mRNA_Ecto-sp13_S_contig795.19241.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig795.19241.1
Unique NamemRNA_Ecto-sp13_S_contig795.19241.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig795.19241.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 9.600e-23
Identity = 48/60 (80.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 KKTVFQGITFEELKTKWQEIVDELRRNGITVTNMENALEGALSIREYDGTLIRHEKFVFL 180
            K  V+QGIT EEL TKWQE VDEL R GITVTNM NALEGALSIRE+DG+L+RHEKFVFL
Sbjct:  684 KADVYQGITVEELGTKWQETVDELERRGITVTNMMNALEGALSIREFDGSLVRHEKFVFL 743
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BLAST of mRNA_Ecto-sp13_S_contig795.19241.1 vs. uniprot
Match: A0A6H5K516_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 8.470e-22
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:   10 VFQGITFEELKTKWQEIVDELRRNGITVTNMENALEGALSIREYDGTLIRHEKFVFL 180
            V+QGIT EEL TKWQE VDEL R GITVTN +NALEG+LS+RE+DG+L+RHEKFVFL
Sbjct:  169 VYQGITVEELSTKWQETVDELERRGITVTNAKNALEGSLSVREFDGSLVRHEKFVFL 225
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BLAST of mRNA_Ecto-sp13_S_contig795.19241.1 vs. uniprot
Match: A0A6H5L923_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L923_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 3.220e-21
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 KKTVFQGITFEELKTKWQEIVDELRRNGITVTNMENALEGALSIREYDGTLIRHEKFVFL 180
            K  V+QGIT EE+ TKW E VDEL R GITVTN ENALEGALS+RE+DG+L+ HEKFVFL
Sbjct:  243 KTDVYQGITVEEMGTKWHETVDELERRGITVTNAENALEGALSVREFDGSLVHHEKFVFL 302
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BLAST of mRNA_Ecto-sp13_S_contig795.19241.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 4.030e-21
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 KKTVFQGITFEELKTKWQEIVDELRRNGITVTNMENALEGALSIREYDGTLIRHEKFVFL 180
            K TV+QGIT EEL  KWQE VD L R GITVTN ENALEGALSIRE+DG+L+ HEKFVFL
Sbjct:  618 KTTVYQGITVEELSAKWQETVDGLGRRGITVTNAENALEGALSIREFDGSLVPHEKFVFL 677
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BLAST of mRNA_Ecto-sp13_S_contig795.19241.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.910e-20
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 KKTVFQGITFEELKTKWQEIVDELRRNGITVTNMENALEGALSIREYDGTLIRHEKFVFL 180
            K  V+QGIT EEL TKWQE VDEL R GITVTN +NALEGALS+RE+DG+L+R E FVFL
Sbjct:  305 KTDVYQGITVEELGTKWQETVDELERRGITVTNAKNALEGALSVREFDGSLVRRENFVFL 364
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BLAST of mRNA_Ecto-sp13_S_contig795.19241.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 3.550e-20
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    7 TVFQGITFEELKTKWQEIVDELRRNGITVTNMENALEGALSIREYDGTLIRHEKFVFL 180
            TV+QGIT EEL  +WQ  VDEL R GITVTN ENALEGALSIRE+DG+L+ HEKFVFL
Sbjct:  451 TVYQGITVEELSARWQGTVDELGRRGITVTNAENALEGALSIREFDGSLVCHEKFVFL 508
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BLAST of mRNA_Ecto-sp13_S_contig795.19241.1 vs. uniprot
Match: A0A6H5L0H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H4_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.620e-20
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 KKTVFQGITFEELKTKWQEIVDELRRNGITVTNMENALEGALSIREYDGTLIRHEKFVFL 180
            K  V+QGIT EEL TKWQ  VDEL R GITVTN +NALEGALSIRE+DG+L+R +KFVFL
Sbjct:  132 KTDVYQGITVEELGTKWQGTVDELERRGITVTNAKNALEGALSIREFDGSLVRRDKFVFL 191
[Close]
BLAST of mRNA_Ecto-sp13_S_contig795.19241.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.240e-19
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:   10 VFQGITFEELKTKWQEIVDELRRNGITVTNMENALEGALSIREYDGTLIRHEKFVFL 180
            V+QGIT E+L  KWQ+IVDEL R GI VTN +NALEGALSIRE+DG+L+RHE FVFL
Sbjct:  423 VYQGITVEDLSKKWQKIVDELERRGIIVTNAKNALEGALSIREFDGSLVRHETFVFL 479
[Close]
BLAST of mRNA_Ecto-sp13_S_contig795.19241.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 8.030e-19
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 KKTVFQGITFEELKTKWQEIVDELRRNGITVTNMENALEGALSIREYDGTLIRHEKFVFL 180
            K  V+Q I  EEL T W+E VDEL + GI VTN ENALEGALSIRE+DG+L+RHEKFVFL
