCGTAACCTCTTCCAACGACGGCACTTCGGCCGCTGAGG
GAGATTTATCGATGCCCATCACCACCACCAGCGAGTTCCCCTGGGTAGTG
ATCATCGGGACACTGACAGCGTTGACATTATCGGCGTTGACGGGACGGGA
CGCCGTCGTTGACATTCTGGCCGTGATGTTCGTAATGGTACCCTTCCAAG
CATTCGTCGAGACGTTCAGCTTCGTACTCTTGGTCCTGATGCACGCCCGC
TTCTATGGACCGGCCGAGCGTTTCCTTTCTACTGCAACACAGTTCGTGAA
AACCTGGCGACATGTGGACAAGGCCAACGCCGCCCGTAACAAGGCGAGGG
CGGCCTACCGCGACACGATCAAGGCACAAGACAAGCAGCTTTTCAGTCTT
CAGCTCCAATGCAACGATTTCCAGCGTTCCAGCACGGCGACACAGGGGGA
TTTCTCGCACTACATGTGGTCCGCCGAGCGACAGATCGACGGGCTGACGG
CGAGGAATGCCCAACTCGAGACAAACCTTGCTTTATTGGAGGCGGACGTC
CAGACGTGCGACCGACTGCACGACCAGCTGCAAACCGATCTCCTGTGCAC
GATCCGGGACGACGAGACGAGTCTGGGCGAGAAGGATGCGGAGATATGCT
CTCTGACCAAGGACAACGACATCCTCCGCCAGGTGAACGGCGACAAAGAT
AGCGAGATCGAGCGATTAAAGGCCCAGCTCGCCCTGCGGTTGAAGGACCC
CGAGGAAGTTGACGGCGCGCAGGACATCGCCGACCGCTCGACCGAGCCGC
CCAGCCCCAGCTTGCACAGCCGGTGGGGAAGCGTGGATGACGCCTCGATT
TTCCGCGCTAGCAACAGCTCCGCCGCATCCAAGACCCCCGTTGGCAGGAA
AACGCCCGACTCCTCGGCTGCCGTCATCGCCGCTACCGCTGCCGGGACCT
TCATCTACTCCAAGGCCTCCCGCCGTTCGACCGACAAGTCGGTCACCAAG
ATCGTCGTCACCAGCGCCGTTTCCGACGCTGACAGGGCTGCAGCGGAGAC
ATTGATCGCCGACGCCGGGCTTGAAGCTTGGGGGCTCACCATGAGAGCTG
CGTCCTCCGCGGGGTGA
back to top