mRNA_Ecto-sp13_S_contig7929.19216.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7929.19216.1
Unique NamemRNA_Ecto-sp13_S_contig7929.19216.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7929.19216.1 vs. uniprot
Match: A0A6H5KFP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP7_9PHAE)

HSP 1 Score: 408 bits (1049), Expect = 2.640e-130
Identity = 214/219 (97.72%), Postives = 214/219 (97.72%), Query Frame = 1 
Query:  436 SLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQSLNHVRQMATFEPATSAAGGRSETIESIHETRLTGFCVHALVLGSLALLPQLGKIPMAVVSGIFLYLGRKVMSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAVKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG 1092
            SLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQSLNHVRQMATFEPA SAAGGRSETIESIHETRLTGFCVHALVLGSLALLPQLGKIPMAVVSGIFL LGRKVMSG AFLVRCKEVFVDRKLLRSESDIKKVGFGTA KYTAVQA MLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG
Sbjct:  187 SLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQSLNHVRQMATFEPAMSAAGGRSETIESIHETRLTGFCVHALVLGSLALLPQLGKIPMAVVSGIFLDLGRKVMSGTAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAGMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG 405
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7929.19216.1 vs. uniprot
Match: A0A835ZK65_9STRA (HCO3 transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK65_9STRA)

HSP 1 Score: 286 bits (731), Expect = 9.470e-84
Identity = 146/218 (66.97%), Postives = 175/218 (80.28%), Query Frame = 1 
Query:  436 SLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQSLNHVRQMATFEPATSAAGGRSETIESIHETRLTGFCVHALVLGSLALLPQLGKIPMAVVSGIFLYLGRKVMSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAVKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAV 1089
            SLFFLDQNIS+RVVNSP+H M K  AYHQD+LVLG+ITG LSV+GLPWQCAATVQSLNHVR M+T E   S  G + E I+ + ETR+TGF +HAL+L S+ +LP L +IPM VVSGIFLYLGRKVMSGN FL+R KE+  D+ LL+  S +KKVG+ TA+ YT+VQ  ML LLWTLKSF +TALFFPSVIGLL++VRL  LPK+F+   L ELD+AV
Sbjct:  196 SLFFLDQNISSRVVNSPKHNMKKPPAYHQDLLVLGLITGTLSVLGLPWQCAATVQSLNHVRAMSTAEIIDSPDGSKEEVIKDVVETRVTGFSIHALILASVGMLPVLKRIPMPVVSGIFLYLGRKVMSGNEFLLRIKELCADQSLLKPNSSVKKVGYKTALGYTSVQLGMLGLLWTLKSFRQTALFFPSVIGLLVLVRLAVLPKLFSKDALDELDSAV 413
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7929.19216.1 vs. uniprot
Match: A0A836CJA6_9STRA (Bicarbonate transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA6_9STRA)

HSP 1 Score: 261 bits (668), Expect = 1.400e-73
Identity = 136/218 (62.39%), Postives = 164/218 (75.23%), Query Frame = 1 
