mRNA_Ecto-sp13_S_contig7943.19235.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7943.19235.1
Unique NamemRNA_Ecto-sp13_S_contig7943.19235.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7943.19235.1 vs. uniprot
Match: A0A6H5JRR2_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRR2_9PHAE)

HSP 1 Score: 623 bits (1606), Expect = 3.630e-211
Identity = 446/583 (76.50%), Postives = 456/583 (78.22%), Query Frame = 1 
Query:    1 MMMIPGRDEDGGVAGGS-IGARKRPSPSQGGWFYTSSTPAVSEGVAAARLKRVTDGKSEMAGSNDHPAAAGGPWAAGAARGNPYARSGAXXXXXXXXXXXXXXXXXXEKSARRDSYRYAPTNGRHWETYRDQEDSYPLHPKGGGVGWYDSEESGLSRLTSCDSASSTWDEMHARPGAGRSG-DVFDRSRSRAMAAMEMASADAGGPGGGRDPRHPLRDRGGYPTHHPADGPEMMDVRPMAGGPGHRGTQTSAMFPAHLLRHDRFGRYSQGGGA-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPSRWRPVYNGGRDGPGGGPXXXXXXXXSHGDYG-----FDGWXXXXXXHLPGEGATAGKVGTAAAXXXXXXXXXXXXXEWEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGG-KFPQADDGQDGTSKTSEPQAAVGPTAQTDTAEPAEPPAESGVTAAENWAVAGGSRGDEKTGGVCRAASERLVGEGGGRDGGSKGEEXXXXXXXKTAAXXXXXXXTGGGFHFTVPKANASAGAVSVGNGVASLGMPMAATAV 1722
            MMMIPGRDEDGGVA GS IGARKRP PSQGGWFYTSSTPAVSEGVAAA LKRVTDGK+EMAG NDHPAAAG PWAAGAARG+PYARSGAXXXXXXXXXXXXXXXX  EKSARRD YRYAPTNGRHW+TYRDQEDSYPLHPKGG VGWYDSEESGLSRLTSCDSASSTWDEMHARPGAG  G DVFDRSRSRAMAAMEMA ADAGG   GRDP  PLRDRGGYP+HHPADGPEMMDVRPMAGGPGHRGTQTSAMFPAHLLRHDRFGRY QGGGA    XXXXXX                         GAPSRWRPVYNGGR GP GGP XXXXXXX           FDGW       LPGEGA AGKVGTA+A X           EWE           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +FP A+DGQD   KTSEPQAAVG  A TDTA P EPP+ES VTAAEN A    S GDEKTGGVCRAA E LVGEGGGRDGGSKGEE       +    XXXXXX GGGFHFTVPK+NASAGAVSVGNGVASLGMPMAATAV
Sbjct:  263 MMMIPGRDEDGGVADGSPIGARKRPPPSQGGWFYTSSTPAVSEGVAAAHLKRVTDGKAEMAGGNDHPAAAGDPWAAGAARGSPYARSGAXXXXXXXXXXXXXXXX--EKSARRDLYRYAPTNGRHWDTYRDQEDSYPLHPKGGWVGWYDSEESGLSRLTSCDSASSTWDEMHARPGAGGGGGDVFDRSRSRAMAAMEMAPADAGG---GRDPHDPLRDRGGYPSHHPADGPEMMDVRPMAGGPGHRGTQTSAMFPAHLLRHDRFGRYPQGGGAEGAGXXXXXXVYDYPAPPPPMYAMPSQAYVPDPDPGAPSRWRPVYNGGRGGPDGGPGXXXXXXXXXXXXXXXXXXFDGWRDGPAGRLPGEGAAAGKVGTASAAXAPCAATVAPAAEWEEPPTFEEMAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEFPHANDGQDEAWKTSEPQAAVGRAAPTDTAGPGEPPSESSVTAAENGAXXXXSGGDEKTGGVCRAAFEELVGEGGGRDGGSKGEEE------RXXTAXXXXXXXGGGFHFTVPKSNASAGAVSVGNGVASLGMPMAATAV 834
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7943.19235.1 vs. uniprot
Match: D8LLB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLB3_ECTSI)

HSP 1 Score: 327 bits (838), Expect = 9.930e-104
Identity = 183/229 (79.91%), Postives = 187/229 (81.66%), Query Frame = 1 
