mRNA_Ecto-sp13_S_contig12293.1920.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12293.1920.1
Unique NamemRNA_Ecto-sp13_S_contig12293.1920.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Match: D8LJR5_ECTSI (Elongator complex protein 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJR5_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 2.720e-65
Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 1
Query:    1 VARYKASGGTEYFISSESPEETLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKVGEGGETQHQGLGTQLLARAEKIARQHGYVKMAVISGVGVRRYYERFGY 324
            V +YKASGGTEYFISSESPEETLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKVGEGGETQHQGLGTQLLARAEKIARQHGY+KMAVISGVGVRRYYERFGY
Sbjct:  452 VRKYKASGGTEYFISSESPEETLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKVGEGGETQHQGLGTQLLARAEKIARQHGYIKMAVISGVGVRRYYERFGY 559          
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Match: A0A836CEU0_9STRA (Elongator complex protein 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEU0_9STRA)

HSP 1 Score: 156 bits (395), Expect = 9.940e-43
Identity = 85/122 (69.67%), Postives = 93/122 (76.23%), Query Frame = 1
Query:    1 VARYKASGGTEYFISSESPEE-TLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKVGEGGE-------------TQHQGLGTQLLARAEKIARQHGYVKMAVISGVGVRRYYERFGY 324
            V RY ASGGTEYFIS ESP+E  LYGFLRLRIPS  S  L +LKGCALIRELHVYGKLK+V EGG              +QHQGLG+QLLA+AE IA  +GY K+AVISGVGVRRYYERFGY
Sbjct:  449 VRRYAASGGTEYFISFESPDEKVLYGFLRLRIPSRRSQCLLELKGCALIRELHVYGKLKEVTEGGRGREQGGGKGVKDASQHQGLGSQLLAKAEDIALSYGYGKLAVISGVGVRRYYERFGY 570          
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Match: A0A7S3UVY7_HETAK (Elongator complex protein 3 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVY7_HETAK)

HSP 1 Score: 152 bits (384), Expect = 1.170e-42
Identity = 71/109 (65.14%), Postives = 93/109 (85.32%), Query Frame = 1
Query:    1 VARYKASGGTEYFISSESPEET-LYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKVGEGGETQHQGLGTQLLARAEKIARQHGYVKMAVISGVGVRRYYERFGY 324
            V RY+ASGG EYF+S E+P+E+ LYGFLRLRIPSG SP++P L+G AL+RELHVYG L++VG  G+TQH+GLG++LL  AEK+A +HG++K+A+ISGVGVR YY + GY
Sbjct:  253 VRRYEASGGLEYFLSFETPDESVLYGFLRLRIPSGNSPLVPGLRGAALVRELHVYGLLRRVGADGKTQHRGLGSRLLREAEKLALRHGHLKVAIISGVGVREYYRKRGY 361          
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Match: A0A6N1P2T5_9VIRU (Radical SAM core domain-containing protein n=1 Tax=Tupanvirus soda lake TaxID=2126985 RepID=A0A6N1P2T5_9VIRU)

HSP 1 Score: 131 bits (329), Expect = 2.040e-33
Identity = 66/112 (58.93%), Postives = 86/112 (76.79%), Query Frame = 1
Query:    1 VARYKASGGTEYFISSESPEETL-YGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKVGEGGE---TQHQGLGTQLLARAEKIARQHGYVKMAVISGVGVRRYYERFGY 324
            V +YK+SGGTE+FIS ES +ET+ YGF RLR+   +S ++P+L GCA+IRELHVYGK+  VG G +   +QH GLG +LL++AE+IA   GY K+AVISGVGVR YY + GY
Sbjct:  470 VRKYKSSGGTEHFISFESLDETIIYGFCRLRLTPNSSTVMPELDGCAMIRELHVYGKMNAVGCGKQELSSQHLGLGKRLLSKAEQIAHDAGYNKIAVISGVGVRNYYRKLGY 581          
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Match: A0A1V6IWL9_9BACT (Oxygen-independent coproporphyrinogen-III oxidase 1 n=1 Tax=Parcubacteria group bacterium ADurb.Bin016 TaxID=1852935 RepID=A0A1V6IWL9_9BACT)

HSP 1 Score: 126 bits (317), Expect = 5.580e-32
Identity = 62/107 (57.94%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    7 RYKASGGTEYFISSESPEET-LYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKVGEGGETQHQGLGTQLLARAEKIARQHGYVKMAVISGVGVRRYYERFGY 324
            RY+A  G EYF+S ESP+++ L+GF RL +P   +   PDL  CALIRELH+YG L+ +G  G+ QH+GLG +LLA+AEKIA++H Y K+A+ISGVGVR YY +FGY
Sbjct:  417 RYRAGDGQEYFLSWESPDQSILFGFCRLYLPKQPANN-PDLNNCALIRELHIYGILQPLGSQGQVQHRGLGQKLLAQAEKIAQEHHYSKVAIISGVGVRNYYRKFGY 522          
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Match: A0A2G9NCJ9_9ARCH (tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 (Fragment) n=1 Tax=Candidatus Pacearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_35_13 TaxID=1974445 RepID=A0A2G9NCJ9_9ARCH)

