mRNA_Ecto-sp13_S_contig7928.19215.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig7928.19215.1
Unique Name	mRNA_Ecto-sp13_S_contig7928.19215.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig7928.19215.1 vs. uniprot
Match: D7FTM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTM8_ECTSI)

HSP 1 Score: 822 bits (2123), Expect = 1.330e-284
Identity = 461/493 (93.51%), Postives = 464/493 (94.12%), Query Frame = 1

Query:  394 RDIPSSRMASRSASLHRHHRREAAFASPAGIAEPIGRWAAAGCRRLASDMTQHGAAAVTAGVRSRATRFLLRGGLRDRSGDADG---SSTATASRRGLRMIAGGFSGDFMPQDESWKRGRKAPRQEHSERTSDGGXXXXDGTPLASSQSDIGGPSDASASEEDEVYSWAPKQNGQGSWDGGXXXXXXTLRRAEDTTPVWRVDLKRGVYTGDVKVKQPLGLDLTECSGGVCVSRVRAGSSAERQGVRAGDRIVATSATLGDVLWEKNTVDGILSAVGTRLVFSNTVTLRVERALDAQQLAAARFRESVTQTYEVTLQRPPGLILEQVWDPAGSGQADSVVVAGIVPGSPAESSGAVECGDKVVAVSSSIGNIMWPYRQLEGALSAIERHIGSTINIRFQRTVQMGAWKDPSNTDTDRTIDSTLEVFRERDVAVATSTGAGPLAAAXAAAKNAGFDVDGGRRVNRASAAVAVGTSAGAAGGRGAVGALSAQDDEA 1863
            RDIPSSRMASRSASLHRHHRREAAFASPAGIAEPIGRWAAAGCRRLASDMTQHGAAAVTAGVRSRATRFLLRGGLRDRSGDADG   SSTA AS R LRMIAGGFSGDFMPQDESWKRG KA RQEH ERT  G XXXXDGTPLASSQSDIG  SD +ASEEDEVYSWAPKQNGQGSWDG XXXXXX     EDT PVWRVDLKRGVYTGDVKVKQPLGLDL ECSGGVCVSRVRAG SAERQGVRAGDRIVATSATLGDVLWEKNTVDGILSAVGTRLVFSNTVTLRVERALDAQQLAAARFRESVTQTYEVTLQRPPGLILEQVWDPAGSGQADSVVVAGIVPGSPAESSGAVECGD VVAVSSSIGNIMWPYRQLEGALSAIERHIGSTINIRFQRTVQMGAWKDPSNTDTDRTIDSTL+VFRERDVA ATSTGAGPLAAA AAAKNAGFDVDGGRRV+R SAAVAVGTSAGAAGG GAVGALSAQDDEA
Sbjct:   81 RDIPSSRMASRSASLHRHHRREAAFASPAGIAEPIGRWAAAGCRRLASDMTQHGAAAVTAGVRSRATRFLLRGGLRDRSGDADGGDSSSTAAASSR-LRMIAGGFSGDFMPQDESWKRGSKAARQEHDERT--GXXXXXDGTPLASSQSDIGAHSDPAASEEDEVYSWAPKQNGQGSWDGXXXXXXXXXXXREDTAPVWRVDLKRGVYTGDVKVKQPLGLDLAECSGGVCVSRVRAGCSAERQGVRAGDRIVATSATLGDVLWEKNTVDGILSAVGTRLVFSNTVTLRVERALDAQQLAAARFRESVTQTYEVTLQRPPGLILEQVWDPAGSGQADSVVVAGIVPGSPAESSGAVECGDTVVAVSSSIGNIMWPYRQLEGALSAIERHIGSTINIRFQRTVQMGAWKDPSNTDTDRTIDSTLKVFRERDVAAATSTGAGPLAAAAAAAKNAGFDVDGGRRVSRGSAAVAVGTSAGAAGGGGAVGALSAQDDEA 570

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BLAST of mRNA_Ecto-sp13_S_contig7928.19215.1 vs. uniprot
Match: A0A8J2SI82_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SI82_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.400e-26
Identity = 91/222 (40.99%), Postives = 124/222 (55.86%), Query Frame = 1

