mRNA_Ecto-sp13_S_contig79402.19232.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig79402.19232.1
Unique NamemRNA_Ecto-sp13_S_contig79402.19232.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig79402.19232.1 vs. uniprot
Match: A0A6H5KFP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP4_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 1.030e-54
Identity = 155/173 (89.60%), Postives = 160/173 (92.49%), Query Frame = 1 
Query:   79 TSASYGVMGKKRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTNKXXXXXXXXXXXXXXXNNQTRGSVQRKMASATSRNAVPHDDIEEESDEKPAVRGDGRRASDPPVLGEEEEGGVGASLAGSDEENGPVSMAADEHSNSWSDPRLPVAATRDGGVWDLRGPGGVGSS 597
            TSASYGVMGK   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTNKXXXXXXXXXXXXXXXNNQ +GS+QRK ASATS NA PHDDIEEESDEKPAVRGDGRRASD  VLG+EEEGGVGAS AGS EE GPVSMAADEH+NSWS+PRLPVAATRDGGVWDLRGP GVGSS
Sbjct:  128 TSASYGVMGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTNKXXXXXXXXXXXXXXXNNQKKGSIQRKKASATSNNAGPHDDIEEESDEKPAVRGDGRRASDASVLGKEEEGGVGASFAGSAEEKGPVSMAADEHNNSWSEPRLPVAATRDGGVWDLRGPRGVGSS 300
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BLAST of mRNA_Ecto-sp13_S_contig79402.19232.1 vs. uniprot
Match: D7FWU8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU8_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.550e-24
Identity = 119/147 (80.95%), Postives = 120/147 (81.63%), Query Frame = 1 
Query:   76 FTSASYGVMGKKRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTNKXXXXXXXXXXXXXXXNNQTRGSVQRKMASATSRNAVPHDDIEEESDEKPAVRGDGRRASDPPVLGEEEEGGVGASLAGSDEENGPVSMAADEHSNSW 516
            FTSASYGVMGK   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTNKXXXXXXXXXXXXXXXNNQ RGSVQRK  SA      PHDD+EEESDEKPAVRGDGRRASDP VLGEEE GGVG S A S EENGP    A    N W
Sbjct:  176 FTSASYGVMGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTNKXXXXXXXXXXXXXXXNNQKRGSVQRKKPSAG-----PHDDVEEESDEKPAVRGDGRRASDPSVLGEEEGGGVGTSFARSAEENGPTGGRAGS-GNRW 316
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig79402.19232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFP4_9PHAE1.030e-5489.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWU8_ECTSI1.550e-2480.95EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig79402contigEcto-sp13_S_contig79402:1..606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size606
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-13_001100.2
Cds size606
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464065.725336-CDS-Ecto-sp13_S_contig79402:0..6061681464065.725336-CDS-Ecto-sp13_S_contig79402:0..606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig79402 1..606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig79402.19232.1prot_Ecto-sp13_S_contig79402.19232.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig79402 1..606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig79402.19232.1

>prot_Ecto-sp13_S_contig79402.19232.1 ID=prot_Ecto-sp13_S_contig79402.19232.1|Name=mRNA_Ecto-sp13_S_contig79402.19232.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=202bp
RRFCSKHAEDDMVKLDKKLCPVKGCFTSASYGVMGKKRKFCAVHAERGMV
SIGGRRCAKEDCGKRANYGVAGTNKREFCATHAEAGMVNINNQTRGSVQR
KMASATSRNAVPHDDIEEESDEKPAVRGDGRRASDPPVLGEEEEGGVGAS
LAGSDEENGPVSMAADEHSNSWSDPRLPVAATRDGGVWDLRGPGGVGSSS
GG
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mRNA from alignment at Ecto-sp13_S_contig79402:1..606+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig79402.19232.1 ID=mRNA_Ecto-sp13_S_contig79402.19232.1|Name=mRNA_Ecto-sp13_S_contig79402.19232.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79402:1..606+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGAGGTTCTGCAGCAAACATGCGGAGGACGACATGGTCAAGTTGGACAA
AAAGCTTTGTCCGGTCAAGGGCTGCTTTACGTCGGCGTCCTACGGGGTCA
TGGGGAAGAAGAGAAAGTTCTGTGCCGTGCACGCTGAGCGAGGCATGGTG
TCCATAGGGGGAAGGCGGTGCGCGAAAGAAGACTGCGGCAAGCGCGCGAA
CTACGGCGTCGCCGGGACCAACAAACGGGAGTTCTGCGCCACTCACGCGG
AGGCCGGGATGGTGAACATCAACAACCAAACGAGAGGCTCGGTTCAGAGA
AAAATGGCCAGCGCCACCAGCCGCAACGCCGTGCCACACGATGATATCGA
AGAGGAAAGCGACGAGAAGCCGGCCGTGCGCGGCGACGGTCGACGAGCCA
GTGATCCTCCCGTCTTGGGCGAAGAAGAAGAAGGGGGAGTGGGAGCAAGT
CTCGCTGGTAGCGACGAGGAGAATGGACCGGTGAGCATGGCAGCAGACGA
ACACAGCAATTCCTGGAGTGACCCCCGCTTGCCGGTAGCGGCGACTCGAG
ACGGGGGAGTGTGGGACTTGAGAGGACCCGGTGGTGTCGGTAGCAGCAGC
GGAGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig79402:1..606+

>mRNA_Ecto-sp13_S_contig79402.19232.1 ID=mRNA_Ecto-sp13_S_contig79402.19232.1|Name=mRNA_Ecto-sp13_S_contig79402.19232.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79402:1..606+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGAGGTTCTGCAGCAAACATGCGGAGGACGACATGGTCAAGTTGGACAA
AAAGCTTTGTCCGGTCAAGGGCTGCTTTACGTCGGCGTCCTACGGGGTCA
TGGGGAAGAAGAGAAAGTTCTGTGCCGTGCACGCTGAGCGAGGCATGGTG
TCCATAGGGGGAAGGCGGTGCGCGAAAGAAGACTGCGGCAAGCGCGCGAA
CTACGGCGTCGCCGGGACCAACAAACGGGAGTTCTGCGCCACTCACGCGG
AGGCCGGGATGGTGAACATCAACAACCAAACGAGAGGCTCGGTTCAGAGA
AAAATGGCCAGCGCCACCAGCCGCAACGCCGTGCCACACGATGATATCGA
AGAGGAAAGCGACGAGAAGCCGGCCGTGCGCGGCGACGGTCGACGAGCCA
GTGATCCTCCCGTCTTGGGCGAAGAAGAAGAAGGGGGAGTGGGAGCAAGT
CTCGCTGGTAGCGACGAGGAGAATGGACCGGTGAGCATGGCAGCAGACGA
ACACAGCAATTCCTGGAGTGACCCCCGCTTGCCGGTAGCGGCGACTCGAG
ACGGGGGAGTGTGGGACTTGAGAGGACCCGGTGGTGTCGGTAGCAGCAGC
GGAGGC
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