mRNA_Ecto-sp13_S_contig7953.19247.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7953.19247.1
Unique NamemRNA_Ecto-sp13_S_contig7953.19247.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7953.19247.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.220e-13
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    7 LQGKYSEAEPLYERSLAIRQKALGFDHPDVAQSLNNYAELLRA 135
            +QGKY EAEPLYERS AI++K LG +HPDVA SLNN  ELLRA
Sbjct:   17 IQGKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRA 59
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BLAST of mRNA_Ecto-sp13_S_contig7953.19247.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.340e-11
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 LVLQGKYSEAEPLYERSLAIRQKALGFDHPDVAQSLNNYAELLRA 135
            L+ QGKY +A PLY+RSLAI +K  G DHPDVAQSLNN AELLRA
Sbjct:  413 LIFQGKYDQAGPLYDRSLAILEKVHGPDHPDVAQSLNNRAELLRA 457
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BLAST of mRNA_Ecto-sp13_S_contig7953.19247.1 vs. uniprot
Match: A0A6H5K8Z8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z8_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.790e-11
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 LVLQGKYSEAEPLYERSLAIRQKALGFDHPDVAQSLNNYAELLRA 135
            L  QGKY +AE LYERSLAIR+K LG +HPDVAQSLNN  ELLRA
Sbjct:   13 LKAQGKYDDAEQLYERSLAIREKVLGPEHPDVAQSLNN-RELLRA 56
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BLAST of mRNA_Ecto-sp13_S_contig7953.19247.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.330e-11
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 LVLQGKYSEAEPLYERSLAIRQKALGFDHPDVAQSLNNYAELLRA 135
            L  QGKY EA  LYERSLAIR+KALG DHPDVAQSLNN+A LL +
Sbjct:  828 LKAQGKYDEAGKLYERSLAIREKALGPDHPDVAQSLNNWAVLLES 872
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BLAST of mRNA_Ecto-sp13_S_contig7953.19247.1 vs. uniprot
Match: A0A2W4QJT5_9GAMM (Uncharacterized protein n=1 Tax=Candidatus Methylumidiphilus alinenensis TaxID=2202197 RepID=A0A2W4QJT5_9GAMM)

HSP 1 Score: 62.0 bits (149), Expect = 9.380e-11
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   10 QGKYSEAEPLYERSLAIRQKALGFDHPDVAQSLNNYAEL 126
            QGKY+EAEPLY+ SLAI +KALG DHPDVA SLNN A L
Sbjct:    8 QGKYAEAEPLYQSSLAIAEKALGKDHPDVAVSLNNLAGL 46
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BLAST of mRNA_Ecto-sp13_S_contig7953.19247.1 vs. uniprot
Match: A0A3B8JJF2_9CYAN (Tetratricopeptide repeat-containing protein (Fragment) n=1 Tax=Cyanobacteria bacterium UBA8553 TaxID=2055771 RepID=A0A3B8JJF2_9CYAN)

HSP 1 Score: 60.8 bits (146), Expect = 1.010e-10
Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    7 LQGKYSEAEPLYERSLAIRQKALGFDHPDVAQSLNNYAEL 126
            +QG YS+AEPLY+RSLAI +KALG +HP+VA SLNN A+L
Sbjct:    8 VQGNYSQAEPLYQRSLAIWEKALGSEHPNVATSLNNLADL 47
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BLAST of mRNA_Ecto-sp13_S_contig7953.19247.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.570e-10
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 LVLQGKYSEAEPLYERSLAIRQKALGFDHPDVAQSLNNYAEL 126
            +  QGKY EA PLYERSLAIR+K LG DHPDVAQSLNN A L
Sbjct:  795 ITFQGKYEEAGPLYERSLAIREKVLGPDHPDVAQSLNNRALL 836
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BLAST of mRNA_Ecto-sp13_S_contig7953.19247.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 5.500e-10
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    7 LQGKYSEAEPLYERSLAIRQKALGFDHPDVAQSLNNYAELL 129
            +QGKY+EAEPLYERSLAI++K LG +HPDVA SL+N A LL
Sbjct:  692 IQGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLL 732
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BLAST of mRNA_Ecto-sp13_S_contig7953.19247.1 vs. uniprot
Match: A0A838VSY7_9NOST (CHAT domain-containing protein n=1 Tax=Nostocaceae cyanobacterium TaxID=2723028 RepID=A0A838VSY7_9NOST)

HSP 1 Score: 62.4 bits (150), Expect = 1.870e-9
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   19 YSEAEPLYERSLAIRQKALGFDHPDVAQSLNNYAELLR 132
            Y +AEPLY+RSLAIR+K LG +HPDVAQSLNN AEL R
Sbjct:    2 YQQAEPLYQRSLAIREKVLGKEHPDVAQSLNNLAELYR 39
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BLAST of mRNA_Ecto-sp13_S_contig7953.19247.1 vs. uniprot
Match: G3IYX2_METTV (Tetratricopeptide TPR_1 repeat-containing protein n=1 Tax=Methylobacter tundripaludum (strain ATCC BAA-1195 / DSM 17260 / SV96) TaxID=697282 RepID=G3IYX2_METTV)

