mRNA_Ecto-sp13_S_contig123.1924.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig123.1924.1
Unique NamemRNA_Ecto-sp13_S_contig123.1924.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig123.1924.1 vs. uniprot
Match: A0A6H5KRW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW9_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 1.690e-102
Identity = 159/178 (89.33%), Postives = 164/178 (92.13%), Query Frame = 1 
Query:    1 LNKRTMDETALCDSILQFAGGQGLPAAGNSPYVSVPATGGSADAAAGELADQTPFKLVTFGGTAEPSACTGSTTTAIQPRHLQKEGLMRAFVGTKLREFNMRGVEAGMSMCHVEKKSGKVLNTQGRRQMRAELSGPYGGKGSSLRRGKTSGPGRQVVGDVRSGGFVEKKTKSGVPDSS 534
            +NKRT+DETALCDSILQFA GQGLP AGNSPYVSVPATGGSADAAAGEL DQTPFK+  FGG AEP+A T STTTAIQ +HLQKEGLMRAFVGTKL EFNMRGVEAGMS CHVEKK GKVLNTQGRRQMRAELSGPYG KGSSLRRGKTSGPGRQVVGDVRSGGFVEK TKSGVPDSS
Sbjct:    1 MNKRTLDETALCDSILQFADGQGLPVAGNSPYVSVPATGGSADAAAGELVDQTPFKIDNFGGPAEPNAATASTTTAIQ-QHLQKEGLMRAFVGTKLGEFNMRGVEAGMSWCHVEKKPGKVLNTQGRRQMRAELSGPYGEKGSSLRRGKTSGPGRQVVGDVRSGGFVEKNTKSGVPDSS 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig123.1924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRW9_9PHAE1.690e-10289.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig123contigEcto-sp13_S_contig123:3992..6019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size561
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-15_002410.1
Cds size546
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462654.115017-UTR-Ecto-sp13_S_contig123:3991..40061681462654.115017-UTR-Ecto-sp13_S_contig123:3991..4006Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig123 3992..4006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462654.1248214-CDS-Ecto-sp13_S_contig123:4006..42761681462654.1248214-CDS-Ecto-sp13_S_contig123:4006..4276Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig123 4007..4276 +
1681462654.1338642-CDS-Ecto-sp13_S_contig123:5743..60191681462654.1338642-CDS-Ecto-sp13_S_contig123:5743..6019Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig123 5744..6019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig123.1924.1prot_Ecto-sp13_S_contig123.1924.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig123 4007..6019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig123.1924.1

>prot_Ecto-sp13_S_contig123.1924.1 ID=prot_Ecto-sp13_S_contig123.1924.1|Name=mRNA_Ecto-sp13_S_contig123.1924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=182bp
MDETALCDSILQFAGGQGLPAAGNSPYVSVPATGGSADAAAGELADQTPF
KLVTFGGTAEPSACTGSTTTAIQPRHLQKEGLMRAFVGTKLREFNMRGVE
AGMSMCHVEKKSGKVLNTQGRRQMRAELSGPYGGKGSSLRRGKTSGPGRQ
VVGDVRSGGFVEKKTKSGVPDSSYPPASGDR*
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mRNA from alignment at Ecto-sp13_S_contig123:3992..6019+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig123.1924.1 ID=mRNA_Ecto-sp13_S_contig123.1924.1|Name=mRNA_Ecto-sp13_S_contig123.1924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2028bp|location=Sequence derived from alignment at Ecto-sp13_S_contig123:3992..6019+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTAAACAAGCGTACAATGGATGAGACAGCCTTGTGCGATTCAATTCTCCA
GTTCGCCGGCGGACAGGGTCTCCCGGCCGCGGGGAATTCTCCCTATGTTT
CTGTCCCCGCCACGGGAGGCTCAGCTGATGCAGCAGCTGGCGAGCTGGCC
GATCAAACACCATTCAAGTTAGTCACCTTCGGCGGGACTGCCGAGCCTAG
CGCTTGCACCGGCTCTACGACGACTGCAATTCAACCACGACACCTGCAGA
AGGAGGGATTGATGCGGGCTTTCGTTGGCACCAAGGTAAGGCGGTTGAGG
TTTAACAGCAGTGATGGAAAAGAGGGCTGTAGAAAGCCTATATCTCAACT
GGAGGTGGTTCGAAGTTGGTTTGAAACGTTCATCGTGAAGAGCACTTGCT
TGCGTGGTTTCGGCCCGTCGACAGTCGAAAAGGGCTCACCGACTTAACTG
CACACGCAAGGGTGCTGGTTTTGGAAAGTTTAAGATCCGCCGGTTCCAGC
GTTGTTTACCTACATCAGAGCGGATACGCTGCCCCGCCAAATTTTTGGGG
CCCGTTTTGACTGTTCTCAACCCACGGAATAGCTGGGCCGGTTGACACAA
CATGTGTTGTAGTTACATTGAACACAGTGGAAGCGAATAAATGATAGGAG
ATTTGTCCGGCGCCCACGTATTTTTATAGCAAACCCTGTTGGGAGTAGAC
GCAGCAATTTCTGACCTAGAGAAATACCCTGAGGTGTCCACCATGTCACT
CATGATTAGCAGCGGCTTACGGGATCTAAACTTGTTCGAAAGGGAGCTCA
TTGAAGACAGAGGAGCGGACAACCGTTTTTGTCGCGAAAAATAAATATAA
ATACAGCAAGATTCGTGCTGTACCCGTTGGAGATACCCACAGTGATGTTC
TCGTTTTTCTGACGTCGACAGACTTTTTGATCCACTGCTGTCACAATGCG
CCGCTCTGGACTTGGACGAAAGAAATGTTTTTAGTCACAACAAGTGCGTT
TTTGAGTAGGAGTCGGCTGGTATGCTAGAGAACCTTATTTTGAGCAAGTT
AACGCACAGCAGTTTGTGAAATTTTTCTGTGTCTAGAGTTGCGGTCTTGC
TAATGCGTCTCGAGCTGTTGTAGATACAACCAAGACGCCTAGGAGATACA
TCCTCGTCTTACTGCTCGGGGCCTCCAGCCTGTAACTGGTATGCACCTGC
AAGCAACGCGATCACGGCGCACTCGGGAGGCGGGAATGATGCCTTGGGTG
CCTGTCTTGCAAAGCATAGCTTACGGACGGGATAGCCAGTAGGGCCGGGC
TGGCTTGAATGTACGGATGCAAAGAACGGAAAGTGCCGTTTCAAACAGAA
AGTCATCGCGGCCAGACGAACAGCTTCGAGGAAGGTTTCGGGCCCACAGA
GTGTATCTCGTCAAGAACACAGCTTTGGGGGCAGATGATGAAGTGTGGTC
CATGCTTGCGGCCAAGAAATCGGGACATGAGTATCTGCAGTGAAGGTTGT
TCCTAATCACAATCGTATGTTGACGTTTGCTTTCGAATTGGCCTTCAACC
ACGCCGGTATGTGCCCAGCGCATCGCCCGGCGCTGTCCACGGGGACCGGC
GCTATTAAATGTACAGAATGACTTGGTGATTCAGTCTGTGCCAAGCAATT
TCACCCGCGCTCAACAGCAATGCTTTACTGTAAGTTCAATGATGCCCGCG
TCAACGTATCTTTGACTTGCTTTTTCGACCTCCTGCGCGCGCTACTGGCC
AGCTTCGGGAATTCAATATGCGGGGGGTTGAGGCGGGCATGTCGATGTGC
CATGTCGAAAAGAAGTCAGGGAAGGTTTTGAATACGCAAGGCCGGCGGCA
AATGCGGGCGGAGCTCAGCGGCCCGTACGGCGGGAAAGGGTCGTCACTGC
GGAGGGGGAAAACAAGTGGACCCGGACGCCAGGTGGTGGGCGACGTTCGG
AGTGGTGGCTTTGTTGAAAAGAAAACAAAATCGGGGGTGCCGGACAGCTC
ATATCCGCCTGCCTCGGGAGATCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig123:3992..6019+

>mRNA_Ecto-sp13_S_contig123.1924.1 ID=mRNA_Ecto-sp13_S_contig123.1924.1|Name=mRNA_Ecto-sp13_S_contig123.1924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig123:3992..6019+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGAGACAGCCTTGTGCGATTCAATTCTCCAGTTCGCCGGCGGACA
GGGTCTCCCGGCCGCGGGGAATTCTCCCTATGTTTCTGTCCCCGCCACGG
GAGGCTCAGCTGATGCAGCAGCTGGCGAGCTGGCCGATCAAACACCATTC
AAGTTAGTCACCTTCGGCGGGACTGCCGAGCCTAGCGCTTGCACCGGCTC
TACGACGACTGCAATTCAACCACGACACCTGCAGAAGGAGGGATTGATGC
GGGCTTTCGTTGGCACCAAGCTTCGGGAATTCAATATGCGGGGGGTTGAG
GCGGGCATGTCGATGTGCCATGTCGAAAAGAAGTCAGGGAAGGTTTTGAA
TACGCAAGGCCGGCGGCAAATGCGGGCGGAGCTCAGCGGCCCGTACGGCG
GGAAAGGGTCGTCACTGCGGAGGGGGAAAACAAGTGGACCCGGACGCCAG
GTGGTGGGCGACGTTCGGAGTGGTGGCTTTGTTGAAAAGAAAACAAAATC
GGGGGTGCCGGACAGCTCATATCCGCCTGCCTCGGGAGATCGGTGA
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