mRNA_Ecto-sp13_S_contig7953.19246.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7953.19246.1
Unique NamemRNA_Ecto-sp13_S_contig7953.19246.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7953.19246.1 vs. uniprot
Match: A0A6H5K0C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.840e-13
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    4 AIEEKVLGPEHPSLATTLNNRAGLLTAQGKYTEADPLYVRA 126
            AI+EKVLGP+HPSLATTLNNRAGLL AQGKY EA+PLY R+
Sbjct:   84 AIKEKVLGPDHPSLATTLNNRAGLLEAQGKYVEAEPLYERS 124
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BLAST of mRNA_Ecto-sp13_S_contig7953.19246.1 vs. uniprot
Match: A0A7S3NNH9_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNH9_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.400e-9
Identity = 31/43 (72.09%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    7 IEEKVLGPEHPSLATTLNNRAGLLTAQGKYTEADPLYVRAIEI 135
            I EK LGP HP LAT LNN AGLL  QGKY EA  LY RAIEI
Sbjct:    2 IGEKTLGPNHPDLATRLNNLAGLLENQGKYDEAKLLYERAIEI 44
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BLAST of mRNA_Ecto-sp13_S_contig7953.19246.1 vs. uniprot
Match: A0A7S3K3F8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3F8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.400e-9
Identity = 31/43 (72.09%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    7 IEEKVLGPEHPSLATTLNNRAGLLTAQGKYTEADPLYVRAIEI 135
            I EK LGP HP LAT LNN AGLL  QGKY EA  LY RAIEI
Sbjct:    2 IGEKTLGPNHPDLATRLNNLAGLLENQGKYDEAKLLYERAIEI 44
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BLAST of mRNA_Ecto-sp13_S_contig7953.19246.1 vs. uniprot
Match: A0A7S3NQ03_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NQ03_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.470e-9
Identity = 31/43 (72.09%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    7 IEEKVLGPEHPSLATTLNNRAGLLTAQGKYTEADPLYVRAIEI 135
            I EK LGP HP LAT LNN AGLL  QGKY EA  LY RAIEI
Sbjct:    2 IGEKTLGPNHPDLATRLNNLAGLLENQGKYDEAKLLYERAIEI 44
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BLAST of mRNA_Ecto-sp13_S_contig7953.19246.1 vs. uniprot
Match: A0A7S3NN98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NN98_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 7.170e-9
Identity = 31/43 (72.09%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    7 IEEKVLGPEHPSLATTLNNRAGLLTAQGKYTEADPLYVRAIEI 135
            I EK LGP HP LAT LNN AGLL  QGKY EA  LY RAIEI
Sbjct:    2 IGEKTLGPNHPDLATRLNNLAGLLENQGKYDEAKLLYERAIEI 44
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BLAST of mRNA_Ecto-sp13_S_contig7953.19246.1 vs. uniprot
Match: A0A256BF49_9CYAN (Uncharacterized protein n=1 Tax=Pseudanabaena sp. SR411 TaxID=1980935 RepID=A0A256BF49_9CYAN)

HSP 1 Score: 57.4 bits (137), Expect = 1.120e-8
Identity = 27/44 (61.36%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    4 AIEEKVLGPEHPSLATTLNNRAGLLTAQGKYTEADPLYVRAIEI 135
            +I E+ LG +HPS+A +LNN A L  AQGKY+EA+PLY+RAI+I
Sbjct:    5 SILERQLGADHPSVAASLNNLALLYEAQGKYSEAEPLYLRAIQI 48
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BLAST of mRNA_Ecto-sp13_S_contig7953.19246.1 vs. uniprot
Match: B0JTC7_MICAN (Kinesin light chain 1 n=1 Tax=Microcystis aeruginosa (strain NIES-843 / IAM M-2473) TaxID=449447 RepID=B0JTC7_MICAN)

