mRNA_Ecto-sp13_S_contig123.1925.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig123.1925.1
Unique NamemRNA_Ecto-sp13_S_contig123.1925.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig123.1925.1 vs. uniprot
Match: D7G904_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G904_ECTSI)

HSP 1 Score: 499 bits (1285), Expect = 1.890e-177
Identity = 261/267 (97.75%), Postives = 265/267 (99.25%), Query Frame = 1 
Query:  100 MLSSPSAGGMRLAGNYAHRGSPGVVRRTASRPISIIRSTSVPAQLQDRTQAGDPDPEGGSGGNPANRRGLHTRDRSLQHDFNNGAAGGVNGIVQSLPPPQAPLLAGSLPPSRFLDDLPPLSLGPQADNSFDSDCGALSTSLKANRLYATSCPANIGAHFGRPPGSRLQSMSVLAEGPLDEEEEEAAEEGAEASKRITALSILESLSQTPAAPVDGSRVDAESVESLTNVADERLPIEDDVFELDGLEGVNEELEAVSLSEAGSSNMA 900
            MLSSPSAGGMRLAGNYAHRGSPGVVRRTASRPISIIRSTSVPAQLQDRTQAGDPDPEGGSGGNPANRRGLHTRDRSLQHDFN+GAAGGVNGIVQSLPPPQAPLLAGSLPPSRFLDDLPPLSLGPQADNSFDSDCGALSTSLKANRLYATSCPANIGAHFGRPPGSRLQSMSVLAEG LDEEEEEAAEEGAEASKRITALSILESLSQTPAAPVDGSRVDAESVESLTN+ DERLPIEDDVFELDGLEGVNEELEA+SLSEAGSSNM+
Sbjct:    1 MLSSPSAGGMRLAGNYAHRGSPGVVRRTASRPISIIRSTSVPAQLQDRTQAGDPDPEGGSGGNPANRRGLHTRDRSLQHDFNSGAAGGVNGIVQSLPPPQAPLLAGSLPPSRFLDDLPPLSLGPQADNSFDSDCGALSTSLKANRLYATSCPANIGAHFGRPPGSRLQSMSVLAEGSLDEEEEEAAEEGAEASKRITALSILESLSQTPAAPVDGSRVDAESVESLTNIVDERLPIEDDVFELDGLEGVNEELEALSLSEAGSSNMS 267
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig123.1925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G904_ECTSI1.890e-17797.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig123contigEcto-sp13_S_contig123:8064..10638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size903
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_002420.1
Cds size903
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462654.1631165-CDS-Ecto-sp13_S_contig123:8063..81231681462654.1631165-CDS-Ecto-sp13_S_contig123:8063..8123Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig123 8064..8123 -
1681462654.1748452-CDS-Ecto-sp13_S_contig123:8373..86791681462654.1748452-CDS-Ecto-sp13_S_contig123:8373..8679Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig123 8374..8679 -
1681462654.182748-CDS-Ecto-sp13_S_contig123:9171..92341681462654.182748-CDS-Ecto-sp13_S_contig123:9171..9234Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig123 9172..9234 -
1681462654.191734-CDS-Ecto-sp13_S_contig123:9667..99751681462654.191734-CDS-Ecto-sp13_S_contig123:9667..9975Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig123 9668..9975 -
1681462654.2017343-CDS-Ecto-sp13_S_contig123:10472..106381681462654.2017343-CDS-Ecto-sp13_S_contig123:10472..10638Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig123 10473..10638 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig123.1925.1prot_Ecto-sp13_S_contig123.1925.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig123 8064..10638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig123.1925.1

>prot_Ecto-sp13_S_contig123.1925.1 ID=prot_Ecto-sp13_S_contig123.1925.1|Name=mRNA_Ecto-sp13_S_contig123.1925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=301bp
MAYISAGAAGRDKDSKQSAEGAAGGDKESQLSAMLSSPSAGGMRLAGNYA
HRGSPGVVRRTASRPISIIRSTSVPAQLQDRTQAGDPDPEGGSGGNPANR
RGLHTRDRSLQHDFNNGAAGGVNGIVQSLPPPQAPLLAGSLPPSRFLDDL
PPLSLGPQADNSFDSDCGALSTSLKANRLYATSCPANIGAHFGRPPGSRL
QSMSVLAEGPLDEEEEEAAEEGAEASKRITALSILESLSQTPAAPVDGSR
VDAESVESLTNVADERLPIEDDVFELDGLEGVNEELEAVSLSEAGSSNMA
*
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mRNA from alignment at Ecto-sp13_S_contig123:8064..10638-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig123.1925.1 ID=mRNA_Ecto-sp13_S_contig123.1925.1|Name=mRNA_Ecto-sp13_S_contig123.1925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2575bp|location=Sequence derived from alignment at Ecto-sp13_S_contig123:8064..10638- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCATATATCTCCGCAGGGGCAGCCGGCCGCGACAAAGACTCCAAACA
ATCAGCCGAAGGGGCAGCCGGCGGTGACAAAGAATCCCAACTTTCAGCTA
TGCTGTCTAGCCCCTCTGCCGGGGGCATGCGATTGGCAGGAAACTATGCC
CACCGTGGCTCTCCCGGTGAGGGATGTCTACTAAATTTGGTTGGTTGGAG
AGCTTTCTTTTTGTTTGTTCATCCTTTCTGGTGCCTGCAGGTGTTGGCAA
GCGTAAGCCTTCATCTTTCATGTGTTGGCAAGATCCTGAACACTGCATCT
GCGCTTGAGGTACCGCACCTGTCTTTGAGCAGACACGTGTATTTTTGCGC
ACAGCCATGCGTCGACACTCCGTCGCCAAGTATGCTGGATCATTGAGTTG
TGCTACCGTCATTTCTTTGCCCTGTGAAAGCTATGCAATCCATCGATTGT
GCGCGTGTTTGTGCTTGCAAGCGTGAGTTCTGAAGGGGATCATCACGGCT
GACAGCATGTGAGCGGCGCCCACAGAAGAACGGGGAAGAATATTTTTCGC
GACCGTAGGTTGCTGGGTTTCCTAGAATCCCCGCAAGGATTTGGGTCAAC
GTTATGCGAACATTGAGCTTGTGAACGCTTGTGCTGTCTGGACGTCGTTT
GTCTATTTTCCAGGTGTAGTTCGGCGGACAGCTAGTAGACCCATCTCTAT
CATTCGCTCTACATCAGTTCCAGCTCAGCTCCAAGATAGAACGCAGGCCG
GTGACCCGGATCCGGAAGGGGGTAGCGGAGGCAACCCTGCAAATAGGAGA
GGCCTTCACACTCGCGACAGGAGTCTTCAGCACGATTTCAATAACGGTGC
GGCAGGAGGAGTTAATGGGATCGTCCAGTCCCTCCCTCCACCGCAGGCTC
CCCTGCTGGCGGGGTCCCTCCCTCCGTCGCGTTTTTTGGATGACTTGCCA
CCACTCAGTCTCGGGCCGCAGGTGTGTTTACAGGACAACGTGACGCAATT
TATTTTTGCCAGGAACGCAGCGTAGCAACAGTGTCCTGGCGCAAAGGATT
GCCGGGAGAACGTAGTTTGGTTCTTTTTGAATCCTTCGTACGACTTGCTA
CGAGACCCGCGATTGGCACAATGGTCTGCCTAGCTGCCTAGCTTGTCTTC
GCAAGAAGATTAAGAAGAAATTCTGGTTTTGCGAGAATGATTTGCTTTCC
CCCACTTTCGTCATTCCACATGACGTACTCATAGGGGAACAAAGTGCCAG
CAACCAGCTCTCCTTTGTTGGGCCTGCCAGGCCTAACCTCTGTTAAGCTA
GATGCATGCGTTGTCCGTAGTCTGGCCCATGGACATCGCTTAGTACGCAA
CGGCCCGCTGTTCGCATCACCCATCCCGGGGACCTTGCCCCTGTTCTGGC
GCAGGCTGACAATTCGTTTGACTCCGATTGTGGTGCGCTCTCGACGTCGT
TGAAGGCAAACCGCCTGGTAAGTTGTGTCTTGTCTACCCTCCCGAATCAA
ACGGTTACGTTCCATGCACAAGATGCACAGCAATCGTCAGCAATTTCGGG
ACACCCTCTCTGTTGGAAGCTCCCTTCTTTACCCTGGAAGTACATGTTTT
CGCGAGCAGGATGGGTGCAAATAGTCTGGCACATCCCGAGAGGGCCACGT
GATCATAGATATTGCGCTTGTTTGTATCAGACACCCCGCCACCGAGACGT
TCGGCAACAGATTGGTAGCTCCTCTGTTTGGTGTTTGTGGCCGCCCCGAA
GTAGCACGTTGTCACTCGTGCCAGCAAGTACGCTGTCAGCCTGCCGGCTC
CAAGATGCCCCAGTGCATTCTTCCTTCGGTTGGCGCTGCCCAAGACCATC
GGCTACATGCGTTTCAACATTTTTTCTTAATTGATTTTTCCTCAACACCG
CCCACATCTCTCGCGTTTTCGATCGTGTCGGTGTTGGTTATCGTCATGAC
AAAACGCAGTACGCCACGTCTTGTCCGGCAAACATCGGGGCGCATTTTGG
CCGCCCGCCAGGATCGAGACTCCAGTCCATGTCCGTTCTCGCAGAGGGGC
CGTTAGATGAGGAGGAGGAAGAGGCGGCGGAGGAAGGGGCAGAGGCGTCG
AAGAGGATCACGGCCCTGTCGATTCTAGAGTCTTTGTCGCAAACGCCCGC
CGCACCCGTGGACGGGTCGAGAGTGGACGCAGAATCTGTAGAATCGTTGA
CGAATGTCGCAGATGAGCGACTGCCTATCGAAGACGACGTGTTCGAGCTG
GACGGACTCGAAGGGGTGAGAACGAAACTGGCAGCAGTGTTGAGTGCAGC
AGTTAGCTCTGACTTTAAAAGAGAGTACATACGCATATTGTTCAAAACTC
ACCCCCCTCCCTGTTCGCAACATCATGATGTGCCAAACGCCAGCTACGCA
CGGCACGCCAGTGAAAAGCATGCATTCCTTTCGTTGATGACGCATACTCT
TCCTCAGCAGTATGCTGTTTGTATTGTTGTATCAACCTCAAACAACGCTC
CTTGTTTGTCCGCAGGTGAACGAGGAGCTGGAGGCTGTTTCTCTCTCCGA
AGCAGGCAGCAGCAACATGGCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig123:8064..10638-

>mRNA_Ecto-sp13_S_contig123.1925.1 ID=mRNA_Ecto-sp13_S_contig123.1925.1|Name=mRNA_Ecto-sp13_S_contig123.1925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig123:8064..10638- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCATATATCTCCGCAGGGGCAGCCGGCCGCGACAAAGACTCCAAACA
ATCAGCCGAAGGGGCAGCCGGCGGTGACAAAGAATCCCAACTTTCAGCTA
TGCTGTCTAGCCCCTCTGCCGGGGGCATGCGATTGGCAGGAAACTATGCC
CACCGTGGCTCTCCCGGTGTAGTTCGGCGGACAGCTAGTAGACCCATCTC
TATCATTCGCTCTACATCAGTTCCAGCTCAGCTCCAAGATAGAACGCAGG
CCGGTGACCCGGATCCGGAAGGGGGTAGCGGAGGCAACCCTGCAAATAGG
AGAGGCCTTCACACTCGCGACAGGAGTCTTCAGCACGATTTCAATAACGG
TGCGGCAGGAGGAGTTAATGGGATCGTCCAGTCCCTCCCTCCACCGCAGG
CTCCCCTGCTGGCGGGGTCCCTCCCTCCGTCGCGTTTTTTGGATGACTTG
CCACCACTCAGTCTCGGGCCGCAGGCTGACAATTCGTTTGACTCCGATTG
TGGTGCGCTCTCGACGTCGTTGAAGGCAAACCGCCTGTACGCCACGTCTT
GTCCGGCAAACATCGGGGCGCATTTTGGCCGCCCGCCAGGATCGAGACTC
CAGTCCATGTCCGTTCTCGCAGAGGGGCCGTTAGATGAGGAGGAGGAAGA
GGCGGCGGAGGAAGGGGCAGAGGCGTCGAAGAGGATCACGGCCCTGTCGA
TTCTAGAGTCTTTGTCGCAAACGCCCGCCGCACCCGTGGACGGGTCGAGA
GTGGACGCAGAATCTGTAGAATCGTTGACGAATGTCGCAGATGAGCGACT
GCCTATCGAAGACGACGTGTTCGAGCTGGACGGACTCGAAGGGGTGAACG
AGGAGCTGGAGGCTGTTTCTCTCTCCGAAGCAGGCAGCAGCAACATGGCG
TAG
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