Query:  436 SLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQSLNHVRQMATFEPATSAAGGRSETIESIHETRLTGFCVHALVLGSLALLPQLGKIPMAVVSGIFLYLGRKVMSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAVKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAV 1089
            SLFFLDQNISARVVN P HK+ K  AYHQD+L LG+ITG+LSV+GLPWQCAATVQSLNHVR ++T +      G + E +  + ETR+TGF  HAL+L S+  LP L  IPM VVSG+FLYLGRKVM GN F  R  ++ +D KL+ S S +K VG GTA++YTAVQA ML LLWTLKSF +TAL FPSVIGLL+V+RL  LPK+F+ + L  LD  V
Sbjct:  297 SLFFLDQNISARVVNRPAHKLKKPPAYHQDLLTLGVITGVLSVLGLPWQCAATVQSLNHVRALSTTQVVDGPDGEKQEVVTEVCETRVTGFATHALILMSVGALPLLRLIPMPVVSGMFLYLGRKVMCGNGFFERITDLCMDPKLMGSGSVVKAVGRGTALRYTAVQALMLALLWTLKSFSQTALLFPSVIGLLVVMRLTVLPKLFSDRSLRLLDPPV 514
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7929.19216.1 vs. uniprot
Match: D7G110_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G110_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 2.670e-66
Identity = 133/158 (84.18%), Postives = 140/158 (88.61%), Query Frame = 1 
Query:  337 SWLLLLPPACTVTPLLRYPSTGTPLSSLLRAPQSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQSLNHVRQMATFEPATSAAGGRSETIESIHETRLTGFCVHALVLGSLALLPQLGKIPMAVVSGIFLYLGRK 810
            SW++   P  +VTP++R  +   P   L     SLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQSLNHVRQMATFEPATSAAGGRSETIES+HETRLTGFCVHALVLGSLALLPQLGKIPMAVVSGIFLYLGRK
Sbjct:  470 SWVV---PMFSVTPVVRL-ACAVPAMLLT----SLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQSLNHVRQMATFEPATSAAGGRSETIESMHETRLTGFCVHALVLGSLALLPQLGKIPMAVVSGIFLYLGRK 619
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7929.19216.1 vs. uniprot
Match: A0A7S3B5Q5_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B5Q5_9EUKA)

HSP 1 Score: 219 bits (557), Expect = 2.920e-61
Identity = 111/222 (50.00%), Postives = 153/222 (68.92%), Query Frame = 1 
Query:  439 LFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQSLNHVRQMATFEPATSAAGGRSETIESIHETRLTGFCVHALVLGSLALLPQLGKIPMAVVSGIFLYLGRKVMSGNAFLVRCKEVFVDRKLLRSESDIKK----VGFGTAVKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG 1092
            LFFLDQNI+ R VNSP HK+ KGAAYH D+  LG++TG  S++GLPW C+ATVQSLNH+R M+ +  +TS  G   E  E + ETR+TGF VHA +L S   +P L  +P+AVVSG+FLYLG+KVMSGN FL RCK VF++ + L +  + +K    +G     ++T VQ   L  LW LK    TAL FPS+I +L+++R+  +P+ F+P++L+ LD  +G
Sbjct:   32 LFFLDQNITVRTVNSPAHKLKKGAAYHLDLFALGLLTGAASLMGLPWMCSATVQSLNHIRAMSIYTKSTSPDGAVLELPEKVIETRVTGFGVHAAILASALFIPVLKSVPLAVVSGVFLYLGKKVMSGNQFLRRCKTVFLESESLDAGLEGEKEQLILGRMAVARFTGVQVLCLAALWALKLNPATALIFPSLIAVLMIIRVKLIPQHFSPRELTLLDTPIG 253
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7929.19216.1 vs. uniprot
