mRNA_Ecto-sp13_S_contig79214.19207.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig79214.19207.1
Unique NamemRNA_Ecto-sp13_S_contig79214.19207.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig79214.19207.1 vs. uniprot
Match: A0A6H5K6B1_9PHAE (UmuC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B1_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.200e-36
Identity = 84/100 (84.00%), Postives = 89/100 (89.00%), Query Frame = -1 
Query:    1 VDARTVGREGDQAGVKEGRHDTVGGRAGLEERLESSASTTXXXXXXXXXXXXXXXXAEGIGDERFHGDGGGGAEANSRHRPLFGRGGSSGVFGDVDPAVL 300
            VDAR VGREGDQAGV+EGRHDTVGGRAGLEERL SSA+T XXXXXXXXXX      A+GIGDERFHGDGGGG + NSRHRPLFGRGGSSGVFGD+DPAVL
Sbjct:  500 VDARMVGREGDQAGVQEGRHDTVGGRAGLEERLGSSAATAXXXXXXXXXX------ADGIGDERFHGDGGGGVDVNSRHRPLFGRGGSSGVFGDIDPAVL 593
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BLAST of mRNA_Ecto-sp13_S_contig79214.19207.1 vs. uniprot
Match: D7FT49_ECTSI (Translesion synthesis DNA polymerase eta splice variant n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT49_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 9.460e-32
Identity = 81/100 (81.00%), Postives = 85/100 (85.00%), Query Frame = -1 
Query:    1 VDARTVGREGDQAGVKEGRHDTVGGRAGLEERLESSASTTXXXXXXXXXXXXXXXXAEGIGDERFHGDGGGGAEANSRHRPLFGRGGSSGVFGDVDPAVL 300
            VDAR  GREGD AGVKEGRHDTV GRAGLEERL  S +T  XXXXXXXXXXX     +GIGDERFHGDGGGGAEA+S HRPLFGRGGSSGVFG+VDPAVL
Sbjct:  725 VDARMAGREGDPAGVKEGRHDTVVGRAGLEERLGLSPATAAXXXXXXXXXXX-----DGIGDERFHGDGGGGAEASSGHRPLFGRGGSSGVFGEVDPAVL 819
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig79214.19207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6B1_9PHAE1.200e-3684.00UmuC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FT49_ECTSI9.460e-3281.00Translesion synthesis DNA polymerase eta splice va... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig79214contigEcto-sp13_S_contig79214:49..348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size301
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464063.6676538-CDS-Ecto-sp13_S_contig79214:48..3481681464063.6676538-CDS-Ecto-sp13_S_contig79214:48..348Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig79214 49..348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig79214.19207.1prot_Ecto-sp13_S_contig79214.19207.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig79214 49..348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig79214.19207.1

>prot_Ecto-sp13_S_contig79214.19207.1 ID=prot_Ecto-sp13_S_contig79214.19207.1|Name=mRNA_Ecto-sp13_S_contig79214.19207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
QNRRVDVSKNARRPSPAEQRAMPAVGFRSATTIPVKALVADPLRGMGGMG
GGGDGGGGGGGGGGGRLQPFLQPRSPADRVMPAFFDPRLVSLSSHCPGID
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mRNA from alignment at Ecto-sp13_S_contig79214:49..348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig79214.19207.1 ID=mRNA_Ecto-sp13_S_contig79214.19207.1|Name=mRNA_Ecto-sp13_S_contig79214.19207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79214:49..348+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAACCGCCGGGTCGACGTCTCCAAAAACGCCCGAAGACCCTCCCCTGC
CGAACAACGGGCGATGCCTGCTGTTGGCTTCCGCTCCGCCACCACCATCC
CCGTGAAAGCGCTCGTCGCCGATCCCCTCCGCGGCATGGGCGGCATGGGC
GGCGGCGGCGACGGCGGCGGCGGTGGCGGTGGTGGTGGAGGCGGACGACT
CCAACCGTTCCTCCAGCCCCGCTCGCCCGCCGACCGTGTCATGCCGGCCT
TCTTTGACCCCCGCCTGGTCTCCCTCTCTTCCCACTGTCCTGGCATCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig79214:49..348+

>mRNA_Ecto-sp13_S_contig79214.19207.1 ID=mRNA_Ecto-sp13_S_contig79214.19207.1|Name=mRNA_Ecto-sp13_S_contig79214.19207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79214:49..348+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAACCGCCGGGTCGACGTCTCCAAAAACGCCCGAAGACCCTCCCCTGC
CGAACAACGGGCGATGCCTGCTGTTGGCTTCCGCTCCGCCACCACCATCC
CCGTGAAAGCGCTCGTCGCCGATCCCCTCCGCGGCATGGGCGGCATGGGC
GGCGGCGGCGACGGCGGCGGCGGTGGCGGTGGTGGTGGAGGCGGACGACT
CCAACCGTTCCTCCAGCCCCGCTCGCCCGCCGACCGTGTCATGCCGGCCT
TCTTTGACCCCCGCCTGGTCTCCCTCTCTTCCCACTGTCCTGGCATCGAC
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