mRNA_Ecto-sp13_S_contig7955.19250.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7955.19250.1
Unique NamemRNA_Ecto-sp13_S_contig7955.19250.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7955.19250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7955contigEcto-sp13_S_contig7955:6087..6935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size849
Hectar predicted targeting categoryother localisation
Exons1
Cds size435
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464066.6709-UTR-Ecto-sp13_S_contig7955:6086..62151681464066.6709-UTR-Ecto-sp13_S_contig7955:6086..6215Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7955 6087..6215 +
1681464066.6972969-UTR-Ecto-sp13_S_contig7955:6650..69351681464066.6972969-UTR-Ecto-sp13_S_contig7955:6650..6935Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7955 6651..6935 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464066.6878817-CDS-Ecto-sp13_S_contig7955:6215..66501681464066.6878817-CDS-Ecto-sp13_S_contig7955:6215..6650Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7955 6216..6650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7955.19250.1prot_Ecto-sp13_S_contig7955.19250.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7955 6216..6650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7955.19250.1

>prot_Ecto-sp13_S_contig7955.19250.1 ID=prot_Ecto-sp13_S_contig7955.19250.1|Name=mRNA_Ecto-sp13_S_contig7955.19250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
MSHGTLLTRTTQVSSTRVPTNEIVPQETIVDLLSASLPLPVDTPCVGLRK
QYPPKVTGLTTTACDYDYTPPSVSTAHQMEDAVQQTDPNTTATDLNAACR
SSLCVFVQPSAAIQLWMGSLSRTPPNFSGGGGRIPSVLESPPAV*
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mRNA from alignment at Ecto-sp13_S_contig7955:6087..6935+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7955.19250.1 ID=mRNA_Ecto-sp13_S_contig7955.19250.1|Name=mRNA_Ecto-sp13_S_contig7955.19250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=849bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7955:6087..6935+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGATGTGTAGTTCTCCCCCGTAGCATATTGTTTCCTTTATCCAGGCGAAA
ACAGCAGCTTCCTTTCTGTTTCTCGCCATCGTTTGCCGCCTTCGCTTGGC
CGACAAAAAACACGGAAAAAAACGTCTGCATGTCCCACGGAACATTACTC
ACCCGGACTACGCAAGTATCATCCACTCGTGTTCCGACAAACGAAATCGT
ACCTCAAGAGACAATTGTGGACCTCCTCTCTGCCTCGCTCCCATTGCCCG
TGGACACGCCTTGCGTTGGTCTTCGTAAACAATACCCCCCCAAGGTCACT
GGTCTAACGACTACAGCATGCGACTATGACTACACCCCCCCCTCCGTTTC
CACAGCCCACCAGATGGAGGACGCCGTTCAACAAACGGATCCCAACACTA
CCGCGACGGACCTCAATGCCGCCTGCAGGTCCAGCTTATGCGTGTTCGTC
CAACCGTCTGCGGCGATACAACTTTGGATGGGTTCCCTGAGTAGAACGCC
ACCTAACTTCTCCGGCGGGGGGGGCAGGATACCGTCCGTTCTAGAGAGCC
CCCCTGCAGTTTGACAACAACATTTTTTCGTGTTCGGGTAAACCAATGAG
CAAGATTCGGGGGGGGGGATGTACGGGGAGGAAGACGACACACGTGCCTT
CCGTACATCCAATTCGTCGGTGGGGCTTTTTCAGTCGTGAGTCTGCCGGT
CATCAGTCTTCGAGAAGAAGACAAAAAAAGAGACAAAAGGAGAAGCGGAC
ACGCACGCGCGGGCGCGCATGTTATCAATCACTAAGTACATCAATTCTGG
TGATCCTCTGATTCTCAAGCCCCATAGGCGATTGAGTTTCTGTGCCCAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7955:6087..6935+

>mRNA_Ecto-sp13_S_contig7955.19250.1 ID=mRNA_Ecto-sp13_S_contig7955.19250.1|Name=mRNA_Ecto-sp13_S_contig7955.19250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7955:6087..6935+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCCACGGAACATTACTCACCCGGACTACGCAAGTATCATCCACTCG
TGTTCCGACAAACGAAATCGTACCTCAAGAGACAATTGTGGACCTCCTCT
CTGCCTCGCTCCCATTGCCCGTGGACACGCCTTGCGTTGGTCTTCGTAAA
CAATACCCCCCCAAGGTCACTGGTCTAACGACTACAGCATGCGACTATGA
CTACACCCCCCCCTCCGTTTCCACAGCCCACCAGATGGAGGACGCCGTTC
AACAAACGGATCCCAACACTACCGCGACGGACCTCAATGCCGCCTGCAGG
TCCAGCTTATGCGTGTTCGTCCAACCGTCTGCGGCGATACAACTTTGGAT
GGGTTCCCTGAGTAGAACGCCACCTAACTTCTCCGGCGGGGGGGGCAGGA
TACCGTCCGTTCTAGAGAGCCCCCCTGCAGTTTGA
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