Query:    1 MMMIPGRDEDGGVA-GGSIGARKRPSPSQGGWFYTSSTPAVSEGVAAARLKRVTDGKSEMAGSNDHPAAAGGPWAAGAARGNPYARSGAXXXXXXXXXXXXXXXXXXEKSARRDSYRYAPTNGRHWETYRDQEDSYPLHPKGGGVGWYDSEESGLSRLTSCDSASSTWDEMHARPGAGRSGDVFDRSRSRAMAAMEMASADAGGPG---GGRDPRHPLRDRGGYPTHHP 675
            MMMIPGRD DGGVA G SIGARKRPSPSQGGWFYTSSTPAVSEGVAAAR+KR T GK+EMAG NDHPAAAG PWAAGAARGNPYARSGA  XXXXXXX         EKSA RDSYRYAPTNGRHWETYRDQEDSYP+HPK GGVGWYDSEESGLSRLTSCDSASSTWDEMHARPGAG  GDVF+RS             DAGG G   GGRDPR PLRDRGGY  HHP
Sbjct:    1 MMMIPGRDADGGVADGSSIGARKRPSPSQGGWFYTSSTPAVSEGVAAARIKRATGGKAEMAGGNDHPAAAGDPWAAGAARGNPYARSGAGAXXXXXXXPCSAGGPP-EKSAHRDSYRYAPTNGRHWETYRDQEDSYPMHPKVGGVGWYDSEESGLSRLTSCDSASSTWDEMHARPGAGGGGDVFNRSXXXXXXXXXXXXXDAGGAGACAGGRDPRDPLRDRGGYSLHHP 228
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7943.19235.1 vs. uniprot
Match: D8LLB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLB4_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.460e-19
Identity = 83/141 (58.87%), Postives = 89/141 (63.12%), Query Frame = 1 
Query: 1300 KFPQADDGQDGTSKTSEPQAAVGPTAQTDTAEPAEPPAESGVTAAENWAVAGGSRGDEKTGGVCRAASERLVGEGGGRDGGSKGEEXXXXXXXKTAAXXXXXXXTGGGFHFTVPKANASAGAVSVGNGVASLGMPMAATAV 1722
            + P ADDGQDG SKTS+PQ AVGP A T+TAEPAEPPAES VT+ EN A                                     XXXXXXX    XXXXXX TGGGFHFTVPK+NASAG VSVGNGVASLG+PMAATAV
Sbjct:   81 RSPHADDGQDGASKTSKPQEAVGPAALTETAEPAEPPAESSVTSGENGAXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXVTGGGFHFTVPKSNASAGGVSVGNGVASLGLPMAATAV 216
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7943.19235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JRR2_9PHAE3.630e-21176.50HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
D8LLB3_ECTSI9.930e-10479.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLB4_ECTSI1.460e-1958.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7943contigEcto-sp13_S_contig7943:3054..5163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2110
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_001980.1
Cds size1725
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464065.9359758-CDS-Ecto-sp13_S_contig7943:3053..47781681464065.9359758-CDS-Ecto-sp13_S_contig7943:3053..4778Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7943 3054..4778 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464065.9485111-UTR-Ecto-sp13_S_contig7943:4778..51631681464065.9485111-UTR-Ecto-sp13_S_contig7943:4778..5163Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7943 4779..5163 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7943.19235.1prot_Ecto-sp13_S_contig7943.19235.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7943 3054..4778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7943.19235.1

