mRNA_Ecto-sp13_S_contig7936.19226.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7936.19226.1
Unique NamemRNA_Ecto-sp13_S_contig7936.19226.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7936.19226.1 vs. uniprot
Match: D7FXZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ6_ECTSI)

HSP 1 Score: 298 bits (762), Expect = 2.770e-89
Identity = 181/229 (79.04%), Postives = 187/229 (81.66%), Query Frame = 2 
Query:   32 MPRIVDLEDEPLDGDDYGGSEGHGYDDEYDDS-TADGNSLD-DEGATGIGRAANGGSSGAAAPVTLPESEYRESLGFLRASRKLALPGAGFDAADDGRIVALAALDRFGLLLVSSATGILVYAIEDLSSAAFGRGGQQXXXXX-DPALPVPVRADVALAGRPSRMLASRDNLRVAVAVGDKVLVFDTASLVNSGGGGAXXXXXXXXXXXXXXXXXXXXXXXLPPRALSW 709
            MPRIV+LEDEPLDGDDYGGS  HGYDDEYDDS TADGNSLD DE A G G AANGGSS AAAPVTLPESEYRESLGFLRASRKLALPG GFDAADDGR+VALAALDRFGLLLVSSATGILVYAIEDLSSAAFG+GGQ XXXXX DPA PVPVRADVALAGRPSRM+ASRDNLRVA+AVG+KVLV DTASLVN     A                       LPPRALSW
Sbjct:    1 MPRIVELEDEPLDGDDYGGSGDHGYDDEYDDSSTADGNSLDGDEEAAGTGSAANGGSSSAAAPVTLPESEYRESLGFLRASRKLALPGTGFDAADDGRVVALAALDRFGLLLVSSATGILVYAIEDLSSAAFGQGGQXXXXXXXDPASPVPVRADVALAGRPSRMVASRDNLRVAIAVGNKVLVLDTASLVNGAAAAAAPVATVALSSPDAGDSGD-----LPPRALSW 224
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7936.19226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXZ6_ECTSI2.770e-8979.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7936contigEcto-sp13_S_contig7936:1141..4034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size709
Hectar predicted targeting categoryother localisation
Exons3
Cds size678
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464065.289072-UTR-Ecto-sp13_S_contig7936:1140..11711681464065.289072-UTR-Ecto-sp13_S_contig7936:1140..1171Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7936 1141..1171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464065.3078372-CDS-Ecto-sp13_S_contig7936:1171..15171681464065.3078372-CDS-Ecto-sp13_S_contig7936:1171..1517Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7936 1172..1517 +
1681464065.32182-CDS-Ecto-sp13_S_contig7936:3042..32301681464065.32182-CDS-Ecto-sp13_S_contig7936:3042..3230Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7936 3043..3230 +
1681464065.3378525-CDS-Ecto-sp13_S_contig7936:3890..40341681464065.3378525-CDS-Ecto-sp13_S_contig7936:3890..4034Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7936 3891..4034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7936.19226.1prot_Ecto-sp13_S_contig7936.19226.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7936 1172..4034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7936.19226.1

