mRNA_Ecto-sp13_S_contig7936.19225.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7936.19225.1
Unique NamemRNA_Ecto-sp13_S_contig7936.19225.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7936.19225.1 vs. uniprot
Match: A0A6H5J734_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J734_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 1.250e-61
Identity = 111/133 (83.46%), Postives = 115/133 (86.47%), Query Frame = -2 
Query:    3 VSTFMCARSAKVVLLSVVLSLCPMWCRVSGVT-VAPTPAPAEHNDSLWDTISGDPDFSKLTACLEMADPSAMDLLKASPGSATTAQPLTLFAPTDLAFERPAWRMYSGARGGXXXXXXXXNGEADHNGTIFDD 398
            V+TFMCARSAKVVLLSVVLSL P WCR+ GVT VAPTPAPAEH+DSLWDTISGDPDFSKLTACLEMADPS MDLLKASPGSA TAQPLTLFAPTDLAFE+PAWR YSG  G         NGEADHNGTIFDD
Sbjct:   77 VATFMCARSAKVVLLSVVLSLSPKWCRIGGVTAVAPTPAPAEHHDSLWDTISGDPDFSKLTACLEMADPSVMDLLKASPGSAATAQPLTLFAPTDLAFEQPAWRKYSGGAGS--------NGEADHNGTIFDD 201
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BLAST of mRNA_Ecto-sp13_S_contig7936.19225.1 vs. uniprot
Match: D7FXZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ5_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 4.690e-50
Identity = 93/109 (85.32%), Postives = 97/109 (88.99%), Query Frame = -2 
Query:    3 MWCRVSGVTVAPTPAPAEHNDSLWDTISGDPDFSKLTACLEMADPSAMDLLKASPGSATTAQPLTLFAPTDLAFERPAWRMYSGARGGXXXXXXXXNGEADHNGTIFDD 329
            MWCRV GVTVAPTPAPAEH+DSLWDTISGDPDFSKLTACLE+A PS MDLLKASPGSA TAQPLTLFAPTDLAFE+PAWR+YSG        XXXXNGEADHNGTIFDD
Sbjct:    1 MWCRVGGVTVAPTPAPAEHDDSLWDTISGDPDFSKLTACLEVAGPSVMDLLKASPGSAATAQPLTLFAPTDLAFEQPAWRIYSGGX------XXXXNGEADHNGTIFDD 103
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7936.19225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J734_9PHAE1.250e-6183.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXZ5_ECTSI4.690e-5085.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7936contigEcto-sp13_S_contig7936:340..739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size402
Hectar predicted targeting categoryother localisation
Exons1
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464065.2552266-CDS-Ecto-sp13_S_contig7936:339..7381681464065.2552266-CDS-Ecto-sp13_S_contig7936:339..738Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7936 340..738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7936.19225.1prot_Ecto-sp13_S_contig7936.19225.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7936 340..738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7936.19225.1

>prot_Ecto-sp13_S_contig7936.19225.1 ID=prot_Ecto-sp13_S_contig7936.19225.1|Name=mRNA_Ecto-sp13_S_contig7936.19225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
LSSNIVPLWSASPLPPPPPPPPPPLAPLYILQAGRSNARSVGAKSVSGCA
VVAEPGDAFSRSIAEGSAISRHAVSLEKSGSPLMVSQRLSLCSAGAGVGA
TVTPLTRHHIGQRDSTTDSSTTFAERAHINVET
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mRNA from alignment at Ecto-sp13_S_contig7936:340..739+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7936.19225.1 ID=mRNA_Ecto-sp13_S_contig7936.19225.1|Name=mRNA_Ecto-sp13_S_contig7936.19225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=400bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7936:340..739+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTCGTCAAATATAGTGCCGTTGTGGTCGGCCTCCCCGTTGCCGCCGCC
GCCGCCGCCGCCGCCGCCGCCCCTGGCGCCGCTATACATTCTCCAGGCCG
GCCGCTCGAACGCCAGGTCCGTGGGCGCGAAGAGCGTCAGCGGCTGCGCT
GTCGTCGCCGAACCAGGCGATGCCTTCAGCAGGTCCATCGCGGAAGGGTC
AGCCATCTCCAGGCACGCCGTCAGCTTGGAGAAGTCGGGATCCCCGCTAA
TGGTATCCCAGAGGCTGTCATTATGCTCGGCAGGGGCAGGAGTTGGGGCG
ACAGTCACGCCGCTTACCCGGCACCACATCGGACAGAGGGACAGCACTAC
CGACAGCAGCACCACTTTCGCTGAGCGGGCACACATAAACGTCGAGACAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7936:340..739+

>mRNA_Ecto-sp13_S_contig7936.19225.1 ID=mRNA_Ecto-sp13_S_contig7936.19225.1|Name=mRNA_Ecto-sp13_S_contig7936.19225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7936:340..739+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTCGTCAAATATAGTGCCGTTGTGGTCGGCCTCCCCGTTGCCGCCGCC
GCCGCCGCCGCCGCCGCCGCCCCTGGCGCCGCTATACATTCTCCAGGCCG
GCCGCTCGAACGCCAGGTCCGTGGGCGCGAAGAGCGTCAGCGGCTGCGCT
GTCGTCGCCGAACCAGGCGATGCCTTCAGCAGGTCCATCGCGGAAGGGTC
AGCCATCTCCAGGCACGCCGTCAGCTTGGAGAAGTCGGGATCCCCGCTAA
TGGTATCCCAGAGGCTGTCATTATGCTCGGCAGGGGCAGGAGTTGGGGCG
ACAGTCACGCCGCTTACCCGGCACCACATCGGACAGAGGGACAGCACTAC
CGACAGCAGCACCACTTTCGCTGAGCGGGCACACATAAACGTCGAGACA
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