Query:  988 DLKRGVYTGDVKVKQPLGLDLTECSGG----VCVSRVRAGSSAERQGVRAGDRIVATSATLGDVLWEKNTVDGILSAVGTRLVFSNT-VTLRVERALDAQQLAAA--RFRESVTQTYEVTLQRPPGLILEQVWDPAGSGQADSVVVAGIVPGSPAE-SSGAVECGDKVVAVSSSIGNIMWPYRQLEGALSAIERHIGSTINIRFQRTVQMGAWKDPSNTDTD 1629
            DL +  +  DV + +PLGL L E   G    V V  V     A   G RAGDR+VATSATLGD +W K+++ G++SAV +RL   N  V+LR+ER+LD  ++A A  R RESV + +EV LQ+P GL L+ V          +  VA I  G  AE S G V  GD+VV V S+ G  M+P    +  L+A      S I++R +R V++G W     +D D
Sbjct:   78 DLVKKTHRFDVSLTEPLGLTLGEAQAGKDTCVYVKTVDESGGAHAAGCRAGDRVVATSATLGDAMWPKSSIAGVVSAVRSRLQLGNQKVSLRIERSLDDDEVALAELRSRESVKERWEVELQKPLGLTLKNV--------DGTPTVAQIKKGGSAERSKGRVRIGDRVVGVESAFGGRMYPVTTTKEVLAAAALPTPS-ISLRLERDVRVGPWSGLLRSDGD 290

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BLAST of mRNA_Ecto-sp13_S_contig7928.19215.1 vs. uniprot
Match: A0A7S0V7W8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V7W8_9CRYP)

HSP 1 Score: 113 bits (282), Expect = 1.250e-24
Identity = 78/238 (32.77%), Postives = 121/238 (50.84%), Query Frame = 1

Query: 1030 QPLGLDLTECSG-GVCVSRVRAGSSAERQGVRAGDRIVATSATLGDVLWEKNTVDGILSAVGTRLVFSNTVTLRVER------------------------ALDAQQLAAARFRESVTQTYEVTL------------------QRPPGLILEQVWDPAGSGQADSVVVAGIVPGSPAESSGAVECGDKVVAVSSSIGNIMWPYRQLEGALSAIERHIGSTINIRFQRTVQMGAWKDPS 1614
            +PLG+ L E    GV V  V  GS+ +  GV+ GDRIVATS+T+G  +WEKNT++G+L+AV +  +   ++  R ER                        A+ + ++A  R + + T+T+E+TL                    P GL L Q  D     Q   V V  +  G  A  SG +  GD+V+A  + IG +MWP R LEG  +A+   +G ++ ++F+RTV +G+W++ S
Sbjct:    6 KPLGITLIEVPKFGVYVQAVTDGSARDA-GVKRGDRIVATSSTVGGQMWEKNTLEGVLAAVQSGTLLGKSMRFRFERDEVLTSIVGYEGSDEDMSRVDLQRAISSVEVARVRVQNTATETFELTLPIPGRDMRKLLQGDIFNGDLPYGLHLVQFPDDK---QGTRVEVFEVQEGGTAAQSGLLRKGDRVIAAQAGIGEMMWPKRTLEGIATAVRTRMGPSVRLKFERTVDLGSWEEES 239

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BLAST of mRNA_Ecto-sp13_S_contig7928.19215.1 vs. uniprot
Match: A0A7S3JYF5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYF5_9STRA)

HSP 1 Score: 118 bits (296), Expect = 5.230e-24
Identity = 77/240 (32.08%), Postives = 128/240 (53.33%), Query Frame = 1

Query:  988 DLKRGVYTGDVKVKQPLGLDLTECSGGVCVSRVRAGSSAERQGVRAGDRIVATSATLGDVLWEKNTVDGILSAVGTRLVFSNTVTLRVERALDAQQLAAARF--RESVTQTYEVTLQRPPGLILEQVWDPAGSGQADSVVVAGIVPGSPAESSGAVECGDKVVAVSSSIGNIMWPYRQLEGALSAIERHIGS------TINIRFQRTVQMGAWK---DPSNTDTDRTIDSTLEVFRERDV 1674
            DL R  +  DV++  PLGL L E   GV +S V  G  AE+ G+R GDR++ATSAT+GD +W K ++ G+ S+V +RL+   +V +R+ER LD  + A A    R  +T+T+ V L++P GL L        S +   V+V     G  A +  +++ GD ++A+ ++ G   W   Q       +ER I +      ++ ++  R +++G W    D + + T+ +I +  E    +DV
Sbjct:   73 DLSRKTHVFDVRLSAPLGLKLNEDELGVYISSVENGMGAEKAGLRVGDRVIATSATIGDAMWPKKSLAGVESSVRSRLMARGSVKVRIERNLDESEAAVAALVGRSLITETWNVQLKKPLGLTL--------SSRDGKVIVKATRKGGSAHAEPSIQVGDAIIAIGNNFGPKSWIPVQ-----GKVERVINAATGPSQSVRLKLSRQIRVGTWSSDYDFTTSSTNASIQAQAETRVAKDV 299

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BLAST of mRNA_Ecto-sp13_S_contig7928.19215.1 vs. uniprot
Match: A0A1Z9L3Z7_9SYNE (PDZ domain-containing protein n=1 Tax=Synechococcus sp. TMED187 TaxID=1986595 RepID=A0A1Z9L3Z7_9SYNE)

HSP 1 Score: 116 bits (290), Expect = 2.630e-23
Identity = 89/235 (37.87%), Postives = 123/235 (52.34%), Query Frame = 1

Query: 1000 GVYTGDVKVKQPLGLDLTECSG-GVCVSRVRAGSSAERQGVRAGDRIVATSATLGDVLWEKNTVDGILSAVGTRLVFSNTVTLRVERALDAQQLAAARFRESVTQTYEVTLQRPPGLILEQ-------------------------VWDPAGSGQ-ADS-----VVVAGIVPGSPAESSGAVECGDKVVAVSSSIGNIMWPYRQLEGALSAIERHIG--STINIRFQRTVQMGAW 1602
            GV   +V  K+PLGL L E  G GV V+ V  GS A + GVRAGD IVATSA+LG  +WEK T+ G+ SA+ TR+     + LR ERA    +   +R+ + V   YEV+L RP GL+L                           + D +  GQ AD        VA +V G  A +SGAV  GD VVA S+S+G+ MW    +EG  +AI   +    ++ +R  R++++G W
Sbjct:   41 GVEIFEVACKKPLGLQLREKPGRGVEVALVYEGSKAAQLGVRAGDLIVATSASLGSQMWEKKTLAGVESAIQTRVDGIVRLRLRRERA----ERWRSRWEDPVKYEYEVSLTRPIGLVLRPSSPSVALSAAATEAAAPEPVGAATAMGDSSAGGQSADERPPAGAEVAEVVEGGSAAASGAVRVGDVVVATSASVGDSMWRKSSVEGITAAISTRLSLSGSVRLRLSRSIRLGRW 271

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BLAST of mRNA_Ecto-sp13_S_contig7928.19215.1 vs. uniprot
Match: A0A7S3YIY2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YIY2_HETAK)

HSP 1 Score: 103 bits (257), Expect = 4.740e-21
Identity = 60/126 (47.62%), Postives = 82/126 (65.08%), Query Frame = 1

Query:  985 VDLKRGVYTGDVKVKQPLGLDLTECSG-GVCVSRVRAGSSAERQGVRAGDRIVATSATLGDVLWEKNTVDGILSAVGTRLVFSNTVTLRVERALDAQQLAAARFRESVTQTYEVTLQRPPGLILEQ 1359
            +DL R V   +V +  PLGL L++  G GV +  V AGS A   G+RAGDR+VATSAT G  LW K+T++G++SA+ TR       TLR+ER L A +L   ++R  VT+TYEV L +P G+ +EQ
Sbjct:  110 IDLDRQVRVFEVTMTPPLGLQLSQTKGSGVIIDDVLAGSVAATAGLRAGDRVVATSATFGPDLWPKSTMEGVVSALNTRFFLGLPCTLRLERPL-AAELQEYKYRNRVTETYEVALAKPLGVEIEQ 234

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BLAST of mRNA_Ecto-sp13_S_contig7928.19215.1 vs. uniprot
Match: A0A7S4JAT6_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JAT6_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.790e-20
Identity = 70/184 (38.04%), Postives = 108/184 (58.70%), Query Frame = 1

Query: 1075 VSRVRAGSSAERQGVRAGDRIVATSATLGDVLWEKNTVDGILSAVGTRLVFSNTVTLRVERALDAQQLAAARFRESVTQTYEVTLQRPPGLILEQVWDPAGSGQADSVVVAGIVPGSPAESSGAVECGDKVVAVSSSIGNIMWPYRQLEGALSAIERHI-GSTINIRFQRTVQMGAWKDPSNTD 1623
            +S V  G  A   GVR GD ++ATSATLGD LW K+T+DG+ SA+ +R + S+T  +++ R+  +  ++A      V + +E+ L RP G+   +V D   SG    VVVA +   + +    AV+ GD+VVAV SS+GN MWP   +EG +SA    + G  + ++F+R V +G + + S  D
Sbjct:    3 ISSVVRGGLAWEAGVRVGDEVMATSATLGDKLWPKSTLDGVRSALSSRKITSSTFMVQLRRSGASACVSAPE----VVEEFELQLTRPMGI---EVNDDDVSG---FVVVADLAEDAQSALKDAVKVGDRVVAVDSSLGNRMWPVSNVEGLVSACTSRLPGQPVRLKFERVVDVGEFSNGSGVD 176

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BLAST of mRNA_Ecto-sp13_S_contig7928.19215.1 vs. uniprot
Match: A0A7S2V5A3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5A3_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.330e-20
Identity = 55/127 (43.31%), Postives = 79/127 (62.20%), Query Frame = 1

Query:  988 DLKRGVYTGDVKVKQPLGLDLTECSG---GVCVSRVRAGSSAERQGVRAGDRIVATSATLGDVLWEKNTVDGILSAVGTRLVFSNTVTLRVERALDAQQLAAARFRESVTQTYEVTLQRPPGLILEQ 1359
            DL R V + +V + +P+GL+L +  G   GV V  V + S  E+ GV  GDR+VATSAT+GD LW+KNT++G++SA+ TR       TLR+ER +  + L   R +  V ++Y V L +P GL L Q
Sbjct:   85 DLDRQVSSFEVTLSEPMGLNLVQLEGPAMGVVVDSVESNSLGEKAGVVKGDRVVATSATMGDQLWKKNTLEGVMSALNTRFFMGQAATLRLERRIAGEALVGFRSKTEVKESYIVALAKPLGLELIQ 211

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BLAST of mRNA_Ecto-sp13_S_contig7928.19215.1 vs. uniprot
Match: A0A836CKM0_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKM0_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.970e-19
Identity = 58/127 (45.67%), Postives = 83/127 (65.35%), Query Frame = 1

Query: 1000 GVYTGDVKVKQPLGLDLTECSG-GVCVSRVRAGSSAERQGVRAGDRIVATSATLGDVLWEKNTVDGILSAVGTRLVFSNTVTLRVERALDAQQLAAARFRESVTQTYEVTLQRPPGL--ILEQVWDP 1371
            G YT  V V++PLGL+L E  G GV +S V AGS+AE+ GV  GDR+VATSATLG  +WEKNT+DG++SA+ +RL+ S+ V +++ER LD  + A+   ++   ++        P L  +LE V  P
Sbjct:   46 GSYTYKVSVRKPLGLELMESEGKGVLISNVWAGSNAEKAGVMKGDRVVATSATLGGAMWEKNTIDGVISAITSRLILSDEVVIQLERYLDGHKTASVPPKQEAAESLAQPEHEEPTLAQLLEAVAAP 172

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BLAST of mRNA_Ecto-sp13_S_contig7928.19215.1 vs. uniprot
Match: A0A7S3VBB5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VBB5_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.180e-17
Identity = 70/220 (31.82%), Postives = 120/220 (54.55%), Query Frame = 1

Query:  961 EDTTPVWRVDLKRGVYTGD--VKVKQPLGLDLTECSGGVCVSRVRAGSSAERQGVRAGDRIVATSATLGDVLWEKNTVDGILSAVGTRLVFSNTVTLRVERA----LDAQQLAAARFRESVTQTYEVTLQRPPGLILEQVWDPAGSGQADSVVVAGIVPGSPAESSGAVECGDKVVAVSSSIGNIMWPYRQLEGALSAIERHI-GSTINIRFQRTVQMGA 1599
            E+ T + + +   G   GD  ++V    GL   E S G+ VS V  G  A   GVRAGD ++ATSAT+GD +W K++++GI SA+ +R V S+++ +  +RA     DA+          + Q +E++L RP G+ +E   D         V ++G     P   +  +  GD+++AV S++G  MWP   ++G +S++   + G T+ ++F+R V+ G+
Sbjct:  152 EEVTRLKKRECTFGEDGGDSSIQVLDEKGL---ETSSGIVVSSVERGGLAWDLGVRAGDFVIATSATVGDKMWPKSSLEGIRSAISSRKVISSSMQVEFQRAGTFVPDAE----------LVQEFELSLSRPMGIHIEDTHD-------GYVQISGFTEDVPDFVTHNLRVGDRIIAVDSTLGK-MWPVSTVDGVVSSVTTRLPGQTVQLKFERVVEDGS 350

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig7928.19215.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig7928.19215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FTM8_ECTSI	1.330e-284	93.51	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A8J2SI82_9STRA	1.400e-26	40.99	Hypothetical protein n=3 Tax=Pelagomonas calceolat...	[more]
A0A7S0V7W8_9CRYP	1.250e-24	32.77	Hypothetical protein (Fragment) n=1 Tax=Hemiselmis...	[more]
A0A7S3JYF5_9STRA	5.230e-24	32.08	Hypothetical protein n=1 Tax=Aureoumbra lagunensis...	[more]
A0A1Z9L3Z7_9SYNE	2.630e-23	37.87	PDZ domain-containing protein n=1 Tax=Synechococcu...	[more]
A0A7S3YIY2_HETAK	4.740e-21	47.62	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A7S4JAT6_9STRA	1.790e-20	38.04	Hypothetical protein n=2 Tax=Odontella aurita TaxI...	[more]
A0A7S2V5A3_9STRA	3.330e-20	43.31	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
A0A836CKM0_9STRA	2.970e-19	45.67	PDZ domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A7S3VBB5_9STRA	2.180e-17	31.82	Hypothetical protein n=1 Tax=Chaetoceros debilis T...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig7928	contig	Ecto-sp13_S_contig7928:3..4882 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	829.7
Seed ortholog evalue	8.9e-238
Seed eggNOG ortholog	2880.D7FTM8
Model size	1863
Hectar predicted targeting category	other localisation
Exons	6
EggNOG free text desc.	endonuclease activity
EggNOG OGs	KOG4197@1,KOG4197@2759
Ec32 ortholog description	Pentatricopeptide repeat
Ec32 ortholog	Ec-06_008880.1
Cds size	1863
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig7928.19215.1	prot_Ecto-sp13_S_contig7928.19215.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig7928 3..4882 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464064.3938787-CDS-Ecto-sp13_S_contig7928:2..245	1681464064.3938787-CDS-Ecto-sp13_S_contig7928:2..245	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7928 3..245 -
1681464064.40446-CDS-Ecto-sp13_S_contig7928:553..662	1681464064.40446-CDS-Ecto-sp13_S_contig7928:553..662	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7928 554..662 -
1681464064.413156-CDS-Ecto-sp13_S_contig7928:1525..1747	1681464064.413156-CDS-Ecto-sp13_S_contig7928:1525..1747	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7928 1526..1747 -
1681464064.4214792-CDS-Ecto-sp13_S_contig7928:2146..2314	1681464064.4214792-CDS-Ecto-sp13_S_contig7928:2146..2314	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7928 2147..2314 -
1681464064.4324148-CDS-Ecto-sp13_S_contig7928:2651..2740	1681464064.4324148-CDS-Ecto-sp13_S_contig7928:2651..2740	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7928 2652..2740 -
1681464064.4410124-CDS-Ecto-sp13_S_contig7928:3850..4882	1681464064.4410124-CDS-Ecto-sp13_S_contig7928:3850..4882	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7928 3851..4882 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig7928:3..4882-
coding sequence from alignment at Ecto-sp13_S_contig7928:3..4882-

protein sequence of mRNA_Ecto-sp13_S_contig7928.19215.1

>prot_Ecto-sp13_S_contig7928.19215.1 ID=prot_Ecto-sp13_S_contig7928.19215.1|Name=mRNA_Ecto-sp13_S_contig7928.19215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=621bp
QEVCSSRWKQPSRHFSEEEHMHEQHHIRSTSGTCVADAAPYSCSCSSADP
MMSATSPVGCCCCYPTKVERRRRSRRRDQHELQREKSSSASRSVTRGSRR
RRQGAGLATTVLFASSTAAASAAAATAASSSRDIPSSRMASRSASLHRHH
RREAAFASPAGIAEPIGRWAAAGCRRLASDMTQHGAAAVTAGVRSRATRF
LLRGGLRDRSGDADGSSTATASRRGLRMIAGGFSGDFMPQDESWKRGRKA
PRQEHSERTSDGGGGGGDGTPLASSQSDIGGPSDASASEEDEVYSWAPKQ
NGQGSWDGGGGAAAATLRRAEDTTPVWRVDLKRGVYTGDVKVKQPLGLDL
TECSGGVCVSRVRAGSSAERQGVRAGDRIVATSATLGDVLWEKNTVDGIL
SAVGTRLVFSNTVTLRVERALDAQQLAAARFRESVTQTYEVTLQRPPGLI
LEQVWDPAGSGQADSVVVAGIVPGSPAESSGAVECGDKVVAVSSSIGNIM
WPYRQLEGALSAIERHIGSTINIRFQRTVQMGAWKDPSNTDTDRTIDSTL
EVFRERDVAVATSTGAGPLAAAAAAAKNAGFDVDGGRRVNRASAAVAVGT
SAGAAGGRGAVGALSAQDDEA

