mRNA_Ecto-sp13_S_contig7958.19253.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Match: D7FHW5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW5_ECTSI) HSP 1 Score: 161 bits (407), Expect = 4.380e-48 Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 3
Query: 153 MDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVNVRD------LTTSACMGCGAVKRTF 404
MDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVNVR LTTS CMGCGAV+RT+
Sbjct: 1 MDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVNVRVVRPPTYLTTSVCMGCGAVERTY 90
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Match: A0A6H5L5Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Z1_9PHAE) HSP 1 Score: 138 bits (347), Expect = 1.320e-39 Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 3
Query: 153 MDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN 347
MDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN
Sbjct: 1 MDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN 65
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Match: A0A835ZG13_9STRA (Tctex-1 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG13_9STRA) HSP 1 Score: 137 bits (344), Expect = 9.500e-39 Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = 3
Query: 60 RPTYRHKASVNTMREIIKGVLESELQGCTYHMDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN 347
+P YR +ASVN MREII+ +LE +L G TY D AT QTK+I DEIK+ LK M+L RYKYVVQV+IGEQRGEGVRMG RCFWD++TD ASE+++N
Sbjct: 1 QPAYRKRASVNQMREIIRAILEEQLSGQTYSGDVATAQTKKISDEIKDRLKTMSLDRYKYVVQVIIGEQRGEGVRMGCRCFWDADTDACASESFIN 96
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Match: A0A7S2BCB7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BCB7_9STRA) HSP 1 Score: 126 bits (317), Expect = 3.980e-34 Identity = 60/105 (57.14%), Postives = 76/105 (72.38%), Query Frame = 3
Query: 33 AGQQLTYQSRPTYRHKASVNTMREIIKGVLESELQGCTYHMDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN 347
A + TYQ RP YR + SVN M+ +IK V++ EL+G TY + QT I D+I+N L+++ PRYK+ VQVVIGEQRGEGVRMG R FWD++TD ASETYVN
Sbjct: 33 ASKTPTYQIRPEYRQRISVNEMKVVIKSVVKEELEGKTYQTESVQDQTTAIADKIRNRLRDLQKPRYKFFVQVVIGEQRGEGVRMGCRTFWDADTDAYASETYVN 137
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Match: A0A507FCI1_9FUNG (Uncharacterized protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507FCI1_9FUNG) HSP 1 Score: 125 bits (314), Expect = 6.270e-34 Identity = 58/114 (50.88%), Postives = 75/114 (65.79%), Query Frame = 3
Query: 33 AGQQLTYQSRPTYRHKASVNTMREIIKGVLESELQGCTYHMDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVNVRDLTTSAC 374
A Y RP ++ K + ++I +L L G TYH D + T+ I DEIKN LKE++LPRYKY+V VVIGE RGEGVRMG RCFWD++TDNVA +T++NV +L C
Sbjct: 6 AEDSAVYSIRPNFKQKFRPAIVTKLIHQILADRLTGATYHPDTCSQWTREIADEIKNRLKELDLPRYKYLVNVVIGEMRGEGVRMGCRCFWDADTDNVAQDTFINVSELLVFIC 119
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Match: A0A7S3MAW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAW9_9STRA) HSP 1 Score: 124 bits (312), Expect = 1.020e-33 Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 3
Query: 48 TYQSRPTYRHKASVNTMREIIKGVLESELQGCTYHMDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN 347
TY P Y++K V REIIK VL+S+L+ Y+M+ TK++ D+IK+ LK++ LPRYK VVQV IGEQRG+GVRMGSRCFWDS+TD+ ASETY N
Sbjct: 13 TYVIHPEYKNKFRVGPTREIIKEVLQSKLEKAQYNMETTQALTKQVADDIKDRLKDLVLPRYKIVVQVAIGEQRGQGVRMGSRCFWDSDTDSYASETYSN 112
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Match: A0A7S2S8M8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8M8_9STRA) HSP 1 Score: 124 bits (310), Expect = 1.930e-33 Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 3
Query: 48 TYQSRPTYRHKASVNTMREIIKGVLESELQGCTYHMDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN 347
TYQ RP Y+ + SV M+ II V++ EL+G TY +DQA VQTK I DEI+N LK ++LPRYK++VQVV+GE R EGVRMG R FWD+ETD A+ Y+N
Sbjct: 9 TYQIRPAYKQRVSVAAMKTIIDTVMKEELEGKTYAVDQAQVQTKHISDEIRNRLKALDLPRYKFMVQVVLGEMRLEGVRMGCRTFWDAETDAHATSNYMN 108
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Match: A0A812LYX8_9DINO (DYNLT2B protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812LYX8_9DINO) HSP 1 Score: 122 bits (307), Expect = 5.840e-33 Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 3
Query: 36 GQQLTYQSRPTYRHKASVNTMREIIKGVLESELQGCTYHMDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN 347
G + TY P Y++K REII+ VL+S+L TY M+ + TK++ D+IK+ LKE+NLPRYK VVQV IGEQ+G+GVRMG+RCFWD +TD+ ASE Y N
Sbjct: 7 GDENTYVIHPEYKNKFRPGPTREIIRDVLQSKLDKATYSMETTQLLTKQVADDIKDRLKELNLPRYKIVVQVSIGEQKGQGVRMGTRCFWDGDTDSYASEMYCN 110
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Match: A0A813IMB4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IMB4_POLGL) HSP 1 Score: 122 bits (305), Expect = 2.510e-32 Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 3
Query: 48 TYQSRPTYRHKASVNTMREIIKGVLESELQGCTYHMDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN 347
TY P Y++K RE+IK V++++L+ TY D ++ TK++ DEIK+ LKE+ LPRYK VVQV IGEQ+G+GVRMGSRCFWD +TD+ ASETY N
Sbjct: 37 TYVIHPEYKNKFRPGPTREVIKDVMQAKLERATYSPDTTSLLTKQVADEIKDRLKELMLPRYKIVVQVAIGEQKGQGVRMGSRCFWDGDTDSYASETYSN 136
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Match: A0A6U6Z4C7_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A6U6Z4C7_9DINO) HSP 1 Score: 120 bits (301), Expect = 4.860e-32 Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 3
Query: 48 TYQSRPTYRHKASVNTMREIIKGVLESELQGCTYHMDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN 347
+Y P Y++K +EIIK VL+S+L+ Y M++ TK++ D+IK+ LKE+N RYK VVQV IGEQRG+GVRMGSRCFWDS+TDN ASETY N
Sbjct: 12 SYIIHPEYKNKFRPGPAKEIIKEVLQSKLEKAQYSMEETQALTKQVADDIKDRLKELNWHRYKIVVQVAIGEQRGQGVRMGSRCFWDSDTDNFASETYSN 111 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7958.19253.1 >prot_Ecto-sp13_S_contig7958.19253.1 ID=prot_Ecto-sp13_S_contig7958.19253.1|Name=mRNA_Ecto-sp13_S_contig7958.19253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=164bp MNGVGADAGQQLTYQSRPTYRHKASVNTMREIIKGVLESELQGCTYHMDQback to top mRNA from alignment at Ecto-sp13_S_contig7958:3630..4998- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7958.19253.1 ID=mRNA_Ecto-sp13_S_contig7958.19253.1|Name=mRNA_Ecto-sp13_S_contig7958.19253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7958:3630..4998- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7958:3630..4998- >mRNA_Ecto-sp13_S_contig7958.19253.1 ID=mRNA_Ecto-sp13_S_contig7958.19253.1|Name=mRNA_Ecto-sp13_S_contig7958.19253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7958:3630..4998- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |