mRNA_Ecto-sp13_S_contig7957.19252.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7957.19252.1
Unique NamemRNA_Ecto-sp13_S_contig7957.19252.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7957.19252.1 vs. uniprot
Match: D7G8Q6_ECTSI (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q6_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 2.800e-72
Identity = 115/123 (93.50%), Postives = 118/123 (95.93%), Query Frame = 1 
Query:  166 MKHGVNLAAPFVGMKKEESIEYPFAKQFCIRRHDRGTRVMVVQEMAEEPSYAALPEGKLTHVLEGEDPLEAMGAAARAGLVTRIKASIEASGHAYRLGDFIVRVGKCKKGAVFRGLALEVRIR 534
            MKHGVNLAAPFVGMKKEE IEYPFAKQFCIRR+DRGTRVMVVQEMAEEPSYAA+PEGKLTHVLEGEDPLEAMGAAARAGLVTRIKASIE  GHAYRLGDF+VRVGKCKKGAVFRGLALEV  R
Sbjct:    1 MKHGVNLAAPFVGMKKEEGIEYPFAKQFCIRRNDRGTRVMVVQEMAEEPSYAAVPEGKLTHVLEGEDPLEAMGAAARAGLVTRIKASIE--GHAYRLGDFVVRVGKCKKGAVFRGLALEVEYR 121
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BLAST of mRNA_Ecto-sp13_S_contig7957.19252.1 vs. uniprot
Match: A0A835Z8G4_9STRA (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.790e-16
Identity = 53/121 (43.80%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:  166 MKHGVNLAAPFVGM-KKEESIEYPFAKQFCIRRHDRGTRVMVVQEMAEEPSYAALPEGKLTHVLEGEDPLEAMGAAARAGLVTRIKASIEASGHAYRLGDFIVRVGKCKKGAVFRGLALEV 525
            M+ GVN A  F+G   +++   YPF +   +RR D   RV +VQEM +  +        L  VL G+D LEA   A +    TR+KA IE  G A+ LGDF VRVG C+KG+ +RGLA+EV
Sbjct:    1 MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPGRVCLVQEMGKRAAT-------LEQVLVGDDALEA-DMAKKVPYPTRLKAVIE--GSAFSLGDFTVRVGTCRKGSTYRGLAMEV 111
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7957.19252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8Q6_ECTSI2.800e-7293.50Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z8G4_9STRA4.790e-1643.80Mediator of RNA polymerase II transcription subuni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7957contigEcto-sp13_S_contig7957:21..1222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size534
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionMediator complex, subunit Med20
Ec32 orthologEc-22_002630.3
Cds size534
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464066.8711317-CDS-Ecto-sp13_S_contig7957:20..1161681464066.8711317-CDS-Ecto-sp13_S_contig7957:20..116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7957 21..116 -
1681464066.8836193-CDS-Ecto-sp13_S_contig7957:325..4471681464066.8836193-CDS-Ecto-sp13_S_contig7957:325..447Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7957 326..447 -
1681464066.894676-CDS-Ecto-sp13_S_contig7957:606..6761681464066.894676-CDS-Ecto-sp13_S_contig7957:606..676Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7957 607..676 -
1681464066.9051144-CDS-Ecto-sp13_S_contig7957:854..9831681464066.9051144-CDS-Ecto-sp13_S_contig7957:854..983Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7957 855..983 -
1681464066.9192846-CDS-Ecto-sp13_S_contig7957:1105..12221681464066.9192846-CDS-Ecto-sp13_S_contig7957:1105..1222Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7957 1106..1222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7957.19252.1prot_Ecto-sp13_S_contig7957.19252.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7957 21..1222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7957.19252.1

>prot_Ecto-sp13_S_contig7957.19252.1 ID=prot_Ecto-sp13_S_contig7957.19252.1|Name=mRNA_Ecto-sp13_S_contig7957.19252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp
CSLYGKSIPQEESVQTEKELEHQIVQALGAEYLSRWVVEVTYKLKKRMKK
GSTNEMKHGVNLAAPFVGMKKEESIEYPFAKQFCIRRHDRGTRVMVVQEM
AEEPSYAALPEGKLTHVLEGEDPLEAMGAAARAGLVTRIKASIEASGHAY
RLGDFIVRVGKCKKGAVFRGLALEVRIR
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mRNA from alignment at Ecto-sp13_S_contig7957:21..1222-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7957.19252.1 ID=mRNA_Ecto-sp13_S_contig7957.19252.1|Name=mRNA_Ecto-sp13_S_contig7957.19252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1202bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7957:21..1222- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCAGTCTTTATGGAAAATCCATACCCCAGGAGGAAAGCGTTCAGACGGA
GAAAGAGCTTGAGCATCAAATCGTTCAAGCCCTCGGGGCAGAATACCTGT
CCCGCTGGGTTGTCGAGGTACGGGCTCTTCCAGGCAGCGTCAGTCGAGCT
GCTTTGTAGCGCAAAGTTGCGGCACCTGATATTGGCAAACAAACGAATTT
CACGTCTTCCACCAATCCCTTGGAATTCATATCACACAGGTGACGTACAA
GCTAAAAAAGAGGATGAAAAAGGGAAGCACGAATGAGATGAAGCACGGCG
TAAACCTAGCCGCTCCTTTTGTGGGGATGAAGAAGGAGGAGAGCATCGAG
TACCCGTTCGCCAAGCAGGTGCGCTCGGGCAGGCTCGAACCTGTTTTGCC
GTTTGCACCAAAGCACGCCTCTGCAGCGAGCTACGTGCTCGCATATGTCG
CTTCGTTTAGGGTACGGTACCATCAGCTATTTTTTTACTGAGCATGTGTC
TGTCCGCTGCTTGTTCTTCTCAAACCGATGGCAACCACCGAGACAGTTCT
GTATTAGGAGGCACGACCGTGGCACTCGAGTGATGGTGGTGCAGGAGATG
GCTGAAGAACCCTCGTGTGAGTTATCCATCGTTTCGCAGTCGGAGTCCGC
TTGGACTGCGGGTTTTCCCAATGCTCTTCGATTTTGTGTACAAGGGTAGA
AGTTAGCTTGAGCTTTGTAACGCGCCAGCATGGTCCAGACATACACCGCT
GAAACCTAGTGTACTGGAATTGCAGACGCAGCTTTGCCCGAAGGAAAGCT
GACTCACGTCTTGGAGGGAGAAGATCCTCTTGAGGCGATGGGTGCTGCCG
CAAGAGCAGGGTTGGTGACGAGGATCAAGGCTTCAATAGAGGCAAGTGTG
TGTGTGGTCGCCCGATTTGTATGAGACATCAGCCGGGGTCACACGGGAGC
CTAGTGACTTTGGTTTTATTGCCTCATTTTCCTACTTTGGTGCGCACCAC
AAAAAAAGACAAGAGACGCTTGCGCGACTAGCAAGATTTAGCAGGGTTTG
AGGAGTATTCCCATATATTCGATGCCCTGAGTATTGTTCGCGCTTACATC
GTCCAGGGTCATGCCTATCGATTAGGCGATTTCATAGTGCGTGTCGGCAA
GTGCAAGAAAGGCGCCGTCTTCAGGGGTCTGGCGTTGGAGGTGAGAATTA
GA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7957:21..1222-

>mRNA_Ecto-sp13_S_contig7957.19252.1 ID=mRNA_Ecto-sp13_S_contig7957.19252.1|Name=mRNA_Ecto-sp13_S_contig7957.19252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7957:21..1222- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCAGTCTTTATGGAAAATCCATACCCCAGGAGGAAAGCGTTCAGACGGA
GAAAGAGCTTGAGCATCAAATCGTTCAAGCCCTCGGGGCAGAATACCTGT
CCCGCTGGGTTGTCGAGGTGACGTACAAGCTAAAAAAGAGGATGAAAAAG
GGAAGCACGAATGAGATGAAGCACGGCGTAAACCTAGCCGCTCCTTTTGT
GGGGATGAAGAAGGAGGAGAGCATCGAGTACCCGTTCGCCAAGCAGTTCT
GTATTAGGAGGCACGACCGTGGCACTCGAGTGATGGTGGTGCAGGAGATG
GCTGAAGAACCCTCGTACGCAGCTTTGCCCGAAGGAAAGCTGACTCACGT
CTTGGAGGGAGAAGATCCTCTTGAGGCGATGGGTGCTGCCGCAAGAGCAG
GGTTGGTGACGAGGATCAAGGCTTCAATAGAGGCAAGTGGTCATGCCTAT
CGATTAGGCGATTTCATAGTGCGTGTCGGCAAGTGCAAGAAAGGCGCCGT
CTTCAGGGGTCTGGCGTTGGAGGTGAGAATTAGA
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