mRNA_Ecto-sp13_S_contig792.19201.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig792.19201.1
Unique NamemRNA_Ecto-sp13_S_contig792.19201.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig792.19201.1 vs. uniprot
Match: A0A6H5JKL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL9_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 1.600e-37
Identity = 96/107 (89.72%), Postives = 97/107 (90.65%), Query Frame = -1 
Query:    7 WEPLMEPWGARVELEVGXXXXXXXXXXVARRSTGRQEPSPPSSSADRAGRLSPPGHHGRGRKNGRDXXXXXXXXXX-RQLQGLARRLSTHGVPWRQQQQRESTTGGL 324
            WEPLMEPWGARVELEVG XXXXXXX   ARRSTGR EPSPP+SSADRAGRLS PGHHGRGR NGRD  XXXXXXXX RQLQGLARRLSTHGVPWRQQQQRESTTGGL
Sbjct: 2336 WEPLMEPWGARVELEVGLXXXXXXX--XARRSTGRLEPSPPASSADRAGRLSLPGHHGRