mRNA_Ecto-sp13_S_contig12293.1920.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Match: D8LJR5_ECTSI (Elongator complex protein 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJR5_ECTSI) HSP 1 Score: 216 bits (550), Expect = 2.720e-65 Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 1
Query: 1 VARYKASGGTEYFISSESPEETLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKVGEGGETQHQGLGTQLLARAEKIARQHGYVKMAVISGVGVRRYYERFGY 324
V +YKASGGTEYFISSESPEETLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKVGEGGETQHQGLGTQLLARAEKIARQHGY+KMAVISGVGVRRYYERFGY
Sbjct: 452 VRKYKASGGTEYFISSESPEETLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKVGEGGETQHQGLGTQLLARAEKIARQHGYIKMAVISGVGVRRYYERFGY 559
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Match: A0A836CEU0_9STRA (Elongator complex protein 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEU0_9STRA) HSP 1 Score: 156 bits (395), Expect = 9.940e-43 Identity = 85/122 (69.67%), Postives = 93/122 (76.23%), Query Frame = 1
Query: 1 VARYKASGGTEYFISSESPEE-TLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKVGEGGE-------------TQHQGLGTQLLARAEKIARQHGYVKMAVISGVGVRRYYERFGY 324
V RY ASGGTEYFIS ESP+E LYGFLRLRIPS S L +LKGCALIRELHVYGKLK+V EGG +QHQGLG+QLLA+AE IA +GY K+AVISGVGVRRYYERFGY
Sbjct: 449 VRRYAASGGTEYFISFESPDEKVLYGFLRLRIPSRRSQCLLELKGCALIRELHVYGKLKEVTEGGRGREQGGGKGVKDASQHQGLGSQLLAKAEDIALSYGYGKLAVISGVGVRRYYERFGY 570
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Match: A0A7S3UVY7_HETAK (Elongator complex protein 3 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVY7_HETAK) HSP 1 Score: 152 bits (384), Expect = 1.170e-42 Identity = 71/109 (65.14%), Postives = 93/109 (85.32%), Query Frame = 1
Query: 1 VARYKASGGTEYFISSESPEET-LYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKVGEGGETQHQGLGTQLLARAEKIARQHGYVKMAVISGVGVRRYYERFGY 324
V RY+ASGG EYF+S E+P+E+ LYGFLRLRIPSG SP++P L+G AL+RELHVYG L++VG G+TQH+GLG++LL AEK+A +HG++K+A+ISGVGVR YY + GY
Sbjct: 253 VRRYEASGGLEYFLSFETPDESVLYGFLRLRIPSGNSPLVPGLRGAALVRELHVYGLLRRVGADGKTQHRGLGSRLLREAEKLALRHGHLKVAIISGVGVREYYRKRGY 361
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Match: A0A6N1P2T5_9VIRU (Radical SAM core domain-containing protein n=1 Tax=Tupanvirus soda lake TaxID=2126985 RepID=A0A6N1P2T5_9VIRU) HSP 1 Score: 131 bits (329), Expect = 2.040e-33 Identity = 66/112 (58.93%), Postives = 86/112 (76.79%), Query Frame = 1
Query: 1 VARYKASGGTEYFISSESPEETL-YGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKVGEGGE---TQHQGLGTQLLARAEKIARQHGYVKMAVISGVGVRRYYERFGY 324
V +YK+SGGTE+FIS ES +ET+ YGF RLR+ +S ++P+L GCA+IRELHVYGK+ VG G + +QH GLG +LL++AE+IA GY K+AVISGVGVR YY + GY
Sbjct: 470 VRKYKSSGGTEHFISFESLDETIIYGFCRLRLTPNSSTVMPELDGCAMIRELHVYGKMNAVGCGKQELSSQHLGLGKRLLSKAEQIAHDAGYNKIAVISGVGVRNYYRKLGY 581
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Match: A0A1V6IWL9_9BACT (Oxygen-independent coproporphyrinogen-III oxidase 1 n=1 Tax=Parcubacteria group bacterium ADurb.Bin016 TaxID=1852935 RepID=A0A1V6IWL9_9BACT) HSP 1 Score: 126 bits (317), Expect = 5.580e-32 Identity = 62/107 (57.94%), Postives = 82/107 (76.64%), Query Frame = 1
Query: 7 RYKASGGTEYFISSESPEET-LYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKVGEGGETQHQGLGTQLLARAEKIARQHGYVKMAVISGVGVRRYYERFGY 324
RY+A G EYF+S ESP+++ L+GF RL +P + PDL CALIRELH+YG L+ +G G+ QH+GLG +LLA+AEKIA++H Y K+A+ISGVGVR YY +FGY
Sbjct: 417 RYRAGDGQEYFLSWESPDQSILFGFCRLYLPKQPANN-PDLNNCALIRELHIYGILQPLGSQGQVQHRGLGQKLLAQAEKIAQEHHYSKVAIISGVGVRNYYRKFGY 522
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Match: A0A2G9NCJ9_9ARCH (tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 (Fragment) n=1 Tax=Candidatus Pacearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_35_13 TaxID=1974445 RepID=A0A2G9NCJ9_9ARCH) HSP 1 Score: 119 bits (297), Expect = 1.490e-31 Identity = 54/112 (48.21%), Postives = 78/112 (69.64%), Query Frame = 1
Query: 1 VARYKASGGTEYFISSESPEETLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKVGEGGE----TQHQGLGTQLLARAEKIARQHGYVKMAVISGVGVRRYYERFGY 324
