mRNA_Ecto-sp13_S_contig79464.19239.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig79464.19239.1
Unique NamemRNA_Ecto-sp13_S_contig79464.19239.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig79464.19239.1 vs. uniprot
Match: D7G953_ECTSI (Aprataxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G953_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 3.000e-14
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = -1 
Query:  333 LHMHIISQDFDSERLRMARHWNIFTTGSRLPHYRPCA 443
            LHMHIISQDFDSERLRM RHWNIFTTGSRL H RPCA
Sbjct:  140 LHMHIISQDFDSERLRMPRHWNIFTTGSRLLHCRPCA 176
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BLAST of mRNA_Ecto-sp13_S_contig79464.19239.1 vs. uniprot
Match: A0A6H5KUS4_9PHAE (HIT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS4_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.020e-6
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = -1 
Query:  366 LHMHIISQDFDSERLRMARHWNIFTT 443
            LHMHIISQDFDSER+RM RHWNIFTT
Sbjct:  141 LHMHIISQDFDSERMRMPRHWNIFTT 166
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BLAST of mRNA_Ecto-sp13_S_contig79464.19239.1 vs. uniprot
Match: A0A6H5K612_9PHAE (HIT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K612_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 7.140e-6
Identity = 32/70 (45.71%), Postives = 38/70 (54.29%), Query Frame = -1 
Query:  234 LHMHIISQDFDSERLRMARHWNIFTTGSRLPHYRPCA*NGCAR*LCVKAGGDRQETRRAWEREKGCGFPS 443
            LH+HIISQDFDSERL   +HWN FTTG+  P    C   G A      A G  +   R  E E   G+P+
Sbjct:  374 LHLHIISQDFDSERLTKRKHWNSFTTGTFFPG---CFLGGSA------AAGAWESRARQREAEGAGGYPA 434
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig79464.19239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G953_ECTSI3.000e-1491.89Aprataxin n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KUS4_9PHAE1.020e-692.31HIT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K612_9PHAE7.140e-645.71HIT domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig79464contigEcto-sp13_S_contig79464:103..545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size443
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464066.169422-UTR-Ecto-sp13_S_contig79464:102..1411681464066.169422-UTR-Ecto-sp13_S_contig79464:102..141Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig79464 103..141 +
1681464066.1986442-UTR-Ecto-sp13_S_contig79464:450..5451681464066.1986442-UTR-Ecto-sp13_S_contig79464:450..545Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig79464 451..545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464066.1889343-CDS-Ecto-sp13_S_contig79464:141..4501681464066.1889343-CDS-Ecto-sp13_S_contig79464:141..450Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig79464 142..450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig79464.19239.1prot_Ecto-sp13_S_contig79464.19239.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig79464 142..450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig79464.19239.1

>prot_Ecto-sp13_S_contig79464.19239.1 ID=prot_Ecto-sp13_S_contig79464.19239.1|Name=mRNA_Ecto-sp13_S_contig79464.19239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MGTRLEALQMPHVLHILARGVTRGYRSTNDGRSEFSIARTLQRSRGTSSV
TSVRYLNRIIHSLGQLGKPQPFSRSQALRVSWRSPPAFTHNYRAHPFQAH
GR*
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mRNA from alignment at Ecto-sp13_S_contig79464:103..545+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig79464.19239.1 ID=mRNA_Ecto-sp13_S_contig79464.19239.1|Name=mRNA_Ecto-sp13_S_contig79464.19239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=443bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79464:103..545+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATAACTCGACTACTGCTGTACCGTGCCGGTTTGCAGTGATGGGAACACG
TTTGGAAGCTCTTCAAATGCCACATGTCCTACATATATTAGCAAGAGGAG
TCACACGAGGCTATAGATCAACAAATGACGGACGTAGTGAGTTTTCGATC
GCCCGCACGCTGCAGCGTTCGCGAGGTACATCAAGCGTGACAAGCGTACG
ATACCTCAACCGAATAATCCACTCTCTAGGGCAACTAGGGAAGCCGCAGC
CCTTCTCCCGCTCCCAAGCCCTGCGTGTTTCCTGGCGATCTCCGCCGGCT
TTTACACACAACTATCGAGCGCACCCGTTTCAAGCACACGGTCGGTAATG
CGGAAGGCGGCTACCTGTGGTGAAGATGTTCCAATGACGCGCCATCCGCA
GTCTTTCACTGTCGAAGTCTTGGCTGATGATGTGCATGTGCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig79464:103..545+

>mRNA_Ecto-sp13_S_contig79464.19239.1 ID=mRNA_Ecto-sp13_S_contig79464.19239.1|Name=mRNA_Ecto-sp13_S_contig79464.19239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79464:103..545+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAACACGTTTGGAAGCTCTTCAAATGCCACATGTCCTACATATATT
AGCAAGAGGAGTCACACGAGGCTATAGATCAACAAATGACGGACGTAGTG
AGTTTTCGATCGCCCGCACGCTGCAGCGTTCGCGAGGTACATCAAGCGTG
ACAAGCGTACGATACCTCAACCGAATAATCCACTCTCTAGGGCAACTAGG
GAAGCCGCAGCCCTTCTCCCGCTCCCAAGCCCTGCGTGTTTCCTGGCGAT
CTCCGCCGGCTTTTACACACAACTATCGAGCGCACCCGTTTCAAGCACAC
GGTCGGTAA
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