Match: A0A0M0JHU2_9EUKA (HCO3_cotransp domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JHU2_9EUKA)

HSP 1 Score: 214 bits (544), Expect = 4.390e-59
Identity = 113/226 (50.00%), Postives = 153/226 (67.70%), Query Frame = 1 
Query:  439 LFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQSLNHVRQMATFEPATSAAGGRSETIESIHETRLTGFCVHALVLGSLALLPQLGKIPMAVVSGIFLYLGRKVMSGNAFLVRCKEVFVDRKLL--RSESDIKKVGFGTAV--KYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG*SSA 1104
            LFFLDQNI+ R VNSP HK+ KG AYH D+  LG++T   S+ GLPW C+ATVQSLNHVR M  +       G   E  + + ETR+TGF VHA VL S   +P L  +P+ VV+G+FLYLGRKVM+GN F+ RCK++F+D   L  ++E + ++V  G     ++TA+Q   LT+LW LK    TAL FPSVIG+L+++R   +PK+FT ++L  LD A+G +SA
Sbjct:   60 LFFLDQNITVRTVNSPSHKLRKGQAYHLDLCALGVLTLFASLTGLPWMCSATVQSLNHVRAMTVYRKIKPKDGPELEVPDYVVETRVTGFGVHAAVLCSALAIPTLSLVPLPVVAGVFLYLGRKVMTGNQFIRRCKQLFLDEDELCIKTEGEKEQVILGRKAVWRFTAMQVLCLTILWCLKLTPSTALIFPSVIGVLMILRSKLIPKLFTGRELMLLDTAIGATSA 285
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7929.19216.1 vs. uniprot
Match: A0A7S3XU58_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU58_HETAK)

HSP 1 Score: 214 bits (546), Expect = 5.230e-58
Identity = 113/219 (51.60%), Postives = 149/219 (68.04%), Query Frame = 1 
Query:  436 SLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQSLNHVRQMATFEPATSAAGGRSETIESIHETRLTGFCVHALVLGSLALLPQLGKIPMAVVSGIFLYLGRKVMSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAVKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG 1092
            +LF+LD NI+ R VN+PRH++ K  AYHQD+  L +IT  LS+ GLPW CAATVQSL HVR MA FE       G  E I    ETRLTG  VH  +  SL LLP + +IPM V+SGIFL+LGR++M+GN FL R K V+ ++  L  +  ++  G G A++YTAVQAA L  LW LK    TAL+FPSVIG+L+ +R+  LP +F+ ++L  LD++VG
Sbjct:  180 TLFYLDMNITVRTVNAPRHRLRKPVAYHQDLGALAVITLGLSLCGLPWMCAATVQSLAHVRSMAEFEE------GGGEVIARCRETRLTGLAVHGGIAASLLLLPVIAQIPMPVISGIFLFLGRRIMTGNGFLGRLKSVWAEKAKLPEDHPVRAAGRGAALRYTAVQAACLGGLWALKMNPATALYFPSVIGVLMGIRIWILPHLFSEEELKALDSSVG 392
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7929.19216.1 vs. uniprot
Match: A0A7S1GQR4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GQR4_CYCTE)

HSP 1 Score: 206 bits (524), Expect = 4.470e-57
Identity = 108/214 (50.47%), Postives = 148/214 (69.16%), Query Frame = 1 
Query:  436 SLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQSLNHVRQMATFEPATSAAGGRSETIESIHETRLTGFCVHALVLGSLALLPQLGKIPMAVVSGIFLYLGRKVMSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAVKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSEL 1077