>prot_Ecto-sp13_S_contig7936.19226.1 ID=prot_Ecto-sp13_S_contig7936.19226.1|Name=mRNA_Ecto-sp13_S_contig7936.19226.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=226bp
MPRIVDLEDEPLDGDDYGGSEGHGYDDEYDDSTADGNSLDDEGATGIGRA
ANGGSSGAAAPVTLPESEYRESLGFLRASRKLALPGAGFDAADDGRIVAL
AALDRFGLLLVSSATGILVYAIEDLSSAAFGRGGQQQQQQQDPALPVPVR
ADVALAGRPSRMLASRDNLRVAVAVGDKVLVFDTASLVNSGGGGAAAAPA
APVATVALSSPDAGDAGDLPPRALSW
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mRNA from alignment at Ecto-sp13_S_contig7936:1141..4034+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7936.19226.1 ID=mRNA_Ecto-sp13_S_contig7936.19226.1|Name=mRNA_Ecto-sp13_S_contig7936.19226.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2894bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7936:1141..4034+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCATTGCCCTCGCAGCAGGCCAGCAGAGGCCATGCCAAGGATAGTGGATT
TGGAAGACGAGCCTCTTGATGGGGATGATTATGGCGGGTCTGAGGGCCAC
GGCTACGACGATGAGTACGACGACAGCACCGCCGATGGAAATTCCTTGGA
CGATGAGGGCGCCACCGGCATCGGCAGGGCGGCCAACGGCGGTAGCAGCG
GCGCCGCCGCCCCTGTCACCCTACCAGAGTCCGAGTACCGTGAGAGTCTG
GGATTCCTGCGTGCGTCGAGGAAGCTGGCGCTCCCGGGTGCAGGTTTCGA
TGCAGCAGACGACGGCCGTATCGTTGCGCTGGCTGCTCTGGACCGATTTG
GCCTACTGCTGGTATCCTCCGCCACAGGTGGGTTGTGTATCCGCTGCAAC
AACGGCGGACAGCAGTATAAAAGCGGAGGCAACTCTGTTGCACATGTGGC
GCACCCACAACATCTGTTTATGTTGCAGGGGTACGTTGGACTCGACGAAC
GTTGCTTGCCGTCTGTTGAGCCTCGCCCTGGCCACGCAGAGGGGAGGGAC
ATCGAGTTTTCAAATTTAGGTTGGTAGTTCGTAGTTGGGCGTGCACCTCG
CGCCCCTCCTTTTCGGAGGCCCACGAGGCAAGTTTGGCTGCGTAACGGCT
ACCTCCTTGTACCGTGCTGCCAGAGCGACTTATAACTCAGAACTGCTGTG
CTGCCGTCTCCATCGTCTATTCGATGATGTTGTGATTGTTTTATTCATTT
TATTTTATCTCGTATGCTTGATCCAAAGAGGCGAGCGGCGTTGCACAAGA
ACTTGCGCAGAGATGTGGCTACAAGCAGCGTGCGCAGCAAGGGACAAGGA
TACTTTGCATGTTTATGTATAATAGGAACATGTGACGCTCTGCAGCCGAG
TCCTGGGTCAAGTACTGAGGTCTCACTAATGTCCACGTCCACTGCTACTG
CTATAGGGTTCAAAGAACCCCACACATTTTTTTCAAATAATCTATAAAGG
CAGCGTCCTCGAGATAACGACAGCGGTGAGGGTACTGTAGGTCTGTCCAG
GCGTTGCGCCCGAAGGCGTCGCGCCTGAAGCATCCATCGACTGTGACGGA
CACAGCGTGTCTGGGTTATGTGTCACACACGGAGCATTTTGCACGGTAGT
ACATTCGAAGATACCACACTGCCGACTTCGGCAGGGCTTAAAGTAGTATC
TATCGCCTGGATATGAGGATTACCTCGCAACCAGCGCTATGTAAAACGTA
TACCCCGCTGTGTGCAGCAGCACCATCACCACATAGACAACGTTATAGTA
TGCGCCTCTTCCACCCCCACTGGACCTCCATCCCGCTCCCGTCACCCCAC
GATACGGGTGGTTGTACGAGGCAAGCCAGAGGCCGACTTGTGGGAGTACT
GATGCCGTCAAATATGGCCCTTTGGCGCTCTCTCCCCCTTGCCAAAGAAT
CGAGCAGCCGCTCGTGGTCTACGCGGGGAGAAAGCCTGCAGCGAATAGGA
CCATGCTTAAGGCTTCCGATTCAGCAGACGCAGTTGATCTGTTCGATAGG