mRNA from alignment at Ecto-sp13_S_contig7928:3..4882-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig7928.19215.1 ID=mRNA_Ecto-sp13_S_contig7928.19215.1|Name=mRNA_Ecto-sp13_S_contig7928.19215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4880bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7928:3..4882- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAAGTTTGCTCCTCCCGGTGGAAGCAGCCCAGTAGACATTTCAGCGA
AGAAGAGCACATGCATGAGCAGCATCATATACGCTCAACATCAGGTACTT
GTGTTGCAGATGCGGCGCCCTATTCCTGCTCCTGCAGTTCAGCAGACCCG
ATGATGAGCGCAACAAGCCCAGTAGGCTGCTGCTGCTGCTACCCCACGAA
GGTAGAGCGGCGACGACGTTCTCGACGACGAGACCAGCATGAGTTGCAGC
GGGAGAAGTCCAGCAGCGCCAGCAGGAGCGTCACGCGAGGGAGTAGGCGA
CGCCGGCAAGGTGCGGGCCTGGCGACGACCGTGCTGTTCGCCTCGTCGAC
GGCAGCTGCCTCCGCCGCTGCTGCTACCGCTGCCTCGTCCTCTCGGGATA
TCCCGTCCTCACGCATGGCAAGCAGGAGCGCGTCGTTGCATCGTCATCAC
CGAAGAGAAGCGGCCTTCGCTTCGCCGGCAGGCATCGCTGAGCCCATCGG
CCGCTGGGCCGCAGCTGGCTGCCGCCGCCTGGCCTCGGACATGACACAGC
ACGGCGCCGCCGCCGTGACGGCCGGGGTGAGGAGCCGGGCGACCAGGTTT
CTTCTCCGCGGGGGCTTGCGCGATCGGAGCGGTGATGCCGATGGCAGCAG
CACTGCGACAGCTAGCAGAAGAGGGCTGCGAATGATCGCTGGAGGCTTTT
CGGGTGATTTCATGCCGCAGGACGAGTCCTGGAAGCGGGGGAGGAAGGCA
CCTCGGCAGGAACACAGCGAGAGAACGAGCGACGGCGGCGGCGGCGGCGG
CGACGGCACGCCGCTGGCGTCTTCGCAGTCCGACATCGGGGGCCCTTCCG
ATGCATCCGCGTCCGAAGAGGACGAGGTCTACTCGTGGGCGCCCAAGCAG
AACGGGCAGGGGTCATGGGACGGCGGCGGGGGTGCTGCCGCTGCCACCCT
CCGCCGCGCGGAGGACACCACCCCAGTCTGGCGCGTCGACCTCAAGCGCG
GCGTTTACACCGGAGACGTCAAGGTCAAGCAGGTTAGTGTGTGCGGTGTG
TTTTGCACGGTTTTCCTTTTGCCGTCTTGGCAATGGAAGGGTCCCGCACT
ATGTGTGCTGAAAGGTAGCGGTGCGCTCCGCGGGGGTGAGCTTTGTTCCG
TGGTGCTGCTGCTGCCGGATGCACGATGAGTCACCCGAGGAAGCGGCAAG
ACTCGTGTCGAAACGGTCAGATGGTGGAGAAAAAAAATGTACTGCTGAAC
GCCTGTAACGCATGTCGCAACGCCCAGACGGTCTCCACGGCGGTAACCTC
GGGAACCTTCTATGAGTAGCCAGGTTGGCGTTCGACTACCTCTCTCGGGA
TCGAGAACAATCGTACCGATATCGTCAGCGTGCATGTTCTTCGACGTGAC
CTTTCACGACAGATGACGTTGACGACCGTGGCAAGAGGCGGAGCGCAAAA
AAAAAAAGAAAGAACATCTGTTGTGTGACCTTCCTCCTTCGTAACCCCGG
CTGACACGTCAAACATGCCGCATGGGTTGGTGTACACCGAACGGCGAAGT
TGTAGACGGCCCAGGAATAGATGGGACGAACATACACAGCAGCACTGACG
AAGGCAATCGTCACGTTGAGTCGTACTCGCTTCCGCCAGATTTGCCTCTT
GTCAGTTTTCAAAAGTACTATCCTCTTGTCGAAAGGGATGGGAGGTTTGT
CGAATGGGACGGGAGGTTTGACGTATTCTGCTGGTTCATGCCAGGTGCCA
CGGCTTGCCACAATCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGATCCCCT
TGATTCCTGCCTGCGCGTGCCTGGAACTGTATCGCCGATCAGCCGCTAGG
TCTTGACCTGACGGAGTGCAGCGGGGGTGTCTGCGTGTCCAGGGTCCGAG
CGGGGTCCAGTGCGGAGCGACAGGGGGTCCGGTACGTCTGATGTATCCGC
CAGGACCCTACATGGGATGTATGGAGAAATCTTGCGCAAGGTTGTCATCA
TGGATACATTTTCGCGACGCTTTTAGTGTGGTTTGTGCCTCGATGTTTTT
TTTTACTTTTCACGGCAAGAATGACTTGTCGGGGGGGGATGGGGGGTGTT
