mRNA_Ecto-sp13_S_contig794.19230.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Match: D7FS22_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS22_ECTSI) HSP 1 Score: 231 bits (589), Expect = 7.230e-63 Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 1
Query: 1 QVWVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVRKIEAPFTPTGELSNMLVSCLGRLLDIEARNPYN 345
QVWVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKKKEAVEVVIDRWLRFRMTE+TAVAFKAMRRELSNLLVRKIEAPF PTGELSNMLVSCLGRLLDIEARNPYN
Sbjct: 1289 QVWVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKKKEAVEVVIDRWLRFRMTENTAVAFKAMRRELSNLLVRKIEAPFMPTGELSNMLVSCLGRLLDIEARNPYN 1403
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Match: A0A835Z4K1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4K1_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 5.280e-18 Identity = 51/116 (43.97%), Postives = 76/116 (65.52%), Query Frame = 1
Query: 7 WVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHK-----KKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVRKIE---APFTPTGELSNMLVSCLGRLLDIEA 330
+V+YHS++KT+QVYLH++T T FSL+LWG+ +RH R KK A+ V +D WLRF+ TES V FK +R++++ LL+ +IE A T + + +L + RLLD+EA
Sbjct: 900 YVLYHSRVKTRQVYLHETTCCTAFSLLLWGSHIRHLRHTEDTGGPTLKKRALIVAVDEWLRFKTTESIGVVFKHLRKDINELLLSRIESARAAHTDGAKFAGVLADVVVRLLDMEA 1015
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Match: A0A7S3XX33_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX33_HETAK) HSP 1 Score: 76.3 bits (186), Expect = 1.830e-11 Identity = 40/109 (36.70%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 7 WVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGH--KKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVRKIEAPFTPTGELSNMLVSCLGRLLDIE 327
WV+YHSK+++ +VYLHDST+ + FSL+L+G V + G ++ A+ + +D W+ F+M + AV K R E+ LL+ KIE P + N + + + +LL+ E
Sbjct: 248 WVLYHSKVQSSRVYLHDSTFISAFSLLLFGGDVTASQDKGTTGSRRNAL-LSVDEWVSFKMPKEAAVLCKVFRLEIDRLLLTKIEDPSANCWQRGNAITAVVRKLLESE 355
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Match: W7T633_9STRA (Putative atp-dependent rna helicase dhx36 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T633_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 4.150e-9 Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query: 13 VYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVRKIEAPFTPTGELSNMLVSCLGRLLDIEA 330
VYH KM+T + YLHD ++ +P S++L+G+ +R R G + V + +D WL F+ E T+V ++ L L +KI P + +V L R+L +EA
Sbjct: 1159 VYHRKMRTSRTYLHDISFVSPLSVLLFGSNIRTRREHGGIASKVVNITVDDWLSFKTKEETSVLVTVFKKHLDACLTQKITQPDSNFISRFQPVVRTLRRVLWLEA 1264
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Match: W7TVU1_9STRA (Atp-dependent rna helicase dhx57 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVU1_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 1.670e-8 Identity = 31/86 (36.05%), Postives = 58/86 (67.44%), Query Frame = 1
Query: 7 WVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKK-KEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVRKIEAP 261
+++YH K+++ ++Y +DST+ +PF+++L+G ++ + G + +++ V +D WL FRMT S+AV K +R EL+ LL+ K P
Sbjct: 1125 FLLYHKKVQSTKIYAYDSTFVSPFTILLFGGDIKIQWEHGSLEGDQSIAVTMDNWLSFRMTASSAVLVKYIRHELNQLLLEKFSDP 1210
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Match: A7SF08_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SF08_NEMVE) HSP 1 Score: 65.9 bits (159), Expect = 1.010e-7 Identity = 31/85 (36.47%), Postives = 49/85 (57.65%), Query Frame = 1
Query: 7 WVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVRKIEAP 261
W++YH K+K+ +V++HDST PF L+ +G + GH + + +D +++FR + A K +RREL LL RKI P
Sbjct: 670 WLIYHQKIKSSKVFIHDSTVIAPFPLLFFGGSISMHVEQGHGQGHET-IAVDNFIKFRSPKRIANLVKDLRRELDTLLERKISQP 753
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Match: A0A7S2ID12_9EUKA (Hypothetical protein n=2 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2ID12_9EUKA) HSP 1 Score: 64.3 bits (155), Expect = 1.080e-7 Identity = 34/91 (37.36%), Postives = 52/91 (57.14%), Query Frame = 1
Query: 7 WVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVRKIEAPFTPTGE 279
W+VYH K+ T ++Y+HD T T L L+GA E + H + V++D W+ R++ TAV FKA+RR+L L+ +IE G+
Sbjct: 156 WLVYHEKVATGKIYVHDVTAVTSLDLFLFGA----EPQVLHAQHR---VIVDNWIEMRISPRTAVLFKALRRQLFVLMAERIEVEARTRGD 239
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Match: UPI001390545E (ATP-dependent DNA/RNA helicase DHX36 isoform X1 n=2 Tax=Nematostella vectensis TaxID=45351 RepID=UPI001390545E) HSP 1 Score: 65.9 bits (159), Expect = 1.140e-7 Identity = 31/85 (36.47%), Postives = 49/85 (57.65%), Query Frame = 1
Query: 7 WVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVRKIEAP 261
W++YH K+K+ +V++HDST PF L+ +G + GH + + +D +++FR + A K +RREL LL RKI P
Sbjct: 978 WLIYHQKIKSSKVFIHDSTVIAPFPLLFFGGSISMHVEQGHGQGHET-IAVDNFIKFRSPKRIANLVKDLRRELDTLLERKISQP 1061
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Match: T1IZC6_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IZC6_STRMM) HSP 1 Score: 64.3 bits (155), Expect = 3.330e-7 Identity = 37/109 (33.94%), Postives = 58/109 (53.21%), Query Frame = 1
Query: 7 WVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRH---ERPLGHKKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVRKIEAPFTPTGELSNMLVSCLGRLLDI 324
W+VYH +MK+ VY+HDS+ +P+ L+L+G ++R +R G V ID W++F E A +R EL LL KI P +L+N + L ++D+
Sbjct: 829 WIVYHQRMKSTCVYIHDSSMVSPYPLLLFGGKLRCGAIDRKYG--------VTIDGWIKFWCPEERADLIMRLRNELDKLLEHKILHPAPTMWDLNNKEGNLLHTIIDL 929
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Match: UPI000180C9D3 (ATP-dependent RNA helicase DHX36 n=1 Tax=Ciona intestinalis TaxID=7719 RepID=UPI000180C9D3) HSP 1 Score: 63.5 bits (153), Expect = 5.830e-7 Identity = 34/106 (32.08%), Postives = 58/106 (54.72%), Query Frame = 1
Query: 7 WVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVRKIEAPFTPTGELSNMLVSCLGRLLDI 324
W+ Y+ KMKT +VYL+D++ +P+ L+ +G + + K + +D W+ FR A K +R+EL N+L RKI PF+ LS+ S + ++D+
Sbjct: 879 WLCYYEKMKTAEVYLYDTSEVSPYPLLFFGGDISTFQDEDGVNK----ISVDGWIDFRSESKVAETVKKLRKELDNILERKIREPFSTLLHLSSS-ASVIKSIIDL 979 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig794.19230.1 >prot_Ecto-sp13_S_contig794.19230.1 ID=prot_Ecto-sp13_S_contig794.19230.1|Name=mRNA_Ecto-sp13_S_contig794.19230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp MKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKKKEAVEVVIDRWLRFback to top mRNA from alignment at Ecto-sp13_S_contig794:18681..20549- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig794.19230.1 ID=mRNA_Ecto-sp13_S_contig794.19230.1|Name=mRNA_Ecto-sp13_S_contig794.19230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1869bp|location=Sequence derived from alignment at Ecto-sp13_S_contig794:18681..20549- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig794:18681..20549- >mRNA_Ecto-sp13_S_contig794.19230.1 ID=mRNA_Ecto-sp13_S_contig794.19230.1|Name=mRNA_Ecto-sp13_S_contig794.19230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig794:18681..20549- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |