mRNA_Ecto-sp13_S_contig79304.19219.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig79304.19219.1
Unique NamemRNA_Ecto-sp13_S_contig79304.19219.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig79304.19219.1 vs. uniprot
Match: D8LBB6_ECTSI (Carnitine O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB6_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.080e-20
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 VGTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFA 120
            VGTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFA
Sbjct:  374 VGTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFA 413
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BLAST of mRNA_Ecto-sp13_S_contig79304.19219.1 vs. uniprot
Match: A0A6H5L403_9PHAE (Carn_acyltransf domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L403_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.740e-20
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 VGTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFA 120
            VGTCTNRWYDKLQLIVFENG+AGVNFEHTWVDGHTVLRFA
Sbjct:  619 VGTCTNRWYDKLQLIVFENGSAGVNFEHTWVDGHTVLRFA 658
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BLAST of mRNA_Ecto-sp13_S_contig79304.19219.1 vs. uniprot
Match: A0A117NL52_9EURO (CoA_binding domain-containing protein n=3 Tax=Penicillium TaxID=5073 RepID=A0A117NL52_9EURO)

HSP 1 Score: 81.6 bits (200), Expect = 4.830e-17
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 VGTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFA 120
            VGTCTNRWYDKLQ+IV ENG+AG+NFEHT VDGHTVLRFA
Sbjct:  353 VGTCTNRWYDKLQIIVCENGSAGINFEHTGVDGHTVLRFA 392
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BLAST of mRNA_Ecto-sp13_S_contig79304.19219.1 vs. uniprot
Match: A0A0M9WIY6_9EURO (Carn_acyltransf domain-containing protein n=11 Tax=Penicillium TaxID=5073 RepID=A0A0M9WIY6_9EURO)

HSP 1 Score: 81.6 bits (200), Expect = 4.850e-17
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 VGTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFA 120
            VGTCTNRWYDKLQ+IV ENG+AG+NFEHT VDGHTVLRFA
Sbjct:  315 VGTCTNRWYDKLQIIVCENGSAGINFEHTGVDGHTVLRFA 354
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BLAST of mRNA_Ecto-sp13_S_contig79304.19219.1 vs. uniprot
Match: A0A167Q0M7_CALVF (Carn_acyltransf domain-containing protein n=1 Tax=Calocera viscosa (strain TUFC12733) TaxID=1330018 RepID=A0A167Q0M7_CALVF)

HSP 1 Score: 81.3 bits (199), Expect = 6.630e-17
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 VGTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFA 120
            VG+CTNRWYDKLQ+IV ENGAAG+NFEHT VDGHTVLRFA
Sbjct:  392 VGSCTNRWYDKLQIIVCENGAAGINFEHTGVDGHTVLRFA 431
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BLAST of mRNA_Ecto-sp13_S_contig79304.19219.1 vs. uniprot
Match: M5FP90_DACPD (Carnitine acetyl transferase n=1 Tax=Dacryopinax primogenitus (strain DJM 731) TaxID=1858805 RepID=M5FP90_DACPD)

HSP 1 Score: 81.3 bits (199), Expect = 6.630e-17
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 VGTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFA 120
            VG+CTNRWYDKLQ+IV ENGAAG+NFEHT VDGHTVLRFA
Sbjct:  363 VGSCTNRWYDKLQIIVCENGAAGINFEHTGVDGHTVLRFA 402
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BLAST of mRNA_Ecto-sp13_S_contig79304.19219.1 vs. uniprot
Match: A0A165FGS5_9BASI (Acyltransferase ChoActase/COT/CPT n=1 Tax=Calocera cornea HHB12733 TaxID=1353952 RepID=A0A165FGS5_9BASI)

HSP 1 Score: 81.3 bits (199), Expect = 6.630e-17
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 VGTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFA 120
            VG+CTNRWYDKLQ+IV ENGAAG+NFEHT VDGHTVLRFA
Sbjct:  324 VGSCTNRWYDKLQIIVCENGAAGINFEHTGVDGHTVLRFA 363
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BLAST of mRNA_Ecto-sp13_S_contig79304.19219.1 vs. uniprot
Match: A0A074YSM5_AURSE (Carn_acyltransf domain-containing protein n=18 Tax=Aureobasidium TaxID=5579 RepID=A0A074YSM5_AURSE)

HSP 1 Score: 81.3 bits (199), Expect = 6.630e-17
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 VGTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFA 120
            VGTCTNRWYDKLQLIV +NG+AG+NFEHT VDGHTVLRFA
Sbjct:  296 VGTCTNRWYDKLQLIVCQNGSAGINFEHTGVDGHTVLRFA 335
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BLAST of mRNA_Ecto-sp13_S_contig79304.19219.1 vs. uniprot
Match: A0A177VRE5_9BASI (Carn_acyltransf domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VRE5_9BASI)

HSP 1 Score: 80.9 bits (198), Expect = 9.050e-17
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 VGTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFA 120
            VGTCTNRWYDKLQ+IV  NGAAG+NFEHT VDGHTVLRFA
Sbjct:  335 VGTCTNRWYDKLQIIVCSNGAAGINFEHTGVDGHTVLRFA 374
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BLAST of mRNA_Ecto-sp13_S_contig79304.19219.1 vs. uniprot
Match: A0A4T0FKQ0_9BASI (Carn_acyltransf domain-containing protein n=1 Tax=Wallemia hederae TaxID=1540922 RepID=A0A4T0FKQ0_9BASI)

HSP 1 Score: 80.9 bits (198), Expect = 9.070e-17
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 VGTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFA 120
            VGTCTNRWYDKLQ+I+ ENGAAG+NFEH+ VDGHTVLRFA
Sbjct:  291 VGTCTNRWYDKLQIIICENGAAGINFEHSGVDGHTVLRFA 330
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig79304.19219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBB6_ECTSI1.080e-20100.00Carnitine O-acyltransferase n=1 Tax=Ectocarpus sil... [more]
A0A6H5L403_9PHAE2.740e-2097.50Carn_acyltransf domain-containing protein n=1 Tax=... [more]
A0A117NL52_9EURO4.830e-1787.50CoA_binding domain-containing protein n=3 Tax=Peni... [more]
A0A0M9WIY6_9EURO4.850e-1787.50Carn_acyltransf domain-containing protein n=11 Tax... [more]
A0A167Q0M7_CALVF6.630e-1787.50Carn_acyltransf domain-containing protein n=1 Tax=... [more]
M5FP90_DACPD6.630e-1787.50Carnitine acetyl transferase n=1 Tax=Dacryopinax p... [more]
A0A165FGS5_9BASI6.630e-1787.50Acyltransferase ChoActase/COT/CPT n=1 Tax=Calocera... [more]
A0A074YSM5_AURSE6.630e-1787.50Carn_acyltransf domain-containing protein n=18 Tax... [more]
A0A177VRE5_9BASI9.050e-1787.50Carn_acyltransf domain-containing protein n=2 Tax=... [more]
A0A4T0FKQ0_9BASI9.070e-1785.00Carn_acyltransf domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig79304contigEcto-sp13_S_contig79304:165..284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score93.2
Seed ortholog evalue2.9e-17
Seed eggNOG ortholog2880.D8LBB6
Preferred nameYAT1
Model size120
KEGG rclassRC00004,RC00037
KEGG koko:K00624
KEGG ReactionR02396
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004092,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006066,GO:0006575,GO:0006577,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0009437,GO:0009987,GO:0016406,GO:0016407,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901615
Exons1
EggNOG free text desc.carnitine O-acyltransferase activity
EggNOG OGsKOG3719@1,KOG3719@2759
EC2.3.1.7
Cds size120
COG Functional cat.I
BiGG ReactioniMM904.YAR035W,iND750.YAR035W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464064.829331-CDS-Ecto-sp13_S_contig79304:164..2841681464064.829331-CDS-Ecto-sp13_S_contig79304:164..284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig79304 165..284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig79304.19219.1prot_Ecto-sp13_S_contig79304.19219.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig79304 165..284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig79304.19219.1

>prot_Ecto-sp13_S_contig79304.19219.1 ID=prot_Ecto-sp13_S_contig79304.19219.1|Name=mRNA_Ecto-sp13_S_contig79304.19219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=40bp
VGTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFA
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mRNA from alignment at Ecto-sp13_S_contig79304:165..284+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig79304.19219.1 ID=mRNA_Ecto-sp13_S_contig79304.19219.1|Name=mRNA_Ecto-sp13_S_contig79304.19219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79304:165..284+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGGCACGTGCACGAACCGCTGGTACGACAAGCTGCAGCTTATCGTCTT
CGAAAACGGCGCCGCGGGGGTAAACTTCGAGCATACCTGGGTCGATGGAC
ACACGGTACTCCGCTTTGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig79304:165..284+

>mRNA_Ecto-sp13_S_contig79304.19219.1 ID=mRNA_Ecto-sp13_S_contig79304.19219.1|Name=mRNA_Ecto-sp13_S_contig79304.19219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79304:165..284+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGGCACGTGCACGAACCGCTGGTACGACAAGCTGCAGCTTATCGTCTT
CGAAAACGGCGCCGCGGGGGTAAACTTCGAGCATACCTGGGTCGATGGAC
ACACGGTACTCCGCTTTGCA
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