>prot_Ecto-sp13_S_contig7943.19235.1 ID=prot_Ecto-sp13_S_contig7943.19235.1|Name=mRNA_Ecto-sp13_S_contig7943.19235.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=575bp
MMMIPGRDEDGGVAGGSIGARKRPSPSQGGWFYTSSTPAVSEGVAAARLK
RVTDGKSEMAGSNDHPAAAGGPWAAGAARGNPYARSGAAAAAAAAAAAAS
AAGGPPEKSARRDSYRYAPTNGRHWETYRDQEDSYPLHPKGGGVGWYDSE
ESGLSRLTSCDSASSTWDEMHARPGAGRSGDVFDRSRSRAMAAMEMASAD
AGGPGGGRDPRHPLRDRGGYPTHHPADGPEMMDVRPMAGGPGHRGTQTSA
MFPAHLLRHDRFGRYSQGGGAAGAGGGGGGVYDYPAPPPPMYAMPSHAYA
PDPDPGAPSRWRPVYNGGRDGPGGGPGGGGPGGGSHGDYGFDGWRDGPAG
HLPGEGATAGKVGTAAAAAAPSAAIAAPVAEWEEPPTFEEMAAVEAEEKQ
ATAAATGAGAVAGGADQAVAKDKKVAAAAAAGGKFPQADDGQDGTSKTSE
PQAAVGPTAQTDTAEPAEPPAESGVTAAENWAVAGGSRGDEKTGGVCRAA
SERLVGEGGGRDGGSKGEEEGEEEREKTAAAPAPAPVTGGGFHFTVPKAN
ASAGAVSVGNGVASLGMPMAATAV*
back to top

mRNA from alignment at Ecto-sp13_S_contig7943:3054..5163+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7943.19235.1 ID=mRNA_Ecto-sp13_S_contig7943.19235.1|Name=mRNA_Ecto-sp13_S_contig7943.19235.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2110bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7943:3054..5163+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGATGATACCGGGGAGAGACGAGGACGGGGGGGTCGCGGGCGGGTC
TATTGGTGCCCGCAAGAGGCCCTCCCCCTCCCAGGGGGGATGGTTCTACA
CGTCCTCTACCCCCGCCGTGTCCGAGGGCGTCGCTGCCGCTCGCCTCAAG
CGGGTCACGGATGGGAAGTCAGAGATGGCCGGCAGCAACGATCACCCCGC
CGCCGCCGGGGGCCCGTGGGCGGCGGGAGCCGCCCGGGGCAACCCGTACG
CCAGGAGCGGTGCCGCAGCGGCGGCGGCGGCGGCGGCGGCGGCAGCCTCC
GCCGCAGGCGGACCTCCCGAAAAGTCCGCTCGCCGCGATTCGTACCGCTA
CGCACCCACCAACGGGCGGCACTGGGAGACGTACCGAGACCAGGAGGACT
CGTACCCGCTGCACCCGAAGGGAGGGGGGGTCGGGTGGTACGATTCGGAA
GAGTCTGGCCTGTCGAGGCTGACGTCGTGCGACAGCGCGTCCTCGACGTG
GGACGAGATGCACGCGCGTCCCGGAGCGGGAAGGAGTGGGGACGTGTTCG
ACCGCAGCAGGTCGAGAGCGATGGCGGCGATGGAGATGGCCTCCGCAGAC
GCCGGTGGCCCCGGCGGCGGGAGGGACCCCCGTCACCCGCTACGCGACCG
GGGCGGGTACCCGACCCACCACCCGGCGGACGGCCCCGAGATGATGGACG
TGAGGCCCATGGCGGGCGGGCCCGGCCACCGCGGCACCCAGACCTCGGCC
ATGTTCCCCGCCCACCTTCTGCGCCACGATAGGTTCGGTAGGTATTCTCA
GGGAGGAGGAGCAGCAGGTGCAGGAGGAGGAGGAGGAGGGGTCTACGACT
ACCCGGCTCCGCCGCCTCCGATGTACGCCATGCCTTCACACGCATACGCG
CCGGACCCTGACCCCGGCGCCCCGAGCAGGTGGCGGCCGGTGTACAACGG
GGGCCGCGATGGCCCCGGCGGTGGTCCCGGCGGCGGTGGCCCCGGCGGCG
GTAGCCACGGTGACTACGGCTTCGACGGCTGGAGGGACGGTCCGGCCGGG
CACCTTCCCGGCGAGGGCGCCACCGCTGGCAAGGTAGGAACCGCTGCCGC
CGCCGCCGCACCCTCTGCAGCCATCGCAGCCCCTGTCGCTGAGTGGGAAG
AGCCACCCACGTTCGAAGAGATGGCAGCAGTGGAGGCCGAGGAGAAGCAG
GCCACAGCCGCTGCCACCGGTGCCGGCGCCGTCGCCGGCGGTGCGGATCA
GGCTGTCGCGAAGGACAAGAAGGTCGCCGCTGCCGCTGCCGCTGGCGGTA
AGTTTCCACAAGCTGACGACGGTCAGGACGGGACATCGAAAACTAGCGAG
CCGCAGGCGGCGGTGGGGCCTACTGCGCAGACCGACACGGCCGAGCCCGC
CGAGCCGCCGGCGGAATCGGGCGTGACGGCTGCTGAGAACTGGGCGGTGG
CTGGCGGGAGCAGGGGTGACGAGAAGACGGGAGGTGTGTGCCGGGCCGCA
TCCGAAAGGCTTGTTGGCGAGGGCGGCGGGCGGGACGGCGGTAGCAAGGG
GGAGGAGGAGGGGGAGGAGGAGCGCGAAAAGACGGCAGCGGCGCCGGCGC
