mRNA_Ecto-sp13_S_contig79483.19240.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig79483.19240.1
Unique NamemRNA_Ecto-sp13_S_contig79483.19240.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig79483.19240.1 vs. uniprot
Match: A0A6H5K0V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V0_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 7.490e-25
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:   13 VTPDEQEEERLPEETKRRVAYVRSDAMHPMVSTPTWGYFLNLFELSRLLDLPADDL 180
            +TPDEQ+EE LPE TKRRVA+VRSDAMH MVSTPTWGYFLNLFELSRLLDLPADDL
Sbjct:   82 LTPDEQQEEELPENTKRRVAWVRSDAMHAMVSTPTWGYFLNLFELSRLLDLPADDL 137
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BLAST of mRNA_Ecto-sp13_S_contig79483.19240.1 vs. uniprot
Match: A0A6H5KB44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB44_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.830e-16
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:   67 VAYVRSDAMHPMVSTPTWGYFLNLFELSRLLDLPADDL 180
            VA+VRSDAMH MVSTPTWGYFLNLFELSR+LDLPADDL
Sbjct:  101 VAWVRSDAMHAMVSTPTWGYFLNLFELSRVLDLPADDL 138
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BLAST of mRNA_Ecto-sp13_S_contig79483.19240.1 vs. uniprot
Match: D8LNQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ4_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.500e-13
Identity = 37/46 (80.43%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   43 LPEETKRRVAYVRSDAMHPMVSTPTWGYFLNLFELSRLLDLPADDL 180
            LPE+ KR      SDAMH MVSTPTWGYFLNLFELSRLLDLPADDL
Sbjct:  164 LPEKKKR------SDAMHAMVSTPTWGYFLNLFELSRLLDLPADDL 203
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig79483.19240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K0V0_9PHAE7.490e-2589.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB44_9PHAE5.830e-1692.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ4_ECTSI1.500e-1380.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig79483contigEcto-sp13_S_contig79483:110..563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size183
Hectar predicted targeting categoryother localisation
Exons2
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464066.225202-CDS-Ecto-sp13_S_contig79483:111..2261681464066.225202-CDS-Ecto-sp13_S_contig79483:111..226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig79483 112..226 -
1681464066.2349074-CDS-Ecto-sp13_S_contig79483:498..5631681464066.2349074-CDS-Ecto-sp13_S_contig79483:498..563Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig79483 499..563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig79483.19240.1prot_Ecto-sp13_S_contig79483.19240.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig79483 112..563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig79483.19240.1

>prot_Ecto-sp13_S_contig79483.19240.1 ID=prot_Ecto-sp13_S_contig79483.19240.1|Name=mRNA_Ecto-sp13_S_contig79483.19240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
GSSTVTPDEQEEERLPEETKRRVAYVRSDAMHPMVSTPTWGYFLNLFELS
RLLDLPADDL
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mRNA from alignment at Ecto-sp13_S_contig79483:110..563-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig79483.19240.1 ID=mRNA_Ecto-sp13_S_contig79483.19240.1|Name=mRNA_Ecto-sp13_S_contig79483.19240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=454bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79483:110..563- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGTAGTACAGTTACGCCAGACGAACAAGAGGAAGAAAGGCTTCCGGA
GGAAACGAAACGGAGGTATGTTCTACGTTCAACCTTATTATGGTGCCTCT
GTGGGGTTACCAGTGGGTGGTCGTCGTGCTCTGATGACTACAAGGCACTG
CTGTGCAGGCGAGATGCGCACTACCATGTACTCGTCACGTGCCTTGATGT
TCTGCTGTTGACTACTCCTTTGCGACTACCATTATTTTATCGAGCACTAT
GCTGAGGGTGTTGGCTCATGCCACCTGAATATCCCTCTCGCGTCGCCGCG
CCGCGGTCATTTATTCTCTTGTTTATGCTTCACGCAGGGTGGCGTACGTT
CGGAGCGACGCGATGCACCCGATGGTGTCCACTCCAACGTGGGGGTACTT
CTTGAACTTGTTCGAGTTGTCAAGACTCCTAGATCTGCCAGCGGATGATC
TTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig79483:110..563-

>mRNA_Ecto-sp13_S_contig79483.19240.1 ID=mRNA_Ecto-sp13_S_contig79483.19240.1|Name=mRNA_Ecto-sp13_S_contig79483.19240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79483:110..563- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGTAGTACAGTTACGCCAGACGAACAAGAGGAAGAAAGGCTTCCGGA
GGAAACGAAACGGAGGGTGGCGTACGTTCGGAGCGACGCGATGCACCCGA
TGGTGTCCACTCCAACGTGGGGGTACTTCTTGAACTTGTTCGAGTTGTCA
AGACTCCTAGATCTGCCAGCGGATGATCTT
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