ATTGATCGTTTGATTCCACCAACCGATCCTTTGCAGGTAAGGAGATCCAG
CTCCATCCCCGGTGTTTCTGTCGCGTCTTACACAACAACAGTGCACCTCG
TCGTGGCTCACAGTGGCCTCCCAACGGGTGGATTGCTCCCTGCATCTACG
CCCCATCACTGCAGTACTCAACCAAAACCATGTGCAAACCCTACCCATGA
CCCCAGTGCCTATCTCCCTTCGTCTTTATTTCCATCTAGTTGTCAGAAGT
GTCGATGTGTGTACGGTTTTTTCCAACCCCGGACCTCGTGACCCCCCCCC
CCTCGCGCGCCCTCCCGGCCTCTTATCGTCGTTGGTACTGGTGGTGTTGC
AGGGATCTTAGTGTACGCCATCGAAGACCTGTCGTCAGCCGCTTTCGGTC
GGGGCGGGCAGCAGCAGCAGCAGCAGCAGGACCCCGCGTTGCCGGTGCCT
GTCCGAGCCGACGTGGCCCTGGCAGGACGGCCTTCGCGCATGTTGGCGTC
GCGAGACAACCTGCGTGTCGCGGTTGCCGTGGGAGACAAGGTAGGTGGGT
CGACGACTGCCACATATGGAGCTTTTTCTTTTTAGTTCGTTGGGCACTTC
GATTCAGAAGATGCTTGCTGCATCGACCGCCCTGGCGCCGATTATGACCG
ATGAGGAGGCGCCAGCCGTGCAGCCGCGGTTGACCATATATGGACGTATA
TGTAGGCCCCTCTCGTTGTTCCCAGACATTTTGTGTGTGCTTGTGCGTGT
TGCAAGCATCGGGCGCGCTAACCGCCTGACCAATTGAGATACGTCAGTCT
CAGCAGTGCAGCTAATAATGGGAAACGCTTGTTTAGGCCGTGTGTGTTTT
TGTGTACTTGATCGCATGTATCATCAGCCGCGCCAACTAAGTGGTCGATG
AAATATCGTCAGTCTTTTTTGCAGCGCTTGTACCGCGAATACGTCTGATT
TTCTCTGTGTTTTTTTTGCTTTGTTCGACCGTGCTTTTGTAATTGGCTCA
CGAATGAGCAATATGTGTGTGCTTGCCGCCTGACGAATACGCAATATGTG
TGTGCTTGCTTTTTTTTGTTCCAAATCACCAGCTGGACACGGCAGGATAT
TCCTGAATAACCCGCCCTAGCAGCTTAACATAGAGTGATGCATCTACTGC
CCCACCGAAATGCTTCTCACTCCCCCTCCATGACCGTCTTTTCCAACCAG
GTCCTTGTTTTCGACACCGCCTCCCTCGTCAACAGCGGCGGCGGCGGCGC
CGCCGCCGCCCCCGCCGCCCCCGTGGCAACTGTGGCCCTGTCCTCTCCCG
ACGCCGGCGACGCCGGCGACCTGCCTCCCCGAGCGCTTTCCTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7936:1141..4034+

>mRNA_Ecto-sp13_S_contig7936.19226.1 ID=mRNA_Ecto-sp13_S_contig7936.19226.1|Name=mRNA_Ecto-sp13_S_contig7936.19226.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=678bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7936:1141..4034+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCAAGGATAGTGGATTTGGAAGACGAGCCTCTTGATGGGGATGATTA
TGGCGGGTCTGAGGGCCACGGCTACGACGATGAGTACGACGACAGCACCG
CCGATGGAAATTCCTTGGACGATGAGGGCGCCACCGGCATCGGCAGGGCG
GCCAACGGCGGTAGCAGCGGCGCCGCCGCCCCTGTCACCCTACCAGAGTC
CGAGTACCGTGAGAGTCTGGGATTCCTGCGTGCGTCGAGGAAGCTGGCGC
TCCCGGGTGCAGGTTTCGATGCAGCAGACGACGGCCGTATCGTTGCGCTG
GCTGCTCTGGACCGATTTGGCCTACTGCTGGTATCCTCCGCCACAGGGAT
CTTAGTGTACGCCATCGAAGACCTGTCGTCAGCCGCTTTCGGTCGGGGCG
GGCAGCAGCAGCAGCAGCAGCAGGACCCCGCGTTGCCGGTGCCTGTCCGA
GCCGACGTGGCCCTGGCAGGACGGCCTTCGCGCATGTTGGCGTCGCGAGA
CAACCTGCGTGTCGCGGTTGCCGTGGGAGACAAGGTCCTTGTTTTCGACA
CCGCCTCCCTCGTCAACAGCGGCGGCGGCGGCGCCGCCGCCGCCCCCGCC
GCCCCCGTGGCAACTGTGGCCCTGTCCTCTCCCGACGCCGGCGACGCCGG
CGACCTGCCTCCCCGAGCGCTTTCCTGG
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