mRNA_Ecto-sp13_S_contig79290.19217.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig79290.19217.1
Unique NamemRNA_Ecto-sp13_S_contig79290.19217.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig79290.19217.1 vs. uniprot
Match: A0A8C9TWD8_SCLFO (Coronin n=4 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9TWD8_SCLFO)

HSP 1 Score: 65.1 bits (157), Expect = 2.990e-11
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 SGVILPFYDDESSLLYLAGKGDGNIRYYEVRPCLPYV 111
            SGV+ PFYD ++ +LYLAGKGDGNIRYYE+ P  PYV
Sbjct:  286 SGVLFPFYDPDTHMLYLAGKGDGNIRYYEISPEKPYV 322
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BLAST of mRNA_Ecto-sp13_S_contig79290.19217.1 vs. uniprot
Match: UPI00032914EF (coronin-2A n=1 Tax=Dasypus novemcinctus TaxID=9361 RepID=UPI00032914EF)

HSP 1 Score: 64.7 bits (156), Expect = 4.020e-11
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 SGVILPFYDDESSLLYLAGKGDGNIRYYEVRPCLPYV 111
            SGV+ PFYD ++S+LY+ GKGDGNIRYYEVRP  PY+
Sbjct:  271 SGVLFPFYDVDTSVLYVVGKGDGNIRYYEVRPEQPYL 307
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BLAST of mRNA_Ecto-sp13_S_contig79290.19217.1 vs. uniprot
Match: A0A498NFH4_LABRO (Coronin n=2 Tax=Labeo rohita TaxID=84645 RepID=A0A498NFH4_LABRO)

HSP 1 Score: 64.3 bits (155), Expect = 5.530e-11
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 SGVILPFYDDESSLLYLAGKGDGNIRYYEVRPCLPYV 111
            SGV+ PFYD ++ +LY+AGKGDGNIRYYE+ P  PYV
Sbjct: 1143 SGVLFPFYDPDTHMLYIAGKGDGNIRYYEISPEKPYV 1179
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BLAST of mRNA_Ecto-sp13_S_contig79290.19217.1 vs. uniprot
Match: A0A673FS89_9TELE (Coronin n=14 Tax=Cyprininae TaxID=2743694 RepID=A0A673FS89_9TELE)

HSP 1 Score: 64.3 bits (155), Expect = 5.540e-11
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 SGVILPFYDDESSLLYLAGKGDGNIRYYEVRPCLPYV 111
            SGV+ PFYD ++ +LY+AGKGDGNIRYYE+ P  PYV
Sbjct:  271 SGVLFPFYDPDTHMLYIAGKGDGNIRYYEISPEKPYV 307
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BLAST of mRNA_Ecto-sp13_S_contig79290.19217.1 vs. uniprot
Match: D8LU94_ECTSI (Coronin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU94_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 5.580e-11
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 1 
Query:    1 SGVILPFYDDESSLLYLAGKGDGNIRYYE 87
            +GVILPFYDDESSLLYLAGKGDGNIRYYE
Sbjct:  265 AGVILPFYDDESSLLYLAGKGDGNIRYYE 293
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BLAST of mRNA_Ecto-sp13_S_contig79290.19217.1 vs. uniprot
Match: A0A672M6E9_SINGR (Coronin n=38 Tax=Cyprinoidei TaxID=30727 RepID=A0A672M6E9_SINGR)

HSP 1 Score: 64.3 bits (155), Expect = 5.580e-11
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 SGVILPFYDDESSLLYLAGKGDGNIRYYEVRPCLPYV 111
            SGV+ PFYD ++ +LY+AGKGDGNIRYYE+ P  PYV
Sbjct:  276 SGVLFPFYDPDTHMLYIAGKGDGNIRYYEISPEKPYV 312
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BLAST of mRNA_Ecto-sp13_S_contig79290.19217.1 vs. uniprot
Match: Q6P935_DANRE (Coronin n=13 Tax=Cyprinoidei TaxID=30727 RepID=Q6P935_DANRE)

HSP 1 Score: 64.3 bits (155), Expect = 5.590e-11
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 SGVILPFYDDESSLLYLAGKGDGNIRYYEVRPCLPYV 111
            SGV+ PFYD ++ +LY+AGKGDGNIRYYE+ P  PYV
Sbjct:  271 SGVLFPFYDPDTHMLYIAGKGDGNIRYYEISPEKPYV 307
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BLAST of mRNA_Ecto-sp13_S_contig79290.19217.1 vs. uniprot
Match: A0A3N0Y2F7_ANAGA (Coronin n=2 Tax=Xenocypridinae TaxID=2743747 RepID=A0A3N0Y2F7_ANAGA)

HSP 1 Score: 63.9 bits (154), Expect = 7.630e-11
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 SGVILPFYDDESSLLYLAGKGDGNIRYYEVRPCLPYV 111
            SGVI PFYD ++ +LYLAGKGDGNIRYYEV    PYV
Sbjct:  332 SGVIFPFYDADTHMLYLAGKGDGNIRYYEVSAVKPYV 368
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BLAST of mRNA_Ecto-sp13_S_contig79290.19217.1 vs. uniprot
Match: G3Q435_GASAC (Coronin n=4 Tax=Gasterosteidae TaxID=69291 RepID=G3Q435_GASAC)

HSP 1 Score: 63.2 bits (152), Expect = 1.430e-10
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 SGVILPFYDDESSLLYLAGKGDGNIRYYEVRPCLPYV 111
            +GV+ PFYD ++ +LYLAGKGDGNIRYYE+ P  PY+
Sbjct:  278 AGVLFPFYDPDTRMLYLAGKGDGNIRYYELSPHKPYI 314
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BLAST of mRNA_Ecto-sp13_S_contig79290.19217.1 vs. uniprot
Match: A0A1S3QPI0_SALSA (Coronin n=2 Tax=Euteleosteomorpha TaxID=1489388 RepID=A0A1S3QPI0_SALSA)

HSP 1 Score: 62.4 bits (150), Expect = 1.570e-10
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 SGVILPFYDDESSLLYLAGKGDGNIRYYEV---RPCLPYV 111
            SG++ PFYD ++ +LYLAGKGDGNIRYYE+   +PCL Y+
Sbjct:  199 SGLLFPFYDADTHMLYLAGKGDGNIRYYEITTEKPCLQYL 238
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig79290.19217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8C9TWD8_SCLFO2.990e-1170.27Coronin n=4 Tax=Scleropages formosus TaxID=113540 ... [more]
UPI00032914EF4.020e-1170.27coronin-2A n=1 Tax=Dasypus novemcinctus TaxID=9361... [more]
A0A498NFH4_LABRO5.530e-1167.57Coronin n=2 Tax=Labeo rohita TaxID=84645 RepID=A0A... [more]
A0A673FS89_9TELE5.540e-1167.57Coronin n=14 Tax=Cyprininae TaxID=2743694 RepID=A0... [more]
D8LU94_ECTSI5.580e-1196.55Coronin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU94... [more]
A0A672M6E9_SINGR5.580e-1167.57Coronin n=38 Tax=Cyprinoidei TaxID=30727 RepID=A0A... [more]
Q6P935_DANRE5.590e-1167.57Coronin n=13 Tax=Cyprinoidei TaxID=30727 RepID=Q6P... [more]
A0A3N0Y2F7_ANAGA7.630e-1172.97Coronin n=2 Tax=Xenocypridinae TaxID=2743747 RepID... [more]
G3Q435_GASAC1.430e-1064.86Coronin n=4 Tax=Gasterosteidae TaxID=69291 RepID=G... [more]
A0A1S3QPI0_SALSA1.570e-1062.50Coronin n=2 Tax=Euteleosteomorpha TaxID=1489388 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig79290contigEcto-sp13_S_contig79290:18..131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMammalia
Stop1
Start0
Seed ortholog score65.1
Seed ortholog evalue8.2e-09
Seed eggNOG ortholog10029.XP_007617664.1
Preferred nameCORO2A
Model size114
KEGG koko:K13887
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005903,GO:0006996,GO:0007010,GO:0007154,GO:0007165,GO:0008092,GO:0008150,GO:0009987,GO:0015629,GO:0016043,GO:0017053,GO:0023052,GO:0030029,GO:0030036,GO:0032991,GO:0035556,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044464,GO:0044877,GO:0050789,GO:0050794,GO:0050896,GO:0051015,GO:0051716,GO:0065007,GO:0071840,GO:0098862
Exons1
EggNOG free text desc.Belongs to the WD repeat coronin family
EggNOG OGs35NKC@314146,38DGC@33154,3BCGZ@33208,3CSIZ@33213,3JC0T@40674,48BCN@7711,48W8T@7742,4PT43@9989,COG1985@1,KOG0303@2759
Cds size114
COG Functional cat.Z
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464064.5854678-CDS-Ecto-sp13_S_contig79290:17..1311681464064.5854678-CDS-Ecto-sp13_S_contig79290:17..131Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig79290 18..131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig79290.19217.1prot_Ecto-sp13_S_contig79290.19217.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig79290 18..131 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig79290.19217.1

>prot_Ecto-sp13_S_contig79290.19217.1 ID=prot_Ecto-sp13_S_contig79290.19217.1|Name=mRNA_Ecto-sp13_S_contig79290.19217.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
SGVILPFYDDESSLLYLAGKGDGNIRYYEVRPCLPYV*
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mRNA from alignment at Ecto-sp13_S_contig79290:18..131+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig79290.19217.1 ID=mRNA_Ecto-sp13_S_contig79290.19217.1|Name=mRNA_Ecto-sp13_S_contig79290.19217.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79290:18..131+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGGCGTGATCCTTCCCTTCTACGATGACGAGAGCTCGCTGCTGTACTT
GGCGGGCAAGGGAGACGGCAACATTCGGTACTACGAGGTGCGTCCATGCC
TACCCTACGTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig79290:18..131+

>mRNA_Ecto-sp13_S_contig79290.19217.1 ID=mRNA_Ecto-sp13_S_contig79290.19217.1|Name=mRNA_Ecto-sp13_S_contig79290.19217.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79290:18..131+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGGCGTGATCCTTCCCTTCTACGATGACGAGAGCTCGCTGCTGTACTT
GGCGGGCAAGGGAGACGGCAACATTCGGTACTACGAGGTGCGTCCATGCC
TACCCTACGTTTAG
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