mRNA_Ecto-sp13_S_contig79530.19248.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig79530.19248.1
Unique NamemRNA_Ecto-sp13_S_contig79530.19248.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig79530.19248.1 vs. uniprot
Match: D7FRC8_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC8_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 1.520e-41
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 1 
Query:    1 LHDRCVVLLIRDSRGAYYPSIYLDDHGEEDAQLRRGRPLFLNKHRYDSLKQLYLRHKVAQEVSAIRASSDRVIRENY 231
            ++D CVVLLIRDSRGAYYPSIYLDDHGEEDAQLR GRPLFLNKHRYDSL+QLYLRHKVAQEV AIRASSDRVIRENY
Sbjct:  177 IYDGCVVLLIRDSRGAYYPSIYLDDHGEEDAQLRHGRPLFLNKHRYDSLRQLYLRHKVAQEVLAIRASSDRVIRENY 253
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BLAST of mRNA_Ecto-sp13_S_contig79530.19248.1 vs. uniprot
Match: D7G3D4_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D4_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 2.390e-40
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:   13 CVVLLIRDSRGAYYPSIYLDDHGEEDAQLRRGRPLFLNKHRYDSLKQLYLRHKVAQEVSAIRASSDRVIRENYY 234
            CVVLLIRDSRGAYYPSIYLDDHGEEDAQLRRGRPLFLNKHRYDSLKQLYLRHKVAQEVSAIRASSDRVIRENYY
Sbjct: 1781 CVVLLIRDSRGAYYPSIYLDDHGEEDAQLRRGRPLFLNKHRYDSLKQLYLRHKVAQEVSAIRASSDRVIRENYY 1854
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BLAST of mRNA_Ecto-sp13_S_contig79530.19248.1 vs. uniprot
Match: A0A836CB31_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB31_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.100e-24
Identity = 50/78 (64.10%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:    1 LHDRCVVLLIRDSRGAYYPSIYLDDHGEEDAQLRRGRPLFLNKHRYDSLKQLYLRHKVAQEVSAIRASSDRVIRENYY 234
            L  RC VLL R  R AY+ S+YLD+HGEED  LRRGRPL+L++ RY +L+  Y +H++AQEV+AIRASSDRVIREN+Y
Sbjct: 2444 LVQRCQVLLARGGRAAYWASLYLDEHGEEDVGLRRGRPLYLSEQRYGALRLAYAQHRIAQEVTAIRASSDRVIRENFY 2521
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BLAST of mRNA_Ecto-sp13_S_contig79530.19248.1 vs. uniprot
Match: A0A7S1Z2B5_TRICV (E3 ubiquitin-protein ligase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2B5_TRICV)

HSP 1 Score: 93.2 bits (230), Expect = 1.680e-22
Identity = 42/78 (53.85%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:    1 LHDRCVVLLIRDSRGAYYPSIYLDDHGEEDAQLRRGRPLFLNKHRYDSLKQLYLRHKVAQEVSAIRASSDRVIRENYY 234
            L  +C VLL+ +++ AY  S+Y+D+HGEED  LRRGRPLFL   RY++L+ L+ RH + +EV+ IR++SDRVIR+N+Y
Sbjct:   69 LVQKCTVLLVHNNKSAYSASLYVDEHGEEDPGLRRGRPLFLKDERYEALEALWRRHGIPREVAQIRSTSDRVIRDNWY 146
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BLAST of mRNA_Ecto-sp13_S_contig79530.19248.1 vs. uniprot
Match: A0A7S4RXC5_9STRA (E3 ubiquitin-protein ligase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RXC5_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.500e-21
Identity = 43/78 (55.13%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:    1 LHDRCVVLLIRDSRGAYYPSIYLDDHGEEDAQLRRGRPLFLNKHRYDSLKQLYLRHKVAQEVSAIRASSDRVIRENYY 234
            L  +C VLL+ +++ AY PS+Y+D+HGEED  LRRGRPLFLN  R+ SL+ L+ +H + +EV+ IR++SDRVIR+N+Y
Sbjct:  628 LVQKCAVLLMHNNKSAYSPSLYVDEHGEEDPGLRRGRPLFLNNDRFQSLEMLWRQHGIPREVAQIRSTSDRVIRDNWY 705
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BLAST of mRNA_Ecto-sp13_S_contig79530.19248.1 vs. uniprot
Match: B7G3L3_PHATC (E3 ubiquitin-protein ligase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3L3_PHATC)

HSP 1 Score: 94.7 bits (234), Expect = 6.490e-21
Identity = 43/78 (55.13%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:    1 LHDRCVVLLIRDSRGAYYPSIYLDDHGEEDAQLRRGRPLFLNKHRYDSLKQLYLRHKVAQEVSAIRASSDRVIRENYY 234
            L  +C VLL+ +++ AY PS+Y+D+HGEED  LRRGRPLFLN+ RY +L+QL+ ++ + +EV+ IR++SDRVIR+N+Y
Sbjct:  593 LVQKCTVLLMHNNKSAYSPSLYVDEHGEEDPGLRRGRPLFLNQARYHALEQLWRQNGIPREVAQIRSTSDRVIRDNWY 670
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BLAST of mRNA_Ecto-sp13_S_contig79530.19248.1 vs. uniprot
Match: A0A7S2LK20_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LK20_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 6.640e-21
Identity = 44/78 (56.41%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:    1 LHDRCVVLLIRDSRGAYYPSIYLDDHGEEDAQLRRGRPLFLNKHRYDSLKQLYLRHKVAQEVSAIRASSDRVIRENYY 234
            L  +CVVLLI +++ AY  S+Y+D+HGEED  LRRGRPL+L+K RY+ L++L+ +H V +EV+ IR++SDRVIR+N+Y
Sbjct: 1337 LLHKCVVLLIHNNKSAYSLSLYVDEHGEEDVGLRRGRPLYLHKDRYECLQKLWSQHDVPREVAQIRSTSDRVIRDNWY 1414
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BLAST of mRNA_Ecto-sp13_S_contig79530.19248.1 vs. uniprot
Match: A0A7S0C9S2_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9S2_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 6.930e-21
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:    1 LHDRCVVLLIRDSRGAYYPSIYLDDHGEEDAQLRRGRPLFLNKHRYDSLKQLYLRHKVAQEVSAIRASSDRVIRENYY 234
            L  +C VLL+ +++ AY  S+Y+D+HGEED  LRRGRPLFL K RY+SLK L+ +H + +EV+ IR++SDRVIR+N+Y
Sbjct:  395 LVQKCTVLLMHNNKSAYSASLYVDEHGEEDPGLRRGRPLFLKKTRYESLKFLWRQHGIPREVAQIRSTSDRVIRDNWY 472
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BLAST of mRNA_Ecto-sp13_S_contig79530.19248.1 vs. uniprot
Match: A0A7S2MIJ1_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MIJ1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 9.040e-21
Identity = 42/78 (53.85%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:    1 LHDRCVVLLIRDSRGAYYPSIYLDDHGEEDAQLRRGRPLFLNKHRYDSLKQLYLRHKVAQEVSAIRASSDRVIRENYY 234
            L  +C VLL+ +++ AY PS+Y+D+HGEED  LRRGRPLFL   R+ SL+ L+ +H + +EV+ IR++SDRVIR+N+Y
Sbjct:  326 LVQKCTVLLMHNNKSAYSPSLYVDEHGEEDPGLRRGRPLFLKNERFQSLEMLWRQHGIPREVAQIRSTSDRVIRDNWY 403
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BLAST of mRNA_Ecto-sp13_S_contig79530.19248.1 vs. uniprot
Match: A0A7S0F4Q9_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F4Q9_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.220e-20
Identity = 42/78 (53.85%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:    1 LHDRCVVLLIRDSRGAYYPSIYLDDHGEEDAQLRRGRPLFLNKHRYDSLKQLYLRHKVAQEVSAIRASSDRVIRENYY 234
            L  +C VLL+ +++ AY PS+Y+D+HGEED  LRRGRPLFLN  RY +L+ L+ +  + +EV+ IR++SDRVIR+N+Y
Sbjct:  279 LVQKCTVLLMHNNKSAYSPSLYVDEHGEEDPSLRRGRPLFLNAERYRALEVLWRQQGIPREVAQIRSTSDRVIRDNWY 356
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig79530.19248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRC8_ECTSI1.520e-4192.21E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sil... [more]
D7G3D4_ECTSI2.390e-40100.00E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sil... [more]
A0A836CB31_9STRA1.100e-2464.10E3 ubiquitin-protein ligase n=1 Tax=Tribonema minu... [more]
A0A7S1Z2B5_TRICV1.680e-2253.85E3 ubiquitin-protein ligase n=1 Tax=Trieres chinen... [more]
A0A7S4RXC5_9STRA3.500e-2155.13E3 ubiquitin-protein ligase n=2 Tax=Ditylum bright... [more]
B7G3L3_PHATC6.490e-2155.13E3 ubiquitin-protein ligase n=2 Tax=Phaeodactylum ... [more]
A0A7S2LK20_9STRA6.640e-2156.41E3 ubiquitin-protein ligase n=1 Tax=Leptocylindrus... [more]
A0A7S0C9S2_9STRA6.930e-2156.41E3 ubiquitin-protein ligase n=1 Tax=Proboscia iner... [more]
A0A7S2MIJ1_9STRA9.040e-2153.85E3 ubiquitin-protein ligase n=1 Tax=Helicotheca ta... [more]
A0A7S0F4Q9_9STRA2.220e-2053.85E3 ubiquitin-protein ligase n=1 Tax=Craspedostauro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig79530contigEcto-sp13_S_contig79530:11..606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score152.9
Seed ortholog evalue6.2e-35
Seed eggNOG ortholog2880.D7G3D4
Model size237
KEGG koko:K10625,ko:K10626,ko:K11978
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000280,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010029,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010528,GO:0010529,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0016043,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016597,GO:0016740,GO:0019216,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0032006,GO:0032007,GO:0032446,GO:0032501,GO:0032504,GO:0032991,GO:0033522,GO:0033993,GO:0034641,GO:0035825,GO:0036094,GO:0036211,GO:0040029,GO:0042221,GO:0043161,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043200,GO:0043201,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048232,GO:0048285,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050832,GO:0050896,GO:0050994,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061630,GO:0061659,GO:0061982,GO:0065007,GO:0070647,GO:0070728,GO:0070887,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071417,GO:0071495,GO:0071596,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097305,GO:0098542,GO:0140013,GO:0140096,GO:1900140,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
Exons2
EggNOG free text desc.E3 ubiquitin-protein ligase
EggNOG OGsKOG1139@1,KOG1139@2759
EC2.3.2.27
Cds size237
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464066.615413-CDS-Ecto-sp13_S_contig79530:10..1041681464066.615413-CDS-Ecto-sp13_S_contig79530:10..104Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig79530 11..104 +
1681464066.6330688-CDS-Ecto-sp13_S_contig79530:463..6061681464066.6330688-CDS-Ecto-sp13_S_contig79530:463..606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig79530 464..606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig79530.19248.1prot_Ecto-sp13_S_contig79530.19248.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig79530 11..606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig79530.19248.1

>prot_Ecto-sp13_S_contig79530.19248.1 ID=prot_Ecto-sp13_S_contig79530.19248.1|Name=mRNA_Ecto-sp13_S_contig79530.19248.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
LHDRCVVLLIRDSRGAYYPSIYLDDHGEEDAQLRRGRPLFLNKHRYDSLK
QLYLRHKVAQEVSAIRASSDRVIRENYY*
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mRNA from alignment at Ecto-sp13_S_contig79530:11..606+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig79530.19248.1 ID=mRNA_Ecto-sp13_S_contig79530.19248.1|Name=mRNA_Ecto-sp13_S_contig79530.19248.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=596bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79530:11..606+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCATGATAGGTGTGTGGTGTTGCTCATCCGAGACAGCAGGGGCGCCTA
CTACCCGTCCATCTACCTCGACGACCACGGAGAAGAGGACGCACGTAAGT
CAGTCACGTAAGGCCCAGTCCTGGAGGGCATTTCAAAAAAGTGTTTGTCG
TTTGACTCGCCCTCCCGCTGGTCGAGAAGGGCCACGATCTTGTTGCTGTC
CGTTCGTTGATATCGTTCGTGTTTCTCACGCAGTAGGTGTGTGCGTGTGC
TTGGTTGTACGCGGCAATTTAGGATGCTAGTCAAGAAATTCCCTCCCCGT
AACGGCAAAAATTTCAAGTGCTTTCCCCTCTCGGCAACGAAAACGCCGCC
GATTGTTTTAAACTTGCGCTGATCGTCTTGTCGTCACCATTGCCTGTGTG
TGATAGCAATTCGTCGTTGACTTGCGCCTATTTCTTGTTTTTGGTTGTCA
CAGAGCTTCGACGCGGCCGCCCGTTGTTCCTGAACAAGCACCGGTATGAT
TCCCTGAAGCAGCTGTACCTCCGACACAAGGTAGCCCAGGAGGTTTCGGC
CATCCGCGCCAGCTCGGATCGGGTCATCAGGGAGAACTACTACTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig79530:11..606+

>mRNA_Ecto-sp13_S_contig79530.19248.1 ID=mRNA_Ecto-sp13_S_contig79530.19248.1|Name=mRNA_Ecto-sp13_S_contig79530.19248.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79530:11..606+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCATGATAGGTGTGTGGTGTTGCTCATCCGAGACAGCAGGGGCGCCTA
CTACCCGTCCATCTACCTCGACGACCACGGAGAAGAGGACGCACAGCTTC
GACGCGGCCGCCCGTTGTTCCTGAACAAGCACCGGTATGATTCCCTGAAG
CAGCTGTACCTCCGACACAAGGTAGCCCAGGAGGTTTCGGCCATCCGCGC
CAGCTCGGATCGGGTCATCAGGGAGAACTACTACTAA
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