HSP 1 Score: 62.0 bits (149), Expect = 2.560e-9
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   13 GKYSEAEPLYERSLAIRQKALGFDHPDVAQSLNNYAELLR 132
            GKYSEAEPL +RSLAIR+KALG +HPDVA SLNN A L +
Sbjct:  303 GKYSEAEPLLQRSLAIREKALGEEHPDVATSLNNLAVLYK 342
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7953.19247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3K8_9PHAE1.220e-1374.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIY6_9PHAE2.340e-1173.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8Z8_9PHAE2.790e-1175.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4D0_9PHAE3.330e-1175.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2W4QJT5_9GAMM9.380e-1176.92Uncharacterized protein n=1 Tax=Candidatus Methylu... [more]
A0A3B8JJF2_9CYAN1.010e-1070.00Tetratricopeptide repeat-containing protein (Fragm... [more]
A0A6H5JJK0_9PHAE1.570e-1076.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G722_ECTSI5.500e-1073.17NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A838VSY7_9NOST1.870e-976.32CHAT domain-containing protein n=1 Tax=Nostocaceae... [more]
G3IYX2_METTV2.560e-975.00Tetratricopeptide TPR_1 repeat-containing protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7953contigEcto-sp13_S_contig7953:3603..4153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score63.9
Seed ortholog evalue4e-08
Seed eggNOG ortholog2880.D7G722
Model size252
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
Cds size252
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464066.5730312-CDS-Ecto-sp13_S_contig7953:3602..37161681464066.5730312-CDS-Ecto-sp13_S_contig7953:3602..3716Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7953 3603..3716 -
1681464066.584898-CDS-Ecto-sp13_S_contig7953:4015..41531681464066.584898-CDS-Ecto-sp13_S_contig7953:4015..4153Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7953 4016..4153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7953.19247.1prot_Ecto-sp13_S_contig7953.19247.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7953 3603..4153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7953.19247.1

>prot_Ecto-sp13_S_contig7953.19247.1 ID=prot_Ecto-sp13_S_contig7953.19247.1|Name=mRNA_Ecto-sp13_S_contig7953.19247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
LVLQGKYSEAEPLYERSLAIRQKALGFDHPDVAQSLNNYAELLRAQGKYD
EAEPLYERSLAIREKALGPEHPDVAQSLNNRARL
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mRNA from alignment at Ecto-sp13_S_contig7953:3603..4153-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7953.19247.1 ID=mRNA_Ecto-sp13_S_contig7953.19247.1|Name=mRNA_Ecto-sp13_S_contig7953.19247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=551bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7953:3603..4153- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGTGCTTCAGGGGAAGTATTCGGAGGCGGAGCCCCTGTATGAACGATC
CCTTGCCATCCGCCAGAAGGCTCTAGGTTTTGATCACCCTGATGTGGCCC
AGTCGCTCAACAATTACGCGGAGTTGTTGAGAGCGCAGGTGAGAGCAACC
GTCAGATTGTACCAGGAAATGTCGTAGAGTCCATATTGGTCGAGTGAGGA
TTGCGTTCTTGGTGTACTACTCCCTCGCCGTAACCCACTGCTTGCCATAC
AGGGCAAATACGATGAGGCGGAGCCACTTTTTGGGCGATCACAAGCCATA
CTAGAGAAGGTGCTGGGTCCCGAGAATCCTGATGTGGCCCAGTCGCTCAA
CAACCGGGCGGTGTTGTTGAGCATTTGTTCCTCCGCATTCGATGTCTTCA
CCCCTTAACACATTTTCGTCATTTCGTGATGTTTCAGGGCAAGTACGACG
AGGCAGAACCGTTGTATGAACGTTCCCTTGCCATCCGCGAGAAAGCACTA
GGCCCGGAGCATCCGGATGTAGCCCAGTCGCTCAACAACCGGGCGCGGTT
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7953:3603..4153-

>mRNA_Ecto-sp13_S_contig7953.19247.1 ID=mRNA_Ecto-sp13_S_contig7953.19247.1|Name=mRNA_Ecto-sp13_S_contig7953.19247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7953:3603..4153- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGTGCTTCAGGGGAAGTATTCGGAGGCGGAGCCCCTGTATGAACGATC
CCTTGCCATCCGCCAGAAGGCTCTAGGTTTTGATCACCCTGATGTGGCCC
AGTCGCTCAACAATTACGCGGAGTTGTTGAGAGCGCAGGGCAAGTACGAC
GAGGCAGAACCGTTGTATGAACGTTCCCTTGCCATCCGCGAGAAAGCACT
AGGCCCGGAGCATCCGGATGTAGCCCAGTCGCTCAACAACCGGGCGCGGT
TG
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