prot_Ecto-sp13_S_contig7945.19236.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7945.19236.1
Unique Nameprot_Ecto-sp13_S_contig7945.19236.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length171
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7945.19236.1 vs. uniprot
Match: D7FJJ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJJ8_ECTSI)

HSP 1 Score: 293 bits (751), Expect = 1.260e-99
Identity = 159/170 (93.53%), Postives = 162/170 (95.29%), Query Frame = 0 
Query:    1 MDLPGAIRILEDDVSHVAKQRELAADMSKSIYYITPKYAVKDVERYSDGVHSSGSRGQSLASQLSAGMKRHLPPELTDRPAIGRTAAGGKLPGLKPLPAFDGKSLTALEDRERKSAEKGGAEKEKDKEDAGMLSDVEADVEEXXXXXXXAVDHYESGDXSGGDDEPAAVF 170
            MDLPG IRILEDDVSHVAKQRELAADMSKSIYYITPKYAVKDVERYSDGVHS G RGQSLASQLSAGMKRHLPPELTDRPAIG TAAGGKLPGLKPLPAFDGKSLTALED+ERKSAE GGAEKEKDKEDAGMLSDVEA+VEEXXXXX  AVDHYESG+ SGGDDEPAAVF
Sbjct:   15 MDLPGPIRILEDDVSHVAKQRELAADMSKSIYYITPKYAVKDVERYSDGVHSGGYRGQSLASQLSAGMKRHLPPELTDRPAIGTTAAGGKLPGLKPLPAFDGKSLTALEDKERKSAETGGAEKEKDKEDAGMLSDVEAEVEEXXXXXDYAVDHYESGNESGGDDEPAAVF 184
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7945.19236.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJJ8_ECTSI1.260e-9993.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024661DNA-directed RNA polymerase III, subunit Rpc31PFAMPF11705RNA_pol_3_Rpc31coord: 3..159
e-value: 8.2E-9
score: 36.0
IPR024661DNA-directed RNA polymerase III, subunit Rpc31PANTHERPTHR15367DNA-DIRECTED RNA POLYMERASE IIIcoord: 12..164

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7945contigEcto-sp13_S_contig7945:4695..5207 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7945.19236.1mRNA_Ecto-sp13_S_contig7945.19236.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7945 4695..5237 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7945.19236.1 ID=prot_Ecto-sp13_S_contig7945.19236.1|Name=mRNA_Ecto-sp13_S_contig7945.19236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp
MDLPGAIRILEDDVSHVAKQRELAADMSKSIYYITPKYAVKDVERYSDGV
HSSGSRGQSLASQLSAGMKRHLPPELTDRPAIGRTAAGGKLPGLKPLPAF
DGKSLTALEDRERKSAEKGGAEKEKDKEDAGMLSDVEADVEEEEQDDDYA
VDHYESGDDSGGDDEPAAVF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024661RNA_pol_III_Rpc31