            SLFF+DQNIS RVVN+P +K+ KGAAY+ DM+ LG+IT  LS+VGLPW C ATVQS+NHV+ M   E   +   G  E ++ + ETR TGF +H ++  +L LLP L  +P+ VVSG+FL+LGRK+MSGN+FL R ++ F +R  L     I+ +G   A  +T++Q A L  LW  K    TA+FFPSVIG+L+++R   LPK+FT ++L EL
Sbjct:   15 SLFFMDQNISVRVVNNPENKLKKGAAYNLDMVALGVITFALSIVGLPWMCGATVQSMNHVKAMT--ETKFNEQTGDLEIVD-VTETRTTGFVMHGMIAATLGLLPLLRSVPIPVVSGVFLFLGRKLMSGNSFLQRLRDTFAERTRLPEGHPIRTIGRKRAGLFTSIQLACLCGLWAFKQNTSTAIFFPSVIGMLMLIRAFMLPKIFTKRELFEL 225
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7929.19216.1 vs. uniprot
Match: A0A7S3XU83_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU83_HETAK)

HSP 1 Score: 214 bits (546), Expect = 1.380e-56
Identity = 113/219 (51.60%), Postives = 149/219 (68.04%), Query Frame = 1 
Query:  436 SLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQSLNHVRQMATFEPATSAAGGRSETIESIHETRLTGFCVHALVLGSLALLPQLGKIPMAVVSGIFLYLGRKVMSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAVKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG 1092
            +LF+LD NI+ R VN+PRH++ K  AYHQD+  L +IT  LS+ GLPW CAATVQSL HVR MA FE       G  E I    ETRLTG  VH  +  SL LLP + +IPM V+SGIFL+LGR++M+GN FL R K V+ ++  L  +  ++  G G A++YTAVQAA L  LW LK    TAL+FPSVIG+L+ +R+  LP +F+ ++L  LD++VG
Sbjct:  315 TLFYLDMNITVRTVNAPRHRLRKPVAYHQDLGALAVITLGLSLCGLPWMCAATVQSLAHVRSMAEFEE------GGGEVIARCRETRLTGLAVHGGIAASLLLLPVIAQIPMPVISGIFLFLGRRIMTGNGFLGRLKSVWAEKAKLPEDHPVRAAGRGAALRYTAVQAACLGGLWALKMNPATALYFPSVIGVLMGIRIWILPHLFSEEELKALDSSVG 527
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7929.19216.1 vs. uniprot
Match: W7TSJ0_9STRA (Anion exchanger family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSJ0_9STRA)

HSP 1 Score: 217 bits (552), Expect = 3.060e-56
Identity = 116/222 (52.25%), Postives = 152/222 (68.47%), Query Frame = 1 
Query:  439 LFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQSLNHVRQMATFEPA------TSAAGGRSETIESIH--ETRLTGFCVHALVLGSLALLPQLGKIPMAVVSGIFLYLGRKVMSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAVKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELD 1080
            LFFLD NIS RVVNSP +KM K  AYH D+LVLG I  L S++GLPW CAAT+QSLNHVR +  + PA      + + GG  E   + +  ETRLTG  +HA+VL S+ LLP L +IP  V+SGIFLYLGR VM+GN FL R K  F D+ +L ++S  K +G  T  KYT++Q   L +LW LKS   T +FFPSVIGLLI+ R++ +P++F+  +++ LD
Sbjct:  444 LFFLDHNISVRVVNSPDNKMKKSPAYHLDLLVLGSIVLLCSLLGLPWMCAATIQSLNHVRSVTDYVPAPGPVTVSESKGGPDEQQRTTYVMETRLTGLGIHAMVLCSIGLLPLLRRIPTPVISGIFLYLGRTVMTGNTFLQRIKGAFFDKSMLAADSPFKILGRATVNKYTSIQMGCLAVLWCLKSNPATGMFFPSVIGLLILTRILVIPRLFSKGEIAVLD 665
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7929.19216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFP7_9PHAE2.640e-13097.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZK65_9STRA9.470e-8466.97HCO3 transporter family-domain-containing protein ... [more]
