mRNA_Ecto-sp13_S_contig795.19242.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig795.19242.1
Unique NamemRNA_Ecto-sp13_S_contig795.19242.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig795.19242.1 vs. uniprot
Match: A0A6H5KJL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL6_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.160e-7
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = -3 
Query:    2 SHYSLPRQVAYTGLLQMFLTPRSVCVLVCNAG 97
            +H S  +QVAYTGLLQMFLTPRSVCVLVCNAG
Sbjct:  120 NHISHVQQVAYTGLLQMFLTPRSVCVLVCNAG 151
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BLAST of mRNA_Ecto-sp13_S_contig795.19242.1 vs. uniprot
Match: A0A6H5KSA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA3_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.410e-6
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = -3 
Query:    2 YSLPRQVAYTGLLQMFLTPRSVCVLVCNAG 91
            Y    QVAYTGLLQMFLTPRSVCVLVCNAG
Sbjct:  120 YDCAGQVAYTGLLQMFLTPRSVCVLVCNAG 149
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BLAST of mRNA_Ecto-sp13_S_contig795.19242.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.520e-6
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = -3 
Query:    2 YSLPRQVAYTGLLQMFLTPRSVCVLVCNAG 91
            Y    QVAYTGLLQMFLTPRSVCVLVCNAG
Sbjct:  227 YDCAGQVAYTGLLQMFLTPRSVCVLVCNAG 256
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BLAST of mRNA_Ecto-sp13_S_contig795.19242.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 2.600e-6
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = -3 
Query:    2 YSLPRQVAYTGLLQMFLTPRSVCVLVCNAG 91
            Y    QVAYTGLLQMFLTPRSVCVLVCNAG
Sbjct:  178 YDCAGQVAYTGLLQMFLTPRSVCVLVCNAG 207
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BLAST of mRNA_Ecto-sp13_S_contig795.19242.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 2.650e-6
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = -3 
Query:    2 YSLPRQVAYTGLLQMFLTPRSVCVLVCNAG 91
            Y    QVAYTGLLQMFLTPRSVCVLVCNAG
Sbjct:  461 YDCAGQVAYTGLLQMFLTPRSVCVLVCNAG 490
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BLAST of mRNA_Ecto-sp13_S_contig795.19242.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 2.650e-6
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = -3 
Query:    2 YSLPRQVAYTGLLQMFLTPRSVCVLVCNAG 91
            Y    QVAYTGLLQMFLTPRSVCVLVCNAG
Sbjct:  398 YDCAGQVAYTGLLQMFLTPRSVCVLVCNAG 427
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BLAST of mRNA_Ecto-sp13_S_contig795.19242.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 6.500e-6
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = -3 
Query:    2 YSLPRQVAYTGLLQMFLTPRSVCVLVCNAG 91
            Y    QVAYTGLLQMFLTPR+VCVLVCNAG
Sbjct:  247 YDCAGQVAYTGLLQMFLTPRAVCVLVCNAG 276
[Close]
BLAST of mRNA_Ecto-sp13_S_contig795.19242.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.630e-5
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = -3 
Query:    2 QVAYTGLLQMFLTPRSVCVLVCNAG 76
            +VAYTGLLQMFLTPRSVCVLVCNAG
Sbjct:   68 EVAYTGLLQMFLTPRSVCVLVCNAG 92
[Close]
BLAST of mRNA_Ecto-sp13_S_contig795.19242.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.650e-5
Identity = 25/30 (83.33%), Postives = 25/30 (83.33%), Query Frame = -3 
Query:    2 YSLPRQVAYTGLLQMFLTPRSVCVLVCNAG 91
            Y    QVAYTGLLQMFLTPRSVCVLVCNA 
Sbjct:  197 YDCAGQVAYTGLLQMFLTPRSVCVLVCNAA 226
[Close]
BLAST of mRNA_Ecto-sp13_S_contig795.19242.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.650e-5
Identity = 26/33 (78.79%), Postives = 26/33 (78.79%), Query Frame = -3 
Query:    5 FCSHYSLPRQVAYTGLLQMFLTPRSVCVLVCNA 103
            F   Y    QVAYTGLLQMFLTPRSVCVLVCNA