CGCGCCGCGTGTTTCAGCGGTTTTTTTCTTTCAATTTATTTGGGGTTCGA
ATACTTCGCCGGTTTGCATCGTTCGAGACCCGTTGTTTTTGCCTCGTCTT
CGTGCATCGACTGTTGAACGTTCGAGTCCGTTCGTCCTTTTTGTTTTTCT
TGCACTACTGCTGTTCAGAGCTGGCGACCGGATCGTGGCGACTAGCGCCA
CGCTTGGGGACGTCCTGTGGGAGAAGAACACGGTGGACGGGATACTCTCG
GCAGTAGGCACCCGCCTCGTGTTCTCCAACACCGTCACGCTGCGGGTCGA
GAGAGCGCTTGACGCACAGCAACTGGCCGCGGCGAGGTGATATTTTACTT
AATGTTCTGTCTTTCGTTTGTCGTGGGAGGCGTTGTGAGAAGCCAGAGAG
AATCTACCGCGGGAAGGGGTTGACATGCGAGGACAGGCTCGACGGAATGT
CGCTTGAGCAGGCTTCAGGCGGCGGCTTGACTGCCCTCCCCGGGGCTGAC
GCTGCTGTTGCGCGCTTCTGATACAACCACTGGGGCAGTCTTGCTGTTGT
TTTCGTCCGTTGTTTTCCTCTTGCAAGCTGGGTACGATCATGTGTGACAC
TGCCGGCTGCAGACCTGCCCAGTATGTACGCGAGAAACCCCAACCATCAC
CCCTCTCCCCTGCGCCACGTGAGCTGAACTTCACCCACTCATGGCACCCC
TCTTTTCCCCTCCCCAAAAAATTCCCGAGAAACAGGTTCCGGGAGTCGGT
GACCCAGACGTACGAGGTCACACTCCAGAGGCCCCCCGGGCTTATCCTGG
AGCAGGTGTGGGACCCTGCCGGCAGCGGGCAGGCGGACAGCGTGGTCGTG
GCGGGCATCGTCCCGGGCAGCCCCGCAGAATCGAGCGGTGCCGTGGAATG
CGGGGACAAGGTGGTGGCCGTGAGCAGTTCCATCGGGAACATCATGTGGC
CCTACAGGTACAGTCCGGGCAGTGTGCTAGTATTGCTGTTGTTTTTGTTT
TTTTCGTGGCGCAGGTGTGTAGTTTTGCAGCGGGACGGCGAGTGTGAACA
AAAGGTGGGTGGGAACGTCCTCGTTTTTTTTGTGGTTGGTGTGGTTTTGG
GGTGTTTTGTTTTTTTGGGGGGGTGTGGGGGGGTGTTTTGGGGAGGGGTG
GGTGTGTCTTGGCCCTTTTTTTTTTTTCTGTTGTTGCACGTGTTAAGGCT
TGCGGCAGGAGCGAGGACTGGCTTATCTGCACCGTAGCACTCAAACGATT
CCGTGATTGGCATGGAAGCATGCTTTGCCGGGTGTGGAGAACAAGAGGGA
AAAGTAATCTTGTCGGACAAAAGGTCATTCGTATCCTCGTGTAGACGTCG
ATGCCAAACGTCTCTCTTGCCCAAGAGCGGTCTCCCTGAAGCCAATTTTG
AGCACTGTACCAGCTCAAGAAACCAGGAGGGCGTGCACAGTGAGTGTGTA
TCGTGCGGAGAGTGGTTTGGTCTCCCTGAAGCCAATTTTGAGCACTGTAC
CAGCTCAAGAAACCAGGAGGGCGTGCACAGTGAGTGTGTATCGTGCGGAG
AGTGGTTTTCTCGAGCATGGGCTGTGTGTTTCGCAGTTTCAAGTGTAGCA
CACCTTTTACCCCGCACAAGCAATGCTGCAACACAAGAAGGGCCTGATGA
TGATGTGTTGTGCTGTTGAACCCTGGCCTGCAGGAAAAAGCGAAGAATGC
TTGCGACCCTTCCCCCCTCCCCGGATTACCCAGTTCCGTGACCACCGATG
TATATATTTTTGTTGTCGTTTTATTACCAGCCGTAATGTTGACACGCCCT
TTCAAACTGCGCTCCGGCAGGCAACTGGAGGGTGCACTGAGCGCGATCGA
GCGGCACATCGGGAGCACCATTAACATTCGGTTTCAGCGAACTGTCCAGA
TGGGAGCGTGGAAGGATCCTTCCAACACGGTGCGACATTCACTTTGTCTG
CGCGTTGTAAAAAAAGGAAAATGGCCGTGCTATCTCTTTCCGTGGCTTTG
GTGTCTGTGGGGTTCCCTTTCCTATCTCCCGTTCGCTGTCAGCCTCGCCG
AAGTGTGCCCCAGCTCTCTCTGCTTGTTGCAGGGACTCACACCCCTTGTT
ACAGGTCGAGGGACAGCTGTTTGTCCGATTTCAAGAAATCTTAATATTCC
TCAAGCTTGTGTGCAACGATCTCCTATCGATCCCTTCCCCCGGCCCCCAA
CTGCCTTGCAAAACATCCTCCTCCCCCCCCCCCGTAGGACACGGACAGAA
CGATAGACAGCACCCTCGAGGTCTTTCGCGAGAGGGACGTCGCCGTGGCA
ACCTCTACCGGCGCCGGCCCCCTCGCCGCCGCCGCCGCCGCCGCGAAGAA
CGCGGGTTTCGACGTCGACGGAGGCAGGCGGGTAAACCGGGCCTCCGCCG
CCGTCGCCGTGGGTACGTCCGCGGGTGCGGCGGGCGGCCGCGGGGCGGTG
GGCGCGCTGAGCGCCCAGGATGACGAGGCT