Sbjct:  400 KTNVYQAIKVEELGTNWRETVDELGKRGIVVTNAENALEGALSIREFDGSLVRHEKFVFL 459
[Close]
BLAST of mRNA_Ecto-sp13_S_contig795.19241.1 vs. uniprot
Match: A0A6H5KSA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA3_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.760e-18
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 KKTVFQGITFEELKTKWQEIVDELRRNGITVTNMENALEGALSIREYDGTLIRHEKFVFL 180
            K T++QGIT EEL  KWQ  VD+L R GI  TN +NALEGALSIRE+DG+L+ HEKFVFL
Sbjct:  312 KTTMYQGITVEELSAKWQGTVDDLGRRGIMFTNAKNALEGALSIREFDGSLVCHEKFVFL 371
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig795.19241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF46_ECTSI9.600e-2380.00LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K516_9PHAE8.470e-2277.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L923_9PHAE3.220e-2173.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJS7_ECTSI4.030e-2176.67LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K1K4_9PHAE1.910e-2073.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L650_9PHAE3.550e-2075.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0H4_9PHAE6.620e-2073.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G431_ECTSI1.240e-1973.68LRR-GTPase of the ROCO family, incomplete sequence... [more]
D7FZA1_ECTSI8.030e-1970.00LRR-GTPase of the ROCO family, incomplete sequence... [more]
A0A6H5KSA3_9PHAE3.760e-1868.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig795contigEcto-sp13_S_contig795:1141..1575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score100.1
Seed ortholog evalue3.6e-19
Seed eggNOG ortholog2880.D8LF46
Model size182
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
Exons2
EggNOG OGs2CYK8@1,2S4YE@2759
EC3.2.1.21
Cds size180
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464066.3552535-CDS-Ecto-sp13_S_contig795:1141..11871681464066.3552535-CDS-Ecto-sp13_S_contig795:1141..1187Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig795 1142..1187 -
1681464066.3674343-CDS-Ecto-sp13_S_contig795:1441..15751681464066.3674343-CDS-Ecto-sp13_S_contig795:1441..1575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig795 1442..1575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig795.19241.1prot_Ecto-sp13_S_contig795.19241.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig795 1142..1575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig795.19241.1

>prot_Ecto-sp13_S_contig795.19241.1 ID=prot_Ecto-sp13_S_contig795.19241.1|Name=mRNA_Ecto-sp13_S_contig795.19241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
KKTVFQGITFEELKTKWQEIVDELRRNGITVTNMENALEGALSIREYDGT
LIRHEKFVFL
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mRNA from alignment at Ecto-sp13_S_contig795:1141..1575-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig795.19241.1 ID=mRNA_Ecto-sp13_S_contig795.19241.1|Name=mRNA_Ecto-sp13_S_contig795.19241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig795:1141..1575- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGAAAACCGTGTTTCAGGGGATCACGTTTGAGGAACTCAAGACTAAATG
GCAGGAAATAGTTGATGAGCTTCGAAGGAACGGGATCACTGTCACAAACA
TGGAGAATGCTTTGGAGGGAGCTCTCTCGATCAGGTGAATCGATCAAATG
GGCATATCGACGTGGGGACCACCTCTTCACCGCGCTCCTAGTATCCATTA
TTGGTGCAGTATCGCGTTGTTCGGTGCACTTGAAGCAAACGGTGTCGTCT
TGATATCGATTACTGTGTTGGTCCTGTCGGACAAGGCGTTTCGACGCCGC
TTCCCCGAAAGGTTCCACATGGTTCGTGAACTCATCCTTGGCGGATTTTC
CAACTCGATTTTGTTTTTTTACCATGTTGTGCCTGTAGGGAGTACGACGG
AACCCTCATTCGCCACGAGAAGTTTGTGTTTCTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig795:1141..1575-

>mRNA_Ecto-sp13_S_contig795.19241.1 ID=mRNA_Ecto-sp13_S_contig795.19241.1|Name=mRNA_Ecto-sp13_S_contig795.19241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig795:1141..1575- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGAAAACCGTGTTTCAGGGGATCACGTTTGAGGAACTCAAGACTAAATG
GCAGGAAATAGTTGATGAGCTTCGAAGGAACGGGATCACTGTCACAAACA
TGGAGAATGCTTTGGAGGGAGCTCTCTCGATCAGGGAGTACGACGGAACC
CTCATTCGCCACGAGAAGTTTGTGTTTCTG
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