HSP 1 Score: 119 bits (297), Expect = 1.490e-31
Identity = 54/112 (48.21%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 VARYKASGGTEYFISSESPEETLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKVGEGGE----TQHQGLGTQLLARAEKIARQHGYVKMAVISGVGVRRYYERFGY 324
            V+ Y AS G E F+   + E  L+G LRLR P   SP++P+L  CA++RE+HVYGK  ++GE  +     QH GLG +L+ +AE++++ +G+ K+AVISGVGVR YYE+ GY
Sbjct:   73 VSEYPASNGKELFLQVVNSENVLFGLLRLRFPGSPSPLIPELNDCAIVREVHVYGKALRLGESNDDDNTAQHGGLGKELMKKAEELSKSNGFKKLAVISGVGVRPYYEKLGY 184          
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Match: A0A6N1NQ95_9VIRU (Elp3 domain-containing protein n=1 Tax=Tupanvirus deep ocean TaxID=2126984 RepID=A0A6N1NQ95_9VIRU)

HSP 1 Score: 125 bits (314), Expect = 2.660e-31
Identity = 65/112 (58.04%), Postives = 83/112 (74.11%), Query Frame = 1
Query:    1 VARYKASGGTEYFISSESPEE-TLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKVGEGGE---TQHQGLGTQLLARAEKIARQHGYVKMAVISGVGVRRYYERFGY 324
            V  YK+SGGTEYFIS ES +E T+YGF RLR+   +S ++ +L  CA+IRELHVYGK+  VG G +   +QH GLG +LL +AE+IA + GY K+AVISGVGVR YY + GY
Sbjct:  490 VRNYKSSGGTEYFISFESLDESTIYGFCRLRLTPNSSTVVSELDDCAMIRELHVYGKMNAVGCGKQELSSQHLGLGKRLLNKAEQIALEAGYKKIAVISGVGVRNYYRKLGY 601          
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Match: A0A2H0W4S4_9BACT (tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 n=1 Tax=Candidatus Buchananbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_33_19 TaxID=1974525 RepID=A0A2H0W4S4_9BACT)

HSP 1 Score: 123 bits (309), Expect = 7.110e-31
Identity = 64/110 (58.18%), Postives = 80/110 (72.73%), Query Frame = 1
Query:    1 VARYKASGGTEYFISSESPEE-TLYGFLRLRIPS-GTSPILPDLKGCALIRELHVYGKLKKVGEGGETQHQGLGTQLLARAEKIARQHGYVKMAVISGVGVRRYYERFGY 324
            V  YKA+ G EYF+S ES +E  LY FLRLRI S   +  +P+L G  LIRELH YGKL ++G  G  QH GLGT LL +AE+I +++G  KMA+I+GVGVRRYYE+FGY
Sbjct:  406 VRPYKANEGMEYFLSYESKDEKVLYAFLRLRIDSKAQTNFVPELVGAGLIRELHTYGKLTEIGHKGNVQHGGLGTALLLKAEEICQKNGLNKMAIIAGVGVRRYYEKFGY 515          
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Match: T0SE84_SAPDV (Elongator complex protein 3 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0SE84_SAPDV)

HSP 1 Score: 124 bits (310), Expect = 8.820e-31
Identity = 60/110 (54.55%), Postives = 84/110 (76.36%), Query Frame = 1
Query:    7 RYKASGGTEYFISSESPEE-TLYGFLRLRI-PSGTSPILPDLKGCALIRELHVYGKLKKVGEGGET--QHQGLGTQLLARAEKIARQHGYVKMAVISGVGVRRYYERFGY 324
            +Y+A+ GTEYF S E+P+E T+ GF RLR+ P+  + + P+L+GCAL+RELHVYG+L  V  G ++  QH G GTQL+ +AE++AR HGY KMAVI+GVGVR +Y + G+
Sbjct:  466 KYEANDGTEYFFSFETPDESTICGFCRLRLSPTAGAGVFPELQGCALVRELHVYGQLVAVNSGDKSKPQHIGFGTQLMLKAEEVARAHGYTKMAVIAGVGVRNFYRKLGF 575          
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Match: A0A0N0P567_LEPSE (Elongator complex protein 3 n=1 Tax=Leptomonas seymouri TaxID=5684 RepID=A0A0N0P567_LEPSE)

HSP 1 Score: 123 bits (308), Expect = 1.890e-30
Identity = 64/113 (56.64%), Postives = 82/113 (72.57%), Query Frame = 1
Query:   10 YKASGGTEYFISSESPEET-LYGFLRLRIPSGT----SPILPDLKGCALIRELHVYGKLKKVGE---GGETQHQGLGTQLLARAEKIARQHGYVKMAVISGVGVRRYYERFGY 324
            ++ASGGTE+++S E+P+ T LYG LRLR+          ILP L+GCALIRELH YGKL  V +   G ETQH G+GTQL+  AE+IA +HG+ + AVI+GVGVRRYY + GY
Sbjct:  517 FRASGGTEFYLSVENPQRTQLYGHLRLRLRDDAVLEDRNILPVLRGCALIRELHTYGKLVAVSQHNTGHETQHVGVGTQLMREAERIASEHGFARTAVIAGVGVRRYYAKLGY 629          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12293.1920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJR5_ECTSI2.720e-6597.22Elongator complex protein 3 n=2 Tax=Ectocarpus Tax... [more]
A0A836CEU0_9STRA9.940e-4369.67Elongator complex protein 3 n=1 Tax=Tribonema minu... [more]
A0A7S3UVY7_HETAK1.170e-4265.14Elongator complex protein 3 (Fragment) n=1 Tax=Het... [more]
A0A6N1P2T5_9VIRU2.040e-3358.93Radical SAM core domain-containing protein n=1 Tax... [more]
A0A1V6IWL9_9BACT5.580e-3257.94Oxygen-independent coproporphyrinogen-III oxidase ... [more]
A0A2G9NCJ9_9ARCH1.490e-3148.21tRNA uridine(34) 5-carboxymethylaminomethyl modifi... [more]
A0A6N1NQ95_9VIRU2.660e-3158.04Elp3 domain-containing protein n=1 Tax=Tupanvirus ... [more]
A0A2H0W4S4_9BACT7.110e-3158.18tRNA uridine(34) 5-carboxymethylaminomethyl modifi... [more]
T0SE84_SAPDV8.820e-3154.55Elongator complex protein 3 n=2 Tax=Saprolegnia Ta... [more]
A0A0N0P567_LEPSE1.890e-3056.64Elongator complex protein 3 n=1 Tax=Leptomonas sey... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12293contigEcto-sp13_S_contig12293:256..2173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score216.9
Seed ortholog evalue4.8e-54
Seed eggNOG ortholog2880.D8LJR5
Model size324
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.radical SAM domain protein
EggNOG OGsCOG1243@1,KOG2535@2759
Cds size324
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462653.8364327-CDS-Ecto-sp13_S_contig12293:255..3181681462653.8364327-CDS-Ecto-sp13_S_contig12293:255..318Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12293 256..318 +
1681462653.846678-CDS-Ecto-sp13_S_contig12293:1061..11751681462653.846678-CDS-Ecto-sp13_S_contig12293:1061..1175Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12293 1062..1175 +
1681462653.8560383-CDS-Ecto-sp13_S_contig12293:1800..18931681462653.8560383-CDS-Ecto-sp13_S_contig12293:1800..1893Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12293 1801..1893 +
1681462653.8659165-CDS-Ecto-sp13_S_contig12293:2119..21731681462653.8659165-CDS-Ecto-sp13_S_contig12293:2119..2173Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12293 2120..2173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12293.1920.1prot_Ecto-sp13_S_contig12293.1920.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12293 256..2173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12293.1920.1