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7928:3..4882-

>mRNA_Ecto-sp13_S_contig7928.19215.1 ID=mRNA_Ecto-sp13_S_contig7928.19215.1|Name=mRNA_Ecto-sp13_S_contig7928.19215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1863bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7928:3..4882- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAAGTTTGCTCCTCCCGGTGGAAGCAGCCCAGTAGACATTTCAGCGA
AGAAGAGCACATGCATGAGCAGCATCATATACGCTCAACATCAGGTACTT
GTGTTGCAGATGCGGCGCCCTATTCCTGCTCCTGCAGTTCAGCAGACCCG
ATGATGAGCGCAACAAGCCCAGTAGGCTGCTGCTGCTGCTACCCCACGAA
GGTAGAGCGGCGACGACGTTCTCGACGACGAGACCAGCATGAGTTGCAGC
GGGAGAAGTCCAGCAGCGCCAGCAGGAGCGTCACGCGAGGGAGTAGGCGA
CGCCGGCAAGGTGCGGGCCTGGCGACGACCGTGCTGTTCGCCTCGTCGAC
GGCAGCTGCCTCCGCCGCTGCTGCTACCGCTGCCTCGTCCTCTCGGGATA
TCCCGTCCTCACGCATGGCAAGCAGGAGCGCGTCGTTGCATCGTCATCAC
CGAAGAGAAGCGGCCTTCGCTTCGCCGGCAGGCATCGCTGAGCCCATCGG
CCGCTGGGCCGCAGCTGGCTGCCGCCGCCTGGCCTCGGACATGACACAGC
ACGGCGCCGCCGCCGTGACGGCCGGGGTGAGGAGCCGGGCGACCAGGTTT
CTTCTCCGCGGGGGCTTGCGCGATCGGAGCGGTGATGCCGATGGCAGCAG
CACTGCGACAGCTAGCAGAAGAGGGCTGCGAATGATCGCTGGAGGCTTTT
CGGGTGATTTCATGCCGCAGGACGAGTCCTGGAAGCGGGGGAGGAAGGCA
CCTCGGCAGGAACACAGCGAGAGAACGAGCGACGGCGGCGGCGGCGGCGG
CGACGGCACGCCGCTGGCGTCTTCGCAGTCCGACATCGGGGGCCCTTCCG
ATGCATCCGCGTCCGAAGAGGACGAGGTCTACTCGTGGGCGCCCAAGCAG
AACGGGCAGGGGTCATGGGACGGCGGCGGGGGTGCTGCCGCTGCCACCCT
CCGCCGCGCGGAGGACACCACCCCAGTCTGGCGCGTCGACCTCAAGCGCG
GCGTTTACACCGGAGACGTCAAGGTCAAGCAGCCGCTAGGTCTTGACCTG
ACGGAGTGCAGCGGGGGTGTCTGCGTGTCCAGGGTCCGAGCGGGGTCCAG
TGCGGAGCGACAGGGGGTCCGAGCTGGCGACCGGATCGTGGCGACTAGCG
CCACGCTTGGGGACGTCCTGTGGGAGAAGAACACGGTGGACGGGATACTC
TCGGCAGTAGGCACCCGCCTCGTGTTCTCCAACACCGTCACGCTGCGGGT
CGAGAGAGCGCTTGACGCACAGCAACTGGCCGCGGCGAGGTTCCGGGAGT
CGGTGACCCAGACGTACGAGGTCACACTCCAGAGGCCCCCCGGGCTTATC
CTGGAGCAGGTGTGGGACCCTGCCGGCAGCGGGCAGGCGGACAGCGTGGT
CGTGGCGGGCATCGTCCCGGGCAGCCCCGCAGAATCGAGCGGTGCCGTGG
AATGCGGGGACAAGGTGGTGGCCGTGAGCAGTTCCATCGGGAACATCATG
TGGCCCTACAGGCAACTGGAGGGTGCACTGAGCGCGATCGAGCGGCACAT
CGGGAGCACCATTAACATTCGGTTTCAGCGAACTGTCCAGATGGGAGCGT
GGAAGGATCCTTCCAACACGGACACGGACAGAACGATAGACAGCACCCTC
GAGGTCTTTCGCGAGAGGGACGTCGCCGTGGCAACCTCTACCGGCGCCGG
CCCCCTCGCCGCCGCCGCCGCCGCCGCGAAGAACGCGGGTTTCGACGTCG
ACGGAGGCAGGCGGGTAAACCGGGCCTCCGCCGCCGTCGCCGTGGGTACG
TCCGCGGGTGCGGCGGGCGGCCGCGGGGCGGTGGGCGCGCTGAGCGCCCA
GGATGACGAGGCT