mRNA_Ecto-sp13_S_contig7932.19221.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7932.19221.1
Unique NamemRNA_Ecto-sp13_S_contig7932.19221.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7932.19221.1 vs. uniprot
Match: D7FI06_ECTSI (GRAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI06_ECTSI)

HSP 1 Score: 667 bits (1722), Expect = 3.260e-234
Identity = 377/417 (90.41%), Postives = 385/417 (92.33%), Query Frame = 1 
Query:   70 EEEGREREKAEGPPQQEEDRETGAPEGGVATAGTGPDAGVAAAAATVVEVGLCLQFVEGLCARAEEYSRHDAAETWKPLQDTVSRLERDNATLRSLLEPKYRAVGAAPPPVPIWSGRRSFGETHGSSVGSAATNVGNTPSKRVVELLRSTPLFVIEGKQVKAKVVSTVAXXXXXXXXXXXXXXXXXXXXXXXAPGSAAADLAGSRRHALLVRTAVKALTDVVGRVCESREEAFLKARLPGAQAYTVELERYGSTIAGGSALRATASSPEGRWASAGSVEVDDDLWRLFAAQETRLYSSSAALGKKPGRLYVTYSTLWFHSKVLGFESRHVLPLAEVVSITLLGTALDLSSSLIIATNSGGVPGELMFIFPGQKRRQVEPLEVLLRQLAVLAAKERAATAAIAEATEATAVASPDVSS 1320
            EEEGRE EKAEGPP+QEED+ETG PEGGVATAG G DA VAAAAATVVEVGLCLQFVEGLCARAEEYSRHDAAETW+PLQDTVSRLERDNATLRSLLEPKYRAVGAAPPPVPIWSGRRSFGET+GSSVGSAATNVGN PSKRVVELLRSTPLFVI+GKQVKAKVVST A  XXXXXXX              A GSAA+DL GSRRHALLVR AVKALT+VVGRVCESREEAFLKARLPGAQAYTVELERYGSTIAGGSALRATASSPE  WASAGSVEVDDDLWRLFAAQETRLYSSSAALGKKPGRLYVTYSTLWFHSKVLGFESRHVLPLAEVVSITLLGTALDLSSSL+IATNSGGVPGELMFIFPGQKRRQVEPLEVLLRQLAVLAAKERAATA   EATEATA ASPDVSS
Sbjct:  330 EEEGREGEKAEGPPRQEEDQETGVPEGGVATAGAGADAVVAAAAATVVEVGLCLQFVEGLCARAEEYSRHDAAETWRPLQDTVSRLERDNATLRSLLEPKYRAVGAAPPPVPIWSGRRSFGETYGSSVGSAATNVGNAPSKRVVELLRSTPLFVIDGKQVKAKVVSTAAAAXXXXXXXKRDGERQIDGSSS-ATGSAASDLGGSRRHALLVRAAVKALTEVVGRVCESREEAFLKARLPGAQAYTVELERYGSTIAGGSALRATASSPERDWASAGSVEVDDDLWRLFAAQETRLYSSSAALGKKPGRLYVTYSTLWFHSKVLGFESRHVLPLAEVVSITLLGTALDLSSSLVIATNSGGVPGELMFIFPGQKRRQVEPLEVLLRQLAVLAAKERAATA---EATEATAAASPDVSS 742
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7932.19221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FI06_ECTSI3.260e-23490.41GRAM domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7932contigEcto-sp13_S_contig7932:1..2565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1323
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_006590.1
Cds size1323
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464064.9538484-CDS-Ecto-sp13_S_contig7932:0..2161681464064.9538484-CDS-Ecto-sp13_S_contig7932:0..216Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7932 1..216 +
1681464064.9875038-CDS-Ecto-sp13_S_contig7932:553..6631681464064.9875038-CDS-Ecto-sp13_S_contig7932:553..663Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7932 554..663 +
1681464065.002062-CDS-Ecto-sp13_S_contig7932:1032..17381681464065.002062-CDS-Ecto-sp13_S_contig7932:1032..1738Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7932 1033..1738 +
1681464065.0128975-CDS-Ecto-sp13_S_contig7932:2274..25651681464065.0128975-CDS-Ecto-sp13_S_contig7932:2274..2565Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7932 2275..2565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7932.19221.1prot_Ecto-sp13_S_contig7932.19221.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7932 1..2565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7932.19221.1

>prot_Ecto-sp13_S_contig7932.19221.1 ID=prot_Ecto-sp13_S_contig7932.19221.1|Name=mRNA_Ecto-sp13_S_contig7932.19221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=441bp
GSNSSSGASGSAASASAPGPVSPEEEGREREKAEGPPQQEEDRETGAPEG
GVATAGTGPDAGVAAAAATVVEVGLCLQFVEGLCARAEEYSRHDAAETWK
PLQDTVSRLERDNATLRSLLEPKYRAVGAAPPPVPIWSGRRSFGETHGSS
VGSAATNVGNTPSKRVVELLRSTPLFVIEGKQVKAKVVSTVAAAVAAASG
AAKRDGERQGDGSSSAPGSAAADLAGSRRHALLVRTAVKALTDVVGRVCE
SREEAFLKARLPGAQAYTVELERYGSTIAGGSALRATASSPEGRWASAGS
VEVDDDLWRLFAAQETRLYSSSAALGKKPGRLYVTYSTLWFHSKVLGFES
RHVLPLAEVVSITLLGTALDLSSSLIIATNSGGVPGELMFIFPGQKRRQV
EPLEVLLRQLAVLAAKERAATAAIAEATEATAVASPDVSS*
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mRNA from alignment at Ecto-sp13_S_contig7932:1..2565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7932.19221.1 ID=mRNA_Ecto-sp13_S_contig7932.19221.1|Name=mRNA_Ecto-sp13_S_contig7932.19221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2565bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7932:1..2565+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAGCAACAGCAGCAGCGGCGCGTCAGGCTCCGCGGCGTCGGCGTCGGC
CCCTGGTCCTGTTTCTCCGGAAGAGGAGGGAAGGGAGAGAGAGAAGGCGG
AGGGCCCTCCCCAGCAGGAGGAGGACCGAGAAACCGGAGCGCCGGAGGGC
GGGGTAGCGACGGCTGGTACCGGTCCAGACGCGGGCGTTGCGGCCGCTGC
TGCTACTGTCGTTGAGGTGAGGTTGCTGCAGCGGACCCGAGGGTCACGAC
CGGTGTGCTGGACAAATGCTTGTTTATGATATGCAGCGTCACGGGGGCAG
CGTCACGGGGGCGGCGCTTGATTCGAACCCGGGAAGTCGCAGGAGAGGCA
TGTACCGGTGCATCGTCGAAAACGTACTTCGAAGTAAATATGGAGCTTGG
TGAGACCTCGGTTGTAGGTTCACGAAAAGCAGGCAAATCAGCACACCCGA
CACGAACCCTCGTACACGAGCAAATATATCAAGAATGCATCTCTTTGGCC
CGCATCTTCATGACGTGTGCTACGCCGACGAAACGCTGAACGTGTTCAAC
AAGGTGGGACTGTGCCTGCAGTTCGTGGAAGGGCTTTGTGCGCGTGCCGA
GGAGTATAGCAGGCACGACGCAGCCGAAACGTGGAAGCCGCTCCAAGACA
CAGTTTCCAGGCTGTGAGTTGACCATGATGACTCTTCGTGTGTCGATGCG
CCAGTGAACTCTGCACCTCTTTCCCGCACGCTGTCCGCAAGGGCTTCAAT
GCTCGAGCGGTTATTCTTGTCTTGTATTTTGGTTCTTCCTTGACCGTGCA
ACCACAACAAGACCACGGGTGCAGGTCAATGGCATTCCAAAACCAGAATA
ATCGGTGTACGGGCCCTCGTCTAAATGCTGTTGTTTTGCCTCGGCACGCT
GCGTGTTTGATGTCGGGGAGAGTAAAGAGTGTCCCGTCTGTCGCAAGTCA
ACCACAGTCCGATTCATGCCGCCGGTGGCTGGCCTCTTTTTTTATGTGCG
GGATTTCGACGGCCCTTTGTACTTGTGCCCAGGGAGCGTGACAACGCGAC
TCTGCGTTCGCTGCTGGAGCCCAAGTACCGGGCCGTGGGAGCAGCGCCCC
CGCCAGTGCCGATCTGGTCCGGACGGCGAAGCTTCGGCGAAACGCACGGG
TCGTCGGTGGGGTCAGCAGCTACCAACGTCGGGAACACCCCCAGCAAGCG
GGTCGTCGAGCTGCTTCGGTCGACCCCGCTCTTCGTCATCGAAGGGAAGC
AAGTCAAGGCGAAGGTGGTATCGACGGTGGCGGCGGCGGTGGCGGCGGCG
AGCGGCGCTGCCAAGCGGGATGGCGAGCGACAAGGCGATGGAAGCAGCTC
TGCCCCGGGTTCCGCGGCTGCCGATCTGGCCGGGAGTCGTCGGCATGCCT
TGCTGGTGCGGACGGCCGTCAAAGCCCTCACGGACGTGGTGGGCCGAGTG
TGCGAATCCCGCGAGGAGGCGTTCTTAAAGGCCCGCCTCCCCGGCGCGCA
GGCCTACACCGTGGAGCTGGAGAGATATGGGTCCACGATCGCGGGCGGGA
GCGCGCTCAGAGCCACCGCCTCGTCTCCGGAGGGACGCTGGGCCAGTGCC
GGCAGTGTGGAGGTCGACGACGACCTGTGGCGGCTCTTCGCCGCGCAGGA
GACGCGGTTGTACAGCTCGTCGGCCGCCTTGGGGAAGAAGCCCGGGAGGC
TCTACGTGACTTACAGCACGCTGTGGTTCCATTCAAAGGTAGGCGGAGAA
GCAATCGGGTTTATTCACCCTCGGTGGCTATATGGAGAAGAGTGCATGTT
GGTTGTATTTTTTTACATCCCATTCAGGTGTTGTTTCGATCCAGGTTTAG
CTTCGTGTCTCGGTTCAGCGAGCGGGGGGGAGTTGGATTCGTTTTGAGCT
TCGTGAGGCACGCGTGCCTGCGTCGTTTGAAACCAGGAACGGCGACGTAA
CTCACTCACCCTTCATCCTCAAAGCGTTGATGCGGGGTTTACCCTCTGGG
GTTCTGCCTATCTCTAACTCTGTTGGTGTGCATACCCACTGGCCTCGGCG
CACCTTAGCAGGTCCGAGGCCTGTCTTTTATGGACAGGCCATCGATTTCA
TCACCCCAACGATGCCCCCTGGACGCTGACAAGAGAGAAAGATGTGTCGG
CTGTCTTTGTGGCTCACCGCTCCACTCGCCGCACACCCTCTTGTTTTCTT
TTTTGCCCGTTCGCCTTCGCCTGGAACGCCTTGAACATACCCTACCGTCT
TGAATGTCGGCACAAATGCACAAGGTCTTGGGATTCGAATCGAGGCACGT
GCTGCCTCTTGCCGAGGTGGTGTCCATCACTCTGCTGGGCACGGCGCTCG
ACCTTTCGTCGAGCCTGATCATCGCCACCAACAGCGGCGGGGTGCCTGGG
GAGCTCATGTTCATCTTCCCGGGGCAGAAGCGGCGGCAGGTGGAGCCGCT
GGAGGTCCTTCTCCGGCAGCTGGCGGTGCTCGCCGCCAAGGAGAGGGCGG
CGACGGCGGCGATAGCGGAGGCAACAGAGGCAACAGCAGTAGCGTCGCCC
GACGTTTCGTCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7932:1..2565+

>mRNA_Ecto-sp13_S_contig7932.19221.1 ID=mRNA_Ecto-sp13_S_contig7932.19221.1|Name=mRNA_Ecto-sp13_S_contig7932.19221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1323bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7932:1..2565+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAGCAACAGCAGCAGCGGCGCGTCAGGCTCCGCGGCGTCGGCGTCGGC
CCCTGGTCCTGTTTCTCCGGAAGAGGAGGGAAGGGAGAGAGAGAAGGCGG
AGGGCCCTCCCCAGCAGGAGGAGGACCGAGAAACCGGAGCGCCGGAGGGC
GGGGTAGCGACGGCTGGTACCGGTCCAGACGCGGGCGTTGCGGCCGCTGC
TGCTACTGTCGTTGAGGTGGGACTGTGCCTGCAGTTCGTGGAAGGGCTTT
GTGCGCGTGCCGAGGAGTATAGCAGGCACGACGCAGCCGAAACGTGGAAG
CCGCTCCAAGACACAGTTTCCAGGCTGGAGCGTGACAACGCGACTCTGCG
TTCGCTGCTGGAGCCCAAGTACCGGGCCGTGGGAGCAGCGCCCCCGCCAG
TGCCGATCTGGTCCGGACGGCGAAGCTTCGGCGAAACGCACGGGTCGTCG
GTGGGGTCAGCAGCTACCAACGTCGGGAACACCCCCAGCAAGCGGGTCGT
CGAGCTGCTTCGGTCGACCCCGCTCTTCGTCATCGAAGGGAAGCAAGTCA
AGGCGAAGGTGGTATCGACGGTGGCGGCGGCGGTGGCGGCGGCGAGCGGC
GCTGCCAAGCGGGATGGCGAGCGACAAGGCGATGGAAGCAGCTCTGCCCC
GGGTTCCGCGGCTGCCGATCTGGCCGGGAGTCGTCGGCATGCCTTGCTGG
TGCGGACGGCCGTCAAAGCCCTCACGGACGTGGTGGGCCGAGTGTGCGAA
TCCCGCGAGGAGGCGTTCTTAAAGGCCCGCCTCCCCGGCGCGCAGGCCTA
CACCGTGGAGCTGGAGAGATATGGGTCCACGATCGCGGGCGGGAGCGCGC
TCAGAGCCACCGCCTCGTCTCCGGAGGGACGCTGGGCCAGTGCCGGCAGT
GTGGAGGTCGACGACGACCTGTGGCGGCTCTTCGCCGCGCAGGAGACGCG
GTTGTACAGCTCGTCGGCCGCCTTGGGGAAGAAGCCCGGGAGGCTCTACG
TGACTTACAGCACGCTGTGGTTCCATTCAAAGGTCTTGGGATTCGAATCG
AGGCACGTGCTGCCTCTTGCCGAGGTGGTGTCCATCACTCTGCTGGGCAC
GGCGCTCGACCTTTCGTCGAGCCTGATCATCGCCACCAACAGCGGCGGGG
TGCCTGGGGAGCTCATGTTCATCTTCCCGGGGCAGAAGCGGCGGCAGGTG
GAGCCGCTGGAGGTCCTTCTCCGGCAGCTGGCGGTGCTCGCCGCCAAGGA
GAGGGCGGCGACGGCGGCGATAGCGGAGGCAACAGAGGCAACAGCAGTAG
CGTCGCCCGACGTTTCGTCGTGA
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