V+ Y AS G E F+ + E L+G LRLR P SP++P+L CA++RE+HVYGK ++GE + QH GLG +L+ +AE++++ +G+ K+AVISGVGVR YYE+ GY
Sbjct: 73 VSEYPASNGKELFLQVVNSENVLFGLLRLRFPGSPSPLIPELNDCAIVREVHVYGKALRLGESNDDDNTAQHGGLGKELMKKAEELSKSNGFKKLAVISGVGVRPYYEKLGY 184
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Match: A0A6N1NQ95_9VIRU (Elp3 domain-containing protein n=1 Tax=Tupanvirus deep ocean TaxID=2126984 RepID=A0A6N1NQ95_9VIRU) HSP 1 Score: 125 bits (314), Expect = 2.660e-31 Identity = 65/112 (58.04%), Postives = 83/112 (74.11%), Query Frame = 1
Query: 1 VARYKASGGTEYFISSESPEE-TLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKVGEGGE---TQHQGLGTQLLARAEKIARQHGYVKMAVISGVGVRRYYERFGY 324
V YK+SGGTEYFIS ES +E T+YGF RLR+ +S ++ +L CA+IRELHVYGK+ VG G + +QH GLG +LL +AE+IA + GY K+AVISGVGVR YY + GY
Sbjct: 490 VRNYKSSGGTEYFISFESLDESTIYGFCRLRLTPNSSTVVSELDDCAMIRELHVYGKMNAVGCGKQELSSQHLGLGKRLLNKAEQIALEAGYKKIAVISGVGVRNYYRKLGY 601
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Match: A0A2H0W4S4_9BACT (tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 n=1 Tax=Candidatus Buchananbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_33_19 TaxID=1974525 RepID=A0A2H0W4S4_9BACT) HSP 1 Score: 123 bits (309), Expect = 7.110e-31 Identity = 64/110 (58.18%), Postives = 80/110 (72.73%), Query Frame = 1
Query: 1 VARYKASGGTEYFISSESPEE-TLYGFLRLRIPS-GTSPILPDLKGCALIRELHVYGKLKKVGEGGETQHQGLGTQLLARAEKIARQHGYVKMAVISGVGVRRYYERFGY 324
V YKA+ G EYF+S ES +E LY FLRLRI S + +P+L G LIRELH YGKL ++G G QH GLGT LL +AE+I +++G KMA+I+GVGVRRYYE+FGY
Sbjct: 406 VRPYKANEGMEYFLSYESKDEKVLYAFLRLRIDSKAQTNFVPELVGAGLIRELHTYGKLTEIGHKGNVQHGGLGTALLLKAEEICQKNGLNKMAIIAGVGVRRYYEKFGY 515
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Match: T0SE84_SAPDV (Elongator complex protein 3 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0SE84_SAPDV) HSP 1 Score: 124 bits (310), Expect = 8.820e-31 Identity = 60/110 (54.55%), Postives = 84/110 (76.36%), Query Frame = 1
Query: 7 RYKASGGTEYFISSESPEE-TLYGFLRLRI-PSGTSPILPDLKGCALIRELHVYGKLKKVGEGGET--QHQGLGTQLLARAEKIARQHGYVKMAVISGVGVRRYYERFGY 324
+Y+A+ GTEYF S E+P+E T+ GF RLR+ P+ + + P+L+GCAL+RELHVYG+L V G ++ QH G GTQL+ +AE++AR HGY KMAVI+GVGVR +Y + G+
Sbjct: 466 KYEANDGTEYFFSFETPDESTICGFCRLRLSPTAGAGVFPELQGCALVRELHVYGQLVAVNSGDKSKPQHIGFGTQLMLKAEEVARAHGYTKMAVIAGVGVRNFYRKLGF 575
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Match: A0A0N0P567_LEPSE (Elongator complex protein 3 n=1 Tax=Leptomonas seymouri TaxID=5684 RepID=A0A0N0P567_LEPSE) HSP 1 Score: 123 bits (308), Expect = 1.890e-30 Identity = 64/113 (56.64%), Postives = 82/113 (72.57%), Query Frame = 1
Query: 10 YKASGGTEYFISSESPEET-LYGFLRLRIPSGT----SPILPDLKGCALIRELHVYGKLKKVGE---GGETQHQGLGTQLLARAEKIARQHGYVKMAVISGVGVRRYYERFGY 324
++ASGGTE+++S E+P+ T LYG LRLR+ ILP L+GCALIRELH YGKL V + G ETQH G+GTQL+ AE+IA +HG+ + AVI+GVGVRRYY + GY
Sbjct: 517 FRASGGTEFYLSVENPQRTQLYGHLRLRLRDDAVLEDRNILPVLRGCALIRELHTYGKLVAVSQHNTGHETQHVGVGTQLMREAERIASEHGFARTAVIAGVGVRRYYAKLGY 629 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12293.1920.1 >prot_Ecto-sp13_S_contig12293.1920.1 ID=prot_Ecto-sp13_S_contig12293.1920.1|Name=mRNA_Ecto-sp13_S_contig12293.1920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp VARYKASGGTEYFISSESPEETLYGFLRLRIPSGTSPILPDLKGCALIREback to top mRNA from alignment at Ecto-sp13_S_contig12293:256..2173+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12293.1920.1 ID=mRNA_Ecto-sp13_S_contig12293.1920.1|Name=mRNA_Ecto-sp13_S_contig12293.1920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1918bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12293:256..2173+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12293:256..2173+ >mRNA_Ecto-sp13_S_contig12293.1920.1 ID=mRNA_Ecto-sp13_S_contig12293.1920.1|Name=mRNA_Ecto-sp13_S_contig12293.1920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12293:256..2173+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |