mRNA_Ecto-sp13_S_contig79396.19227.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig79396.19227.1
Unique Name	mRNA_Ecto-sp13_S_contig79396.19227.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig79396.19227.1 vs. uniprot
Match: D8LNP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNP0_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 1.080e-67
Identity = 103/108 (95.37%), Postives = 108/108 (100.00%), Query Frame = 1

Query:    1 VLLFLAISAGLAAIAVPFWGVTVLSGTGFWELGENKRDHQFVMISTFMVEFLVGICMFVVVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVV 324
            VLLFLA+SAGLAAIAVPFWG+TVLSGTGFWELGENKRDH+FVMISTFMVEFLVGICMFV+VSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYV+
Sbjct:   62 VLLFLALSAGLAAIAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGICMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVI 169

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BLAST of mRNA_Ecto-sp13_S_contig79396.19227.1 vs. uniprot
Match: D8LNM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM5_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 2.900e-38
Identity = 66/104 (63.46%), Postives = 79/104 (75.96%), Query Frame = 1

Query:   13 LAISAGLAAIAVPFWGVTVLSGTGFWELGENKRDHQFVMISTFMVEFLVGICMFVVVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVV 324
            L IS G AA A PFW   +LSGTGF+   EN+R   ++ IS F +EF VGICMFV+V+WLLLFRMTEIKECW MHA +RYYFGLTL+ T  NL LG+CG IY++
Sbjct:   71 LVISIGAAAAAAPFWEFIILSGTGFFPETENQRGSDWITISRFYLEFFVGICMFVIVAWLLLFRMTEIKECWKMHARIRYYFGLTLIATGVNLILGICGVIYLI 174

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BLAST of mRNA_Ecto-sp13_S_contig79396.19227.1 vs. uniprot
Match: D8LNN1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN1_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.570e-37
Identity = 67/108 (62.04%), Postives = 83/108 (76.85%), Query Frame = 1

Query:    1 VLLFLAISAGLAAIAVPFWGVTVLSGTGFWELGENKRDHQFVMISTFMVEFLVGICMFVVVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVV 324
            V L LA+S  +A  A PFW  TV+SGTGF    E++R   ++ +S F +EFLVGICMFV+V+WLLLFR+ E+KECW +HA +RYYFGLTL+GT  NL LGVCGTIYVV
Sbjct:   62 VFLSLAVSIAVAVAAAPFWQTTVVSGTGFAVRNEDQRSGDWLAVSRFFLEFLVGICMFVIVAWLLLFRINEVKECWKVHARIRYYFGLTLIGTTVNLALGVCGTIYVV 169

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BLAST of mRNA_Ecto-sp13_S_contig79396.19227.1 vs. uniprot
Match: A0A6H5JZY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZY2_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 9.310e-37
Identity = 64/108 (59.26%), Postives = 81/108 (75.00%), Query Frame = 1

Query:    1 VLLFLAISAGLAAIAVPFWGVTVLSGTGFWELGENKRDHQFVMISTFMVEFLVGICMFVVVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVV 324
            +++ L IS G AA A PFW   +LSGTGF+   EN+R   ++ +S F +EF VGICMFV+V+WLLLFRMTEIKECW  HA +RYYFGLTL+ T  NL LG+CG IY++
Sbjct:  130 IMVSLVISIGAAAAAAPFWDFIILSGTGFFPETENQRGSDWITVSRFYLEFFVGICMFVIVAWLLLFRMTEIKECWKTHARIRYYFGLTLIATGVNLILGICGVIYLI 237

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BLAST of mRNA_Ecto-sp13_S_contig79396.19227.1 vs. uniprot
Match: D8LNM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM4_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 7.850e-36
Identity = 63/108 (58.33%), Postives = 82/108 (75.93%), Query Frame = 1

Query:    1 VLLFLAISAGLAAIAVPFWGVTVLSGTGFWELGENKRDHQFVMISTFMVEFLVGICMFVVVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVV 324
            +L+FLA+S G+AAI+VPFW   V+SGT FW     +  H +++++ F VEF VGICM V+V WL++FR TEIK+ W MHA +RYYFGLTL+ T  NL LG+CGTIYVV
Sbjct:  160 ILVFLALSLGVAAISVPFWTEMVVSGTAFWVQTHEQAAHDWIVVAGFFVEFFVGICMLVIVVWLVIFRRTEIKQSWKMHARIRYYFGLTLIATGVNLALGICGTIYVV 267

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BLAST of mRNA_Ecto-sp13_S_contig79396.19227.1 vs. uniprot
Match: D8LNN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN2_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 6.210e-34
Identity = 61/107 (57.01%), Postives = 78/107 (72.90%), Query Frame = 1

Query:    1 VLLFLAISAGLAAIAVPFWGVTVLSGTGFWELGENKRDHQFVMISTFMVEFLVGICMFVVVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYV 321
            VLLFLAIS   AA +VPFW +TV+SGT FW    +K    ++++S  ++EF+VGICMFV+VSWL+ FRM  IKECW +HA +RYYF LTL+ T  NL LG+ G  YV
Sbjct:   62 VLLFLAISVIAAAASVPFWSITVVSGTAFWVTNADKAKADWIIVSIIILEFVVGICMFVIVSWLMAFRMQAIKECWKIHARIRYYFVLTLIATAVNLALGISGLSYV 168

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BLAST of mRNA_Ecto-sp13_S_contig79396.19227.1 vs. uniprot
Match: A0A6H5K8K6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K6_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 3.310e-33
Identity = 60/107 (56.07%), Postives = 79/107 (73.83%), Query Frame = 1

Query:    1 VLLFLAISAGLAAIAVPFWGVTVLSGTGFWELGENKRDHQFVMISTFMVEFLVGICMFVVVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYV 321
            VLLFLAIS   AA +VPFW +TV+SGT FW    +K    ++++S  ++EF+VGICMF++VSWL+ FRM  IKECW +HA +RYYF LT++GT  NL LG+ G  YV
Sbjct:   69 VLLFLAISVVAAAASVPFWSITVVSGTAFWVTNADKAKADWIIVSIIILEFVVGICMFIIVSWLMAFRMRAIKECWKLHARIRYYFVLTVIGTAVNLALGISGFSYV 175

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BLAST of mRNA_Ecto-sp13_S_contig79396.19227.1 vs. uniprot
Match: D7FTK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK5_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 2.700e-31
Identity = 54/106 (50.94%), Postives = 78/106 (73.58%), Query Frame = 1

Query:    7 LFLAISAGLAAIAVPFWGVTVLSGTGFWELGENKRDHQFVMISTFMVEFLVGICMFVVVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVV 324
            L LAIS G+ ++ VP W    + GTGFW +  ++  +  V++S F +EF+VGICMFV+++WLLLFRM E+KECW + A +RYYF LTLLGT  N+ +G+C T++V+
Sbjct:  136 LLLAISIGITSVTVPLWETVYVIGTGFWIVNSDQGSYDAVVVSIFFLEFMVGICMFVILAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVI 241

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BLAST of mRNA_Ecto-sp13_S_contig79396.19227.1 vs. uniprot
Match: A0A6H5JWL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWL8_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 4.140e-31
Identity = 57/105 (54.29%), Postives = 73/105 (69.52%), Query Frame = 1

Query:    7 LFLAISAGLAAIAVPFWGVTVLSGTGFWELGENKRDHQFVMISTFMVEFLVGICMFVVVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYV 321
            + L +SA LAA  VP W  TV+ GT FW    +   + F+++S +++EFLVGICM V+V WL +FRMTEIKECW  H+ +RYYF LTL GT  NL LG+CG  YV
Sbjct:   86 IMLLVSASLAAATVPLWETTVVLGTHFWFTNSDPVKNDFIIMSIYIIEFLVGICMLVIVFWLAMFRMTEIKECWRFHSRIRYYFCLTLFGTAVNLGLGICGAAYV 190

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BLAST of mRNA_Ecto-sp13_S_contig79396.19227.1 vs. uniprot
Match: A0A6H5KRY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY2_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 7.580e-31
Identity = 57/106 (53.77%), Postives = 76/106 (71.70%), Query Frame = 1

Query:    7 LFLAISAGLAAIAVPFWGVTVLSGTGFWELGENKRDHQFVMISTFMVEFLVGICMFVVVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVV 324
            L L ++ G AA AVP W   +L+GT F    E+K+D  + ++S F+ EF+VGICM  +V+WLLLFRM EIKECW +H  +RYYFGLTL+ T  NL LG+ GT+Y+V
Sbjct:   64 LSLVLAVGGAAAAVPSWKTIILTGTYFSPYSEDKQDLDWSVVSRFLFEFIVGICMIAIVAWLLLFRMKEIKECWKVHTRIRYYFGLTLIATGVNLVLGIFGTVYIV 169

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig79396.19227.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig79396.19227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15


Match Name	E-value	Identity	Description
D8LNP0_ECTSI	1.080e-67	95.37	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
D8LNM5_ECTSI	2.900e-38	63.46	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LNN1_ECTSI	1.570e-37	62.04	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A6H5JZY2_9PHAE	9.310e-37	59.26	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LNM4_ECTSI	7.850e-36	58.33	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LNN2_ECTSI	6.210e-34	57.01	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K8K6_9PHAE	3.310e-33	56.07	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FTK5_ECTSI	2.700e-31	50.94	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JWL8_9PHAE	4.140e-31	54.29	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KRY2_9PHAE	7.580e-31	53.77	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig79396	contig	Ecto-sp13_S_contig79396:1..620 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	324
Hectar predicted targeting category	signal peptide
Exons	2
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-08_006400.1
Cds size	324

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464065.3769395-CDS-Ecto-sp13_S_contig79396:0..108	1681464065.3769395-CDS-Ecto-sp13_S_contig79396:0..108	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig79396 1..108 +
1681464065.3924377-CDS-Ecto-sp13_S_contig79396:404..620	1681464065.3924377-CDS-Ecto-sp13_S_contig79396:404..620	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig79396 405..620 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig79396.19227.1	prot_Ecto-sp13_S_contig79396.19227.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig79396 1..620 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig79396:1..620+
coding sequence from alignment at Ecto-sp13_S_contig79396:1..620+

protein sequence of mRNA_Ecto-sp13_S_contig79396.19227.1

>prot_Ecto-sp13_S_contig79396.19227.1 ID=prot_Ecto-sp13_S_contig79396.19227.1|Name=mRNA_Ecto-sp13_S_contig79396.19227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
VLLFLAISAGLAAIAVPFWGVTVLSGTGFWELGENKRDHQFVMISTFMVE
FLVGICMFVVVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLG
VCGTIYVV

mRNA from alignment at Ecto-sp13_S_contig79396:1..620+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig79396.19227.1 ID=mRNA_Ecto-sp13_S_contig79396.19227.1|Name=mRNA_Ecto-sp13_S_contig79396.19227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=620bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79396:1..620+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTCCTGTTCCTAGCCATCTCGGCGGGACTCGCCGCCATCGCCGTGCC
CTTCTGGGGTGTGACGGTGCTGTCCGGCACTGGGTTTTGGGAGTTGGGCG
AGAATAAGGTACGGTTTCGACCAAACGACTGTTTTGTTTTTGATGTGTTG
GCACTCACAACATATGCCACAGGTTCCTTGTTGCACCGTCTCTAGTATGT
GGTGCAGCGATCGAGATGAAGGAGCCTGTATGTGCGTGTGCGCGTTTGTG
GGCACTACGACACGCTACACGCCATTGATCTTGCTCTGAGAACGGAATTA
TTGCAGCACGATTAGACCCAGCTCGTGGACATGCTACATACAAGTCACTT
TTTCGCTTTCTGCATCGTTGTGCCAACCCTTCTCTGCCGGCGGCGGCCAT
GCAGCGAGATCACCAGTTCGTCATGATCTCCACCTTCATGGTCGAGTTCC
TCGTCGGCATCTGCATGTTCGTCGTTGTGTCCTGGCTGCTGCTGTTCCGG
ATGACGGAGATCAAGGAGTGCTGGATGATGCACGCCTGTCTCCGCTACTA
CTTCGGCCTGACTCTGCTCGGAACCGTCGGAAACTTGACCCTCGGCGTGT
GCGGCACGATCTACGTCGTC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig79396:1..620+

>mRNA_Ecto-sp13_S_contig79396.19227.1 ID=mRNA_Ecto-sp13_S_contig79396.19227.1|Name=mRNA_Ecto-sp13_S_contig79396.19227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79396:1..620+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTCCTGTTCCTAGCCATCTCGGCGGGACTCGCCGCCATCGCCGTGCC
CTTCTGGGGTGTGACGGTGCTGTCCGGCACTGGGTTTTGGGAGTTGGGCG
AGAATAAGCGAGATCACCAGTTCGTCATGATCTCCACCTTCATGGTCGAG
TTCCTCGTCGGCATCTGCATGTTCGTCGTTGTGTCCTGGCTGCTGCTGTT
CCGGATGACGGAGATCAAGGAGTGCTGGATGATGCACGCCTGTCTCCGCT
ACTACTTCGGCCTGACTCTGCTCGGAACCGTCGGAAACTTGACCCTCGGC
GTGTGCGGCACGATCTACGTCGTC