A0A836CJA6_9STRA1.400e-7362.39Bicarbonate transporter n=1 Tax=Tribonema minus Ta... [more]
D7G110_ECTSI2.670e-6684.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3B5Q5_9EUKA2.920e-6150.00Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A0M0JHU2_9EUKA4.390e-5950.00HCO3_cotransp domain-containing protein n=1 Tax=Ch... [more]
A0A7S3XU58_HETAK5.230e-5851.60Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1GQR4_CYCTE4.470e-5750.47Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S3XU83_HETAK1.380e-5651.60Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TSJ0_9STRA3.060e-5652.25Anion exchanger family n=2 Tax=Monodopsidaceae Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7929contigEcto-sp13_S_contig7929:604..6303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score204.5
Seed ortholog evalue4.5e-50
Seed eggNOG ortholog2880.D7G110
Model size2933
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.inorganic anion exchanger activity
EggNOG OGsKOG1172@1,KOG1172@2759
Cds size600
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7929.19216.1prot_Ecto-sp13_S_contig7929.19216.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7929 1099..4465 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464064.4669688-UTR-Ecto-sp13_S_contig7929:603..10981681464064.4669688-UTR-Ecto-sp13_S_contig7929:603..1098Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7929 604..1098 +
1681464064.5386572-UTR-Ecto-sp13_S_contig7929:4465..63031681464064.5386572-UTR-Ecto-sp13_S_contig7929:4465..6303Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7929 4466..6303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464064.4779615-CDS-Ecto-sp13_S_contig7929:1098..12031681464064.4779615-CDS-Ecto-sp13_S_contig7929:1098..1203Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7929 1099..1203 +
1681464064.4898248-CDS-Ecto-sp13_S_contig7929:2709..29191681464064.4898248-CDS-Ecto-sp13_S_contig7929:2709..2919Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7929 2710..2919 +
1681464064.5071003-CDS-Ecto-sp13_S_contig7929:3283..34091681464064.5071003-CDS-Ecto-sp13_S_contig7929:3283..3409Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7929 3284..3409 +
1681464064.5171742-CDS-Ecto-sp13_S_contig7929:3692..38181681464064.5171742-CDS-Ecto-sp13_S_contig7929:3692..3818Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7929 3693..3818 +
1681464064.5277274-CDS-Ecto-sp13_S_contig7929:4432..44651681464064.5277274-CDS-Ecto-sp13_S_contig7929:4432..4465Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7929 4433..4465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7929.19216.1

>prot_Ecto-sp13_S_contig7929.19216.1 ID=prot_Ecto-sp13_S_contig7929.19216.1|Name=mRNA_Ecto-sp13_S_contig7929.19216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp
MTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQSLNHVRQMATFEPAT
SAAGGRSETIESIHETRLTGFCVHALVLGSLALLPQLGKIPMAVVSGIFL
YLGRKVMSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAVKYTAVQAAM
LTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG*
back to top

mRNA from alignment at Ecto-sp13_S_contig7929:604..6303+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7929.19216.1 ID=mRNA_Ecto-sp13_S_contig7929.19216.1|Name=mRNA_Ecto-sp13_S_contig7929.19216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5700bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7929:604..6303+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACTCCGCCATGCCCAGTAAGAACTCCACAATGGATTCCTCCAAAATGGT
GAATGATGGAACGGTAGATCTGGCGGTTTGTAGAGTACAATGTCAACAGT
GTGTTACGAAGAAGTTAGACCGCCGTTTTAGCCTCAGCACCCTTTCGGCC
ACGAAGAAGGTTAGCACGTTATGTACAGCCCGTCGCCTGCACCGGCCCGG
GTCGCCACCGCTCATGATACTCCTCCACTCTCGCCTTCCCTACTACTGGT
AGCCCTCTTGTCAATCGTGTCGCTGCTTTCGCCACGGTTTGCCTCCGCTC
TCGTCGTCCCCGCTACTTACTGGTACCCTGTCAATCTCATGGCTGCTGCT
GTTGCCACCCGCTTGTACTGTTACTCCGCTCCTGCGTTATCCCTCTACTG
GTACCCCTCTTTCATCGCTACTGCGCGCCCCCCAGTCTCTCTTTTTCTTG
GACCAGAACATCTCAGCTAGGGTGGTGAACTCCCCGCGGCACAAGATGAC
AAAGGGCGCCGCCTACCACCAGGACATGCTGGTGCTCGGGATAATCACCG
GCCTCCTGTCGGTGGTTGGGCTGCCGTGGCAGTGCGCCGCTACCGTGCAG
GTTCGTGGAAATTTCCCTTCACGAGCACGAGCGACGGCGTGCCGTTGTAC
ACGTGCCGGCTGCCGCGTTTTGATGTGTACTGCTGGCATCGCAAGGTTTT
CGGCATGTGGCGTCGCGTGGTATTCCGCCTTACAGGCCGTCATGTTTGTT
TGTTTCGCCAAGGAGATAGAAGAGAATGCGGAAGAGATATCTTTGTTGTG
TTTTTTTCAGACACAAAAAGGGAATCGTGCGTTCTCGCCAATGCCATTGT
CACACAAGAAAAAACATGTATCCGCCGAAGCTTGCCTCAATGGCTGGAAG
CAGTCTCTGAAGGAGCTCTATTTGCGCTAAATGGCGGATGTATGACCGGC
ATCGCATGAGTGGGGGAGGATCGGGCCCAGTAGCCGGAGGAGAGGTTACC
AGGACCCCACCACCCGGCATATCCCACACGGCCAAAACCAAATGTTGGCT
GAAGTGCTCAACCAGCGCAAGGTCGCCCTCGAACAGCAGCAGGTGGCAAA
CTCAGGTGTAGCGACGGAGGAGGAACTGTGAAAGAAATGCCAAGCCAACA
ATCGTGATCTTCACCAATCGCACCTGATATGTGCATTTAGTATTTGCCGT
AAATGTGAGGAGGGCGGCCAACCAGATGGCGGCGTGCCCGAACCCGTTGG
CGTCGTAAACACAGACGAACGTAGTGACGGTCACGACGTTCGTCTGTGTT
AACGATGCCCACGGGTTCGGGCACGCCGCCATCCGGTTGCTGCCCTCCCT
ACATTTACGGTGAATCCTATATGCGCACGTTAGATGAGATTGGTAAGGAT
CACGATTGTTGGCTTGGCTTTTCTTAGACAGTTCCTCACCCGTCGCTACA
CCAGCGTTCACCATCTGCTGCTGCTGGAAATAACAGAAACGATTGTTGTG
CCGGGCGTTCTCAGCATGTAGACAGACCCTGTTCGCCTCGAGGGACATCG
AAGACACTCACCGCCGCGCCACATCTCGGGCTCATCCCGCTCTCTGAATT
TTTTTAGTTGTGTTTCTTCGAAGTACATACTAGCAGGTAGATTTCATGTT
TAAAATGTCATCAGCATATACGTTGCGCAACATGTTTTCGTGCGATTTTC
ATCACCTCGATGCTGGACGCCATTGTATTCAAATATTTCGTAGGATAGTA
GGATCGCCAATTGATTCCTCGCTGTAAATCGCTCAACGCTGCCAGTCAAC
TTGCTTCCTCCCTCTGTAAGTCTCTCATCACCGCCAAACAACTTGCTTCC
TCTTTCCATGAAACGCTCAACACCGCGAACAAACGTTGTTCCTCTCTCCG
TGAATCGCTCAACACCGCGAACAAACGTTGTTCCTCTCTCCATGAGTCGC
TCAGCACCGCCAAACAACTTGCTTCCTTTCTCTATGAATCGCTCAACAAC
ACGAAACAATCGCGTTTCGTCTCTCTGTGAATCGCTCAAAACCGCCAAAC
AGCTTTCTTAAAAAATCTCCACATCGCCAAACAACGTGTCATCCCTCCCG
GTCCAGAGCCTTAACCATGTCCGGCAGATGGCTACCTTCGAGCCCGCGAC
GTCGGCGGCAGGAGGTCGCTCCGAGACCATCGAATCCATCCACGAGACGA
GGCTGACAGGGTTCTGCGTCCACGCCCTCGTGCTGGGCAGCCTGGCGCTG
CTGCCGCAGCTTGGGAAGATCCCGATGGCGGTGGTTTCTGGGATTTTCTT
GTACCTCGGCCGGAAGGTAGCTGGCCATCGCTGTCGTTGTCGTTGTCGTT
GGTGGTAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTGGTGGTGG
TGGTAGTGGTGGTGGTGGTAGTGGTGGTGGTGGTGGTGGTAGTGGTGGTG
GTGGTGGTGGTGTGTCGACGTCGCTAACCGGCTGACCAATGAAATATAAG
GGTCATTTCTTACAGATGGATACGAAAAAATAATATCTGTGTGAAAGAAT
GGCGCTTGCGTTTTATAATAGACGTTTAATACAGGTATGTGGACTCGGAA
TGACACGGATGCCTCCCGAGACCAATGCGTGACTTAACGCCCCCCCCCCC
CTCCCGGCACACGTTACGGCCGGCCGACAGGTTATGAGCGGGAACGCTTT
CTTGGTGAGGTGCAAGGAAGTCTTCGTTGACCGGAAGCTGTTGCGGAGCG
AGAGCGACATCAAGAAGGTCGGCTTCGGCACCGCAGTCAAATACACCGCC
GTCCAGGTACTTGCGATACGCGACGACGTTCTCTTTTTTTTTGTACCCCG
TTTTCTTGTTCTCGTCATGCCACATCCGTTCTATTATTGCCATTGGTCGT
CTTTGCTGTTCGCACCTCGGGGCCCTTGACGATGGTGGTCGACCCACTTC
TAAACATGAAACGTCGAGGTTTCCTCTGCCGCCGTACACTGGAAGGAAAC
TTTATCGGTCCCGATCAACCCAACCCTGTTTTTTTGGCTCCGTCCGTCCG
CATCCGCGCCTTTCGCGACATGACCATCACTGGTACCAGGCGGCCATGCT
TACCCTACTGTGGACGCTCAAGTCATTCGAGCGGACGGCGCTATTCTTCC
CGTCTGTGATCGGACTTCTCATCGTCGTCCGCCTCGTGGCGTTGCCTAAG
ATGTTCACCCCGAAGGTGCGGCCACCATAGCTACCCCTAACGCTGGACAG
TTTGCCCCGTCGTCAGCCCTTTCCATGACGACGAACCGATTTGTTTCTGT
TCATTGCAGGCGTTCTCGCAATACAGGTTGGACAGTGCTTTAACCTGCCA
TTTGATGCGGTCCCAAAAAGGTTTCGTGTTTTCTTCGGGGAGAAGAGTCT
ATTTGTCCCTTGGGGCGGTAGTGCCGGCAGTCTAGAGGAACGCGAGTTTG
CGAAGAGTGTTGTTCGGACACTGGCGGCGTTGCCTTCTGCACTGTTATTC
AAATTATATCCGAAAGGTAGTTCCGGGCCATTCCACTCCTAGACGTTCCC
TTGGGGTTGCATTGTGCTACTGCTTCAACGGCTTTCCTGACATCGAACAC
GCTGCTACCAGCACACGCTATTTTTATCGGTCAGGCACGGTTATGTCTTG
CCTACCCCCCAACCTCATCTGCGGGCGACGATCGGATTTCTTTTTGAGGG
GGGGTGTTGGGTCGTTTTCACCGATGACGGCCGAGCCCTACACGGACAAC
GGATGGCCCTCTGCCGCGCATGCATATCTGATGCTCTGTATCTTACGCGT
GCTCGCTGTCCACCCGCTGTACTCGCTAGGACTTGTCGGAGCTGGATGCC
GCAGTGGGGTGATCAAGTGCAACACTCGACGTCGCGGCGGGGATACGACA
AGCTTGTGGAGACTCCGTTCTCTTAACGGTTGTTTGCTCTCTTTGAAATT
GCCTGCGTGCCGAAATACTTCAGCACCTGTCGGCGGGGATGCAAGGCCAT
TCGTGAATGTTCCGGGAGTGCCGACGAGGCGTGTTTTGCATGAGAGGATG
TTTGGATATAGTCGTGGTTATGCATGGCTTCATTCTGGAGGTGGCATCCT
CTCACTCTGGCATCTTTCAGAGGTCTAGACGTAGCCCATTTGGGGGTTCG
GCGGAAGTCGGGGGTGGGGCATTCCGCATTGAGGTGGCCTTATCTGATAG
GCGTGTGGGGGAGGCAGTTGCTGTTGTACATGTATTCGCCGGTAGAAGTG
GTTGAGCGAAATGGCTCAGCAACAGCGTGTTGACAATAATTTTTACGATT
TGTATGGAAGGTCGACGACAATTTTGCTGAATGTCGTGTAATATTGCGGA
GACTGCATCTGGACTTGTGCTGACGGTATTGTAGCGGCATCGCCGTCGGC
AACAGCAACGGTTCTATCAGGACCGTGCTTCCAGCCGGGTCTACAGGGTG
GGCAGGTCGCCACTTTCATGGTGCCGCCCGTATTTGCTGTGCACTTGCCC
GTCTGATGGCGGTCGTTGTAGCTTCCCCCTGTTTGCGAAACAAGCGTAGA
CAAACCGGACGGGGGGGGGGTGGGCTCGTTCCTCTTCCGACGTGTCTGCA
GCAGCTGGTTCGCTGTTAAGTTCGTCTGCCGAAACAGTTTTGCCGTTCTT
TTTTGTCCTTGGTCTTTTTTTAGTGTCCGGCGTTGTTGTTAAGCGAACGT
GGGGCGGCCGTAACACCTACGGGAATTGCTGTGTAGATGCTGGTGGTGTA
CGGCAAGATAGAGCAGCAAACGTGTGAGCTGTTACCACTATTAGATATTA
CTTGCAGCAGGGTGGGAGGGCGTGTGCGTCGGAGTTCGAATCGAAACGCC
GACGCGCAAATCACGAACGAATGCCTCCCACCCCTCAAGCTATGTAAACG
TGCAGCCACCGGTGTTTGTCAATGATGGCATTGCCGCAACATCTGAAGGG
TTGTGGTGGTCTTCAGTTGTTTCGTCTGCTGTATTGAGACGGGCTGCGCA
GTCGGACAGCGTTGTTTCCTGCGAAAGGTGTTTCCGCCTTGCGGTGAAAA
GTGGTACCTTGCACCCACACGCACTCCCCACTTCTCCGAGATATCTTGAG
CGAATTCCATTGTCTCGAAGTGCGTTTGGTGTTGTTGCTGTAGTTTGTAG
TGATTTTTGTTTCAAGACTGCTTGCTGTGAGTGTAGTCTCCACAGGGTAT
TCACGCATGTCCGTTAGTGTTGAAAACGAACGGCGTGTCGCTGTGTGTCA
TCCAAAAAATGCATTGCGCTCTGGGTACAGTAGCCGCGCGCAATACGCCC
ACATTCAAGAACGTTGACATGTGCTATTGAATGCGGGTGGATATTTTTAG
TTCGTACGTGAATTTTATCGTTACCTTCGTTGTTCTCTCATGTGTCCTTG
CAATTCAGATAACCATTTTTTTTCCTTTTTTCTCGTTTCTTCCCGGCGTT
GGTGTCTCATTCGCTTCCTTTGGCGGCCATCCCTCCTGTGGGCTTGTTCA
CCGCGTTTCTTTTGCGCGAAAGGGTGTGCCTGTGTGCCTTCCGACCTTGC
GTTGATGATGATGAGCTTTTGGGGAGGGGTATCAAGTGGGGAAATAGTGC
CGTTTAGGACGGCGGGTAATTTTTTGTGACTTCACTTTTCTATCGAAGGA
TGCACATTTTTGTTTGTACTTTTCTGACTATCGAAGGTGACATGCTACGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7929:604..6303+

>mRNA_Ecto-sp13_S_contig7929.19216.1 ID=mRNA_Ecto-sp13_S_contig7929.19216.1|Name=mRNA_Ecto-sp13_S_contig7929.19216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7929:604..6303+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAAAGGGCGCCGCCTACCACCAGGACATGCTGGTGCTCGGGATAAT
CACCGGCCTCCTGTCGGTGGTTGGGCTGCCGTGGCAGTGCGCCGCTACCG
TGCAGAGCCTTAACCATGTCCGGCAGATGGCTACCTTCGAGCCCGCGACG
TCGGCGGCAGGAGGTCGCTCCGAGACCATCGAATCCATCCACGAGACGAG
GCTGACAGGGTTCTGCGTCCACGCCCTCGTGCTGGGCAGCCTGGCGCTGC
TGCCGCAGCTTGGGAAGATCCCGATGGCGGTGGTTTCTGGGATTTTCTTG
TACCTCGGCCGGAAGGTTATGAGCGGGAACGCTTTCTTGGTGAGGTGCAA
GGAAGTCTTCGTTGACCGGAAGCTGTTGCGGAGCGAGAGCGACATCAAGA
AGGTCGGCTTCGGCACCGCAGTCAAATACACCGCCGTCCAGGCGGCCATG
CTTACCCTACTGTGGACGCTCAAGTCATTCGAGCGGACGGCGCTATTCTT
CCCGTCTGTGATCGGACTTCTCATCGTCGTCCGCCTCGTGGCGTTGCCTA
AGATGTTCACCCCGAAGGACTTGTCGGAGCTGGATGCCGCAGTGGGGTGA
back to top