HSP 1 Score: 56.6 bits (135), Expect = 7.870e-8
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   22 LGPEHPSLATTLNNRAGLLTAQGKYTEADPLYVRAIEIR 138
            LG EHP +AT+LNN A L  AQGKY EA+PLY+RA+ IR
Sbjct:    5 LGEEHPDVATSLNNLADLYRAQGKYAEAEPLYLRALAIR 43
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BLAST of mRNA_Ecto-sp13_S_contig7953.19246.1 vs. uniprot
Match: UPI001031022E (tetratricopeptide repeat protein n=1 Tax=Microcystis aeruginosa TaxID=1126 RepID=UPI001031022E)

HSP 1 Score: 54.7 bits (130), Expect = 1.180e-7
Identity = 22/41 (53.66%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   13 EKVLGPEHPSLATTLNNRAGLLTAQGKYTEADPLYVRAIEI 135
            +++LG  HP +AT+LNN AGL  +QG+YTEA+PLY+ A+++
Sbjct:    2 KRLLGDNHPHVATSLNNLAGLYDSQGRYTEAEPLYLEALDL 42
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BLAST of mRNA_Ecto-sp13_S_contig7953.19246.1 vs. uniprot
Match: A0A084Y082_9PROT (Photosystem I assembly protein Ycf3 n=1 Tax=Candidatus Accumulibacter sp. SK-01 TaxID=1457154 RepID=A0A084Y082_9PROT)

HSP 1 Score: 58.5 bits (140), Expect = 1.240e-7
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    4 AIEEKVLGPEHPSLATTLNNRAGLLTAQGKYTEADPLYVRAI 129
            AI EK LGPEHP +AT+LNN AGL  AQG+Y +A+PL  RA+
Sbjct:    2 AIYEKALGPEHPYMATSLNNLAGLYNAQGRYADAEPLNRRAL 43
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BLAST of mRNA_Ecto-sp13_S_contig7953.19246.1 vs. uniprot
Match: A0A355B128_9BACT (Pilus assembly protein PilF (Fragment) n=1 Tax=Nitrospinae bacterium TaxID=2026769 RepID=A0A355B128_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 1.760e-7
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:   13 EKVLGPEHPSLATTLNNRAGLLTAQGKYTEADPLYVRAIEI 135
            EK LGPEHP +AT LNN A +L AQG + EA+PLY R + I
Sbjct:    1 EKALGPEHPDVATGLNNLASVLQAQGLFKEAEPLYKRTLSI 41
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7953.19246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0C4_9PHAE2.840e-1382.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3NNH9_9STRA2.400e-972.09Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S3K3F8_9STRA2.400e-972.09Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3NQ03_9STRA6.470e-972.09Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S3NN98_9STRA7.170e-972.09Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A256BF49_9CYAN1.120e-861.36Uncharacterized protein n=1 Tax=Pseudanabaena sp. ... [more]
B0JTC7_MICAN7.870e-866.67Kinesin light chain 1 n=1 Tax=Microcystis aerugino... [more]
UPI001031022E1.180e-753.66tetratricopeptide repeat protein n=1 Tax=Microcyst... [more]
A0A084Y082_9PROT1.240e-764.29Photosystem I assembly protein Ycf3 n=1 Tax=Candid... [more]
A0A355B128_9BACT1.760e-760.98Pilus assembly protein PilF (Fragment) n=1 Tax=Nit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7953contigEcto-sp13_S_contig7953:609..1637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size342
Hectar predicted targeting categoryother localisation
Exons3
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464066.521897-CDS-Ecto-sp13_S_contig7953:609..7351681464066.521897-CDS-Ecto-sp13_S_contig7953:609..735Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7953 610..735 -
1681464066.5321808-CDS-Ecto-sp13_S_contig7953:1196..13221681464066.5321808-CDS-Ecto-sp13_S_contig7953:1196..1322Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7953 1197..1322 -
1681464066.5414274-CDS-Ecto-sp13_S_contig7953:1550..16371681464066.5414274-CDS-Ecto-sp13_S_contig7953:1550..1637Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7953 1551..1637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7953.19246.1prot_Ecto-sp13_S_contig7953.19246.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7953 610..1637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7953.19246.1