>prot_Ecto-sp13_S_contig12293.1920.1 ID=prot_Ecto-sp13_S_contig12293.1920.1|Name=mRNA_Ecto-sp13_S_contig12293.1920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
VARYKASGGTEYFISSESPEETLYGFLRLRIPSGTSPILPDLKGCALIRE
LHVYGKLKKVGEGGETQHQGLGTQLLARAEKIARQHGYVKMAVISGVGVR
RYYERFGY
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mRNA from alignment at Ecto-sp13_S_contig12293:256..2173+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12293.1920.1 ID=mRNA_Ecto-sp13_S_contig12293.1920.1|Name=mRNA_Ecto-sp13_S_contig12293.1920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1918bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12293:256..2173+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCAAGGTACAAGGCGTCAGGGGGTACCGAGTACTTCATCAGCTCAGA GTCTCCAGAGGAGGTGAGCCTGAGCTTTAGGCCAGCAGGCAGACAGGCCA CCAGACAGCAGTCGACCAATCGATGCACCGCACTCTCTGGTCCCGTTGTC AAATATTGGTTGCGGTGTAACCGCATCGCAATCCATGGTAAATAGTACTT CTGTACCACCTCATTTCTGTATGGCTCCCGGCGGGGTTAGGAACCGTATA CACCGACGGGTTTACGCTGGCGCCGAGAAAAGATGGGCTAGGGGAAACTG CACTGTATGTTGTACTTGAAGGCTTGACACACGTCTAGCTGAATCCTGCT TTTCGTTGGTGGTGCTCCTGTGGAGTAAATGGAGCACGCCTCTCGCCATT TTCGGAGTCATATTCGGTGGCGTGGAGTCAATCAACCACCGACCGTGTTT GGTGGCCGGTACTACTTTTTCACCTCTACGCACGGCGATGTTAAGTGTGA CAACGGGCAATGCAATGTTCATCATCCGCGGCGATGATTCGTCACCAGCA ACCAGTTTTTTCGGCTTCTCCGTGACCCACTACTATTGTCTTGGAGGACC TTTGAGTAGACAACTACCGTGCACAAGAGCACAGAACGATCGCACCCAGA CTCGCGTACCGTTTCATTCTCCTTGAGGCCGAACACTCGCCCTCCCCTGC CGCCGCCCTCTCGCCCTCCTCCCTCCCTCCTTCTGTCTCCTCTTCGACAA CTGCTGTCTACTACCGGCGCCGTGTGGACGCCTCCCTCCTCGCGGCAACG GACCAGACGCTGTATGGATTCCTGAGGCTACGTATCCCTAGCGGGACAAG TCCCATCCTTCCCGACCTCAAGGGCTGTGCCTTGATCCGGGAGTTGCACG TCTACGGCAAGCTCAAGAAGGTACTGCTGTTCAGCAGACCAGTCCTCCTG CTCTTACTTGTTGCCATGACGCCCGCCGTGCAATGTGCTAGAGTTGTCTT TTTTTGTGCGTCTGGTCGTGTGCTCGTCGTGTTGGCCGGTGGCGAGTGAA GGCTTGGGGGAGGAGGTGGTACAGCTCACGCTGAAGGCGTTGTACTCATG TGTGCGCGCGAGGCACGACGCATGTTGTTCGTCTTGCAGGTTTCCGTTCG TGCTCTTGCGGCTTGAGCCATCCGTGTCTGTGGTTGGACGGTCAATTTCA TTAAGTCTCCCCCCAAGGGAAAATAAAAGGAACGATGCTCCGTCCTCTCG AGGACGCGTGGTCAATGGTCTAACCGCTAAGGCATGCAAAAACATAAGAG CACGCCCCAAGGGGAAAAAGTGGATGCTGTAATGTCCTCCGCCACGACCA TTGGATTGGATCAGGTTACGGTTTCCCGTGTTGGTAGGCATCTATCTATC TATCCTCTCACGGAGTTTTTTTTGTGTGAAGTATTTAGTTTCGCTAGCTC TCCTGGGCGGGATTTTGGATCGACGAACACGACGAGTGATGCCTAGTTTT TTGTGTGTCAACACTGTTTTTTGCATGTTGTGTTATTTTCACTAGGTGGG AGAGGGCGGGGAGACACAGCACCAGGGCCTTGGCACTCAGCTCCTGGCTA GGGCCGAGAAGATCGCTCGACAGCACGGCTACGTCAAGGTCAGGCTTGTT GACATCATGGCTACGTTGTCATCAGATTTTTAAGGGACAAATCGTGTAGG CACCCTTTACTATTCTAAGCCAGCCTTGTCTTGCTGTATTGCTTCGTTTC GCCAGGACCTCACGATTATGTTTTCGATTGTCATGCTGCCTCTCTCTCTC TCTCTCTCCGTCTGTCGCGCGCGCCCCTCAATCACATTTCGTTTTTTCTT CGCCCTGCGGACAGATGGCAGTCATCTCGGGCGTTGGCGTTCGCCGGTAC TACGAGCGCTTCGGCTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12293:256..2173+

>mRNA_Ecto-sp13_S_contig12293.1920.1 ID=mRNA_Ecto-sp13_S_contig12293.1920.1|Name=mRNA_Ecto-sp13_S_contig12293.1920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12293:256..2173+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCAAGGTACAAGGCGTCAGGGGGTACCGAGTACTTCATCAGCTCAGA
GTCTCCAGAGGAGACGCTGTATGGATTCCTGAGGCTACGTATCCCTAGCG
GGACAAGTCCCATCCTTCCCGACCTCAAGGGCTGTGCCTTGATCCGGGAG
TTGCACGTCTACGGCAAGCTCAAGAAGGTGGGAGAGGGCGGGGAGACACA
GCACCAGGGCCTTGGCACTCAGCTCCTGGCTAGGGCCGAGAAGATCGCTC
GACAGCACGGCTACGTCAAGATGGCAGTCATCTCGGGCGTTGGCGTTCGC
CGGTACTACGAGCGCTTCGGCTAC
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