mRNA_Ecto-sp13_S_contig7926.19212.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7926.19212.1
Unique NamemRNA_Ecto-sp13_S_contig7926.19212.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7926.19212.1 vs. uniprot
Match: D7FN40_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN40_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 5.010e-34
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 MAEQTFDKKRRLDEDGNASAFAENTAESRKEKLETWLKPLDNEQLVKLLLDMYVMFHANAVVVCAC 198
            MAEQTFDKKRRLDEDGNASAFAENTAESRKEKLETWLKPLDNEQLVKLLLDMYVMF A+ V+VCAC
Sbjct:    1 MAEQTFDKKRRLDEDGNASAFAENTAESRKEKLETWLKPLDNEQLVKLLLDMYVMFCASCVLVCAC 66
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BLAST of mRNA_Ecto-sp13_S_contig7926.19212.1 vs. uniprot
Match: D7FN41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN41_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.710e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MAEQTFDKKRRLDEDGNASAFAENTAESRKEKLETWLKPLDNEQLVKLLLD 153
            MAEQTFDKKRRLDEDGNASAFAENTAESRKEKLETWLKPLDNEQLVKLLLD
Sbjct:   90 MAEQTFDKKRRLDEDGNASAFAENTAESRKEKLETWLKPLDNEQLVKLLLD 140
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BLAST of mRNA_Ecto-sp13_S_contig7926.19212.1 vs. uniprot
Match: A0A6H5KMW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMW4_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.210e-13
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 2 
Query:   38 MRTETPRRSPKTQQKVARRSWRPGSSPWTTSSWSSSSLTCT 160
            M+TETPRRSP TQQ+VARRSWRPGSSP TTSSWSSSSLTCT
Sbjct:    1 MKTETPRRSPTTQQRVARRSWRPGSSPLTTSSWSSSSLTCT 41
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7926.19212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FN40_ECTSI5.010e-3493.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FN41_ECTSI1.710e-22100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMW4_9PHAE4.210e-1390.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7926contigEcto-sp13_S_contig7926:1281..1481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size201
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_008300.1
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464064.0943656-CDS-Ecto-sp13_S_contig7926:1280..14811681464064.0943656-CDS-Ecto-sp13_S_contig7926:1280..1481Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7926 1281..1481 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7926.19212.1prot_Ecto-sp13_S_contig7926.19212.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7926 1281..1481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7926.19212.1

>prot_Ecto-sp13_S_contig7926.19212.1 ID=prot_Ecto-sp13_S_contig7926.19212.1|Name=mRNA_Ecto-sp13_S_contig7926.19212.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
MAEQTFDKKRRLDEDGNASAFAENTAESRKEKLETWLKPLDNEQLVKLLL
DMYVMFHANAVVVCACM
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mRNA from alignment at Ecto-sp13_S_contig7926:1281..1481-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7926.19212.1 ID=mRNA_Ecto-sp13_S_contig7926.19212.1|Name=mRNA_Ecto-sp13_S_contig7926.19212.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7926:1281..1481- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGAACAAACCTTTGATAAGAAGAGGCGGTTGGATGAGGACGGAAA
CGCCTCGGCGTTCGCCGAAAACACAGCAGAAAGTCGCAAGGAGAAGCTGG
AGACCTGGCTCAAGCCCCTGGACAACGAGCAGCTGGTCAAGCTCCTCCTT
GACATGTACGTTATGTTCCATGCGAATGCTGTCGTTGTGTGTGCATGTAT
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7926:1281..1481-

>mRNA_Ecto-sp13_S_contig7926.19212.1 ID=mRNA_Ecto-sp13_S_contig7926.19212.1|Name=mRNA_Ecto-sp13_S_contig7926.19212.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7926:1281..1481- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGAACAAACCTTTGATAAGAAGAGGCGGTTGGATGAGGACGGAAA
CGCCTCGGCGTTCGCCGAAAACACAGCAGAAAGTCGCAAGGAGAAGCTGG
AGACCTGGCTCAAGCCCCTGGACAACGAGCAGCTGGTCAAGCTCCTCCTT
GACATGTACGTTATGTTCCATGCGAATGCTGTCGTTGTGTGTGCATGTAT
G
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