>prot_Ecto-sp13_S_contig7953.19246.1 ID=prot_Ecto-sp13_S_contig7953.19246.1|Name=mRNA_Ecto-sp13_S_contig7953.19246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
QAIEEKVLGPEHPSLATTLNNRAGLLTAQGKYTEADPLYVRAIEIREGIL
GADHPDFAISLGTRGQLLKAQGDYAGAESLNRRAQEIFEKSLGPNHPNVA
TAISNRASLLEAQ
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mRNA from alignment at Ecto-sp13_S_contig7953:609..1637-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7953.19246.1 ID=mRNA_Ecto-sp13_S_contig7953.19246.1|Name=mRNA_Ecto-sp13_S_contig7953.19246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1029bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7953:609..1637- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGATCGAAGAGAAAGTTCTAGGCCCCGAGCACCCAAGTCTGGCCAC
AACACTCAACAACCGGGCGGGGTTGTTGACAGCGCAGGTGAGAGCCAGAG
TGTGCTTCTGGAAGCATCTAGAAGAGAAACCTCCGCAGTTCTAGATTCTG
CGTTGTATCGCCATATGACGCTGCCACGCTGTCGAATGCATTCCAGGGCA
AGTTCGCTGATGCCGCCCCACCTCGTGGGAGGTCATTGTTGGCACATATT
ATATATCTATATTTGTGTGTGTTCTGAGGAATTCCCTGATGCCCGTGCTC
GCCCTTCGCTTGCAGGGAAAGTACACGGAAGCCGATCCCTTGTACGTGCG
AGCCATAGAGATCAGGGAGGGTATTCTCGGCGCTGATCATCCCGATTTCG
CCATTTCGCTTGGTACCCGGGGGCAATTGCTGAAGGCACAGGTGCGTGTG
ATTGTCCCACCTATTTTGGCGCCAGTCTTGACACCATTCGGTTCTGTGTT
AATCGTAACGTATCGGCCGGGGTCACACAGAAGCTTTCGTTTTTTTGTTT
CACTGCCCAACCGTTTCTATCTGTGGCTCAGGCCTTTTGGGGTTTTGAAT
GGACAAGGTTTCGGCAGCAACTTCCCTCTATTGCACTCACGAATACATCG
CTTTCCACCACAAAGTCGCAAGTGAATCACCCTCGGTGATTGATGTACCC
TAGACCGTGCAGTTTGTAGGCTAACGAGGATACTACGAAACCACCGGATT
ACCGGGGGAGATCGGAAATCTGCGGAGAACGTTAGTTGTGATATTCCGTT
CGTTCTGATGCTCAACAACAGGCTAGGTTGTTGACACATTCAGGCGTGAG
CAAGTAAAATTTCCCATCGTAGTTTGACACTCTTTTATGACTTGATCAAC
AGGGTGACTACGCGGGAGCGGAGTCTCTGAACCGGAGGGCTCAAGAGATC
TTCGAGAAATCTTTGGGCCCGAACCATCCCAACGTAGCCACTGCGATCAG
CAACCGGGCGTCGTTGTTGGAGGCACAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7953:609..1637-

>mRNA_Ecto-sp13_S_contig7953.19246.1 ID=mRNA_Ecto-sp13_S_contig7953.19246.1|Name=mRNA_Ecto-sp13_S_contig7953.19246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7953:609..1637- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGATCGAAGAGAAAGTTCTAGGCCCCGAGCACCCAAGTCTGGCCAC
AACACTCAACAACCGGGCGGGGTTGTTGACAGCGCAGGGAAAGTACACGG
AAGCCGATCCCTTGTACGTGCGAGCCATAGAGATCAGGGAGGGTATTCTC
GGCGCTGATCATCCCGATTTCGCCATTTCGCTTGGTACCCGGGGGCAATT
GCTGAAGGCACAGGGTGACTACGCGGGAGCGGAGTCTCTGAACCGGAGGG
CTCAAGAGATCTTCGAGAAATCTTTGGGCCCGAACCATCCCAACGTAGCC
ACTGCGATCAGCAACCGGGCGTCGTTGTTGGAGGCACAG
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