Sbjct:  287 FVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNA 319
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig795.19242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KJL6_9PHAE4.160e-784.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSA3_9PHAE2.410e-686.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L650_9PHAE2.520e-686.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZA1_ECTSI2.600e-686.67LRR-GTPase of the ROCO family, incomplete sequence... [more]
D8LF46_ECTSI2.650e-686.67LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LJS7_ECTSI2.650e-686.67LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KSZ8_9PHAE6.500e-683.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1K4_9PHAE1.630e-596.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G431_ECTSI1.650e-583.33LRR-GTPase of the ROCO family, incomplete sequence... [more]
D7FUC9_ECTSI1.650e-578.79LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig795contigEcto-sp13_S_contig795:2792..3249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size460
Hectar predicted targeting categoryother localisation
Exons1
Cds size456
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464066.3235717-CDS-Ecto-sp13_S_contig795:2791..32471681464066.3235717-CDS-Ecto-sp13_S_contig795:2791..3247Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig795 2792..3247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig795.19242.1prot_Ecto-sp13_S_contig795.19242.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig795 2792..3247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig795.19242.1

>prot_Ecto-sp13_S_contig795.19242.1 ID=prot_Ecto-sp13_S_contig795.19242.1|Name=mRNA_Ecto-sp13_S_contig795.19242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp
PPRCTQARTPTVASRTSAAARCRPPVEGESNVSKTASSIDNVASHPCGVY
LYPINAQCLIKLFEVLRETGATSESRSHMHYSRYAPDKTTLERGGEPTFG
AKATTYKVWSICEAPPQLLHTQVTKLFLSSVRKVLNYIGEHPLAPTLCSA
QM
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mRNA from alignment at Ecto-sp13_S_contig795:2792..3249+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig795.19242.1 ID=mRNA_Ecto-sp13_S_contig795.19242.1|Name=mRNA_Ecto-sp13_S_contig795.19242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=458bp|location=Sequence derived from alignment at Ecto-sp13_S_contig795:2792..3249+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCCGCGTTGCACACAAGCACGCACACCGACCGTGGCGTCAAGAACATC
TGCAGCAGCCCGGTGTAGGCCACCTGTCGAGGGAGAGAGTAATGTGAGCA
AAACAGCAAGCAGCATTGATAACGTGGCCTCTCATCCCTGCGGAGTGTAC
CTCTACCCAATTAACGCACAGTGCCTCATCAAACTATTCGAGGTCCTCCG
CGAGACCGGAGCCACCTCCGAATCGAGAAGCCACATGCACTACTCCAGAT
ATGCCCCTGACAAAACCACGCTAGAGCGGGGGGGGGAGCCCACATTCGGC
GCAAAAGCAACTACTTACAAAGTGTGGTCCATCTGCGAAGCACCACCTCA
ATTACTGCACACTCAAGTGACGAAATTATTCTTGTCTTCTGTACGAAAAG
TGCTGAACTACATTGGGGAACACCCGTTGGCACCTACCCTGTGTAGCGCA
CAGATGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig795:2792..3249+

>mRNA_Ecto-sp13_S_contig795.19242.1 ID=mRNA_Ecto-sp13_S_contig795.19242.1|Name=mRNA_Ecto-sp13_S_contig795.19242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig795:2792..3249+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCCGCGTTGCACACAAGCACGCACACCGACCGTGGCGTCAAGAACATC
TGCAGCAGCCCGGTGTAGGCCACCTGTCGAGGGAGAGAGTAATGTGAGCA
AAACAGCAAGCAGCATTGATAACGTGGCCTCTCATCCCTGCGGAGTGTAC
CTCTACCCAATTAACGCACAGTGCCTCATCAAACTATTCGAGGTCCTCCG
CGAGACCGGAGCCACCTCCGAATCGAGAAGCCACATGCACTACTCCAGAT
ATGCCCCTGACAAAACCACGCTAGAGCGGGGGGGGGAGCCCACATTCGGC
GCAAAAGCAACTACTTACAAAGTGTGGTCCATCTGCGAAGCACCACCTCA
ATTACTGCACACTCAAGTGACGAAATTATTCTTGTCTTCTGTACGAAAAG
TGCTGAACTACATTGGGGAACACCCGTTGGCACCTACCCTGTGTAGCGCA
CAGATG
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