CGGCGCCGGTGACCGGCGGAGGGTTTCATTTCACCGTTCCGAAAGCCAAC
GCTTCGGCCGGCGCGGTCAGCGTCGGGAACGGGGTAGCCTCGCTCGGGAT
GCCAATGGCAGCGACGGCTGTGTAAGTGGCTACTTGCCGGGTCTGGTGGG
GTGGGGTTATGAGTGACTGGATGGAAAACAACAACGGGCCGAGACCAAGG
TCTTGGTACGGTTTAATTTAGCTCGTGCGTTCAGTGTGTCTTGGGTGTTT
ACTGCTGTGTGTATGTTAAAGCGTGCTGTATGTGTTTGGAGTGTTTGGGT
GTCTGCATGTTGGCGTGCGGCGGTGTTCTGTGTGCGTGCGTGCGTTCGTT
ACCAGAGTTCCTCCGTTGCCCACGAAGCACGGCGAGCGATCTTTCCAGAC
CGGGCAGATACTTGACTAGTGCTTGCCCTGGGGTCAGGGATCGCTGTTGC
GTACGCTCTTGTAAAGAGTTTTTTGGATTGATTTCCAGCGTCGGGGCGGT
TCGGCCAGGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7943:3054..5163+

>mRNA_Ecto-sp13_S_contig7943.19235.1 ID=mRNA_Ecto-sp13_S_contig7943.19235.1|Name=mRNA_Ecto-sp13_S_contig7943.19235.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1725bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7943:3054..5163+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGATGATACCGGGGAGAGACGAGGACGGGGGGGTCGCGGGCGGGTC
TATTGGTGCCCGCAAGAGGCCCTCCCCCTCCCAGGGGGGATGGTTCTACA
CGTCCTCTACCCCCGCCGTGTCCGAGGGCGTCGCTGCCGCTCGCCTCAAG
CGGGTCACGGATGGGAAGTCAGAGATGGCCGGCAGCAACGATCACCCCGC
CGCCGCCGGGGGCCCGTGGGCGGCGGGAGCCGCCCGGGGCAACCCGTACG
CCAGGAGCGGTGCCGCAGCGGCGGCGGCGGCGGCGGCGGCGGCAGCCTCC
GCCGCAGGCGGACCTCCCGAAAAGTCCGCTCGCCGCGATTCGTACCGCTA
CGCACCCACCAACGGGCGGCACTGGGAGACGTACCGAGACCAGGAGGACT
CGTACCCGCTGCACCCGAAGGGAGGGGGGGTCGGGTGGTACGATTCGGAA
GAGTCTGGCCTGTCGAGGCTGACGTCGTGCGACAGCGCGTCCTCGACGTG
GGACGAGATGCACGCGCGTCCCGGAGCGGGAAGGAGTGGGGACGTGTTCG
ACCGCAGCAGGTCGAGAGCGATGGCGGCGATGGAGATGGCCTCCGCAGAC
GCCGGTGGCCCCGGCGGCGGGAGGGACCCCCGTCACCCGCTACGCGACCG
GGGCGGGTACCCGACCCACCACCCGGCGGACGGCCCCGAGATGATGGACG
TGAGGCCCATGGCGGGCGGGCCCGGCCACCGCGGCACCCAGACCTCGGCC
ATGTTCCCCGCCCACCTTCTGCGCCACGATAGGTTCGGTAGGTATTCTCA
GGGAGGAGGAGCAGCAGGTGCAGGAGGAGGAGGAGGAGGGGTCTACGACT
ACCCGGCTCCGCCGCCTCCGATGTACGCCATGCCTTCACACGCATACGCG
CCGGACCCTGACCCCGGCGCCCCGAGCAGGTGGCGGCCGGTGTACAACGG
GGGCCGCGATGGCCCCGGCGGTGGTCCCGGCGGCGGTGGCCCCGGCGGCG
GTAGCCACGGTGACTACGGCTTCGACGGCTGGAGGGACGGTCCGGCCGGG
CACCTTCCCGGCGAGGGCGCCACCGCTGGCAAGGTAGGAACCGCTGCCGC
CGCCGCCGCACCCTCTGCAGCCATCGCAGCCCCTGTCGCTGAGTGGGAAG
AGCCACCCACGTTCGAAGAGATGGCAGCAGTGGAGGCCGAGGAGAAGCAG
GCCACAGCCGCTGCCACCGGTGCCGGCGCCGTCGCCGGCGGTGCGGATCA
GGCTGTCGCGAAGGACAAGAAGGTCGCCGCTGCCGCTGCCGCTGGCGGTA
AGTTTCCACAAGCTGACGACGGTCAGGACGGGACATCGAAAACTAGCGAG
CCGCAGGCGGCGGTGGGGCCTACTGCGCAGACCGACACGGCCGAGCCCGC
CGAGCCGCCGGCGGAATCGGGCGTGACGGCTGCTGAGAACTGGGCGGTGG
CTGGCGGGAGCAGGGGTGACGAGAAGACGGGAGGTGTGTGCCGGGCCGCA
TCCGAAAGGCTTGTTGGCGAGGGCGGCGGGCGGGACGGCGGTAGCAAGGG
GGAGGAGGAGGGGGAGGAGGAGCGCGAAAAGACGGCAGCGGCGCCGGCGC
CGGCGCCGGTGACCGGCGGAGGGTTTCATTTCACCGTTCCGAAAGCCAAC
GCTTCGGCCGGCGCGGTCAGCGTCGGGAACGGGGTAGCCTCGCTCGGGAT
GCCAATGGCAGCGACGGCTGTGTAA
back to top