prot_Ecto-sp13_S_contig7955.19251.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7955.19251.1
Unique Nameprot_Ecto-sp13_S_contig7955.19251.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length36
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7955.19251.1 vs. uniprot
Match: D8LEF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF6_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 7.300e-17
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 
Query:    1 VYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 35
            VYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK
Sbjct:   48 VYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 82
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BLAST of mRNA_Ecto-sp13_S_contig7955.19251.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.840e-14
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 0 
Query:    1 VYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 35
            VYS DFHPTEPKLVSSSADKTVLIWEPNRKRNSRK
Sbjct:  567 VYSTDFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 601
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BLAST of mRNA_Ecto-sp13_S_contig7955.19251.1 vs. uniprot
Match: A0A835Z281_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z281_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.810e-6
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 0 
Query:    1 VYSADFHPTEPKLVSSSADKTVLIWEPNR--KRNSRK 35
            VY+  FHPTEP+LVS SAD+TV IW P++  +RN RK
Sbjct:   88 VYAVHFHPTEPRLVSGSADQTVRIWGPSKGGRRNGRK 124
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7955.19251.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LEF6_ECTSI7.300e-17100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNQ7_9PHAE2.840e-1497.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z281_9STRA1.810e-662.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..35
e-value: 2.0E-6
score: 28.7
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..35
score: 10.786
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..35
score: 11.31
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 1..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7955contigEcto-sp13_S_contig7955:7050..7157 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7955.19251.1mRNA_Ecto-sp13_S_contig7955.19251.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7955 7050..7157 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7955.19251.1 ID=prot_Ecto-sp13_S_contig7955.19251.1|Name=mRNA_Ecto-sp13_S_contig7955.19251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=36bp
VYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
IPR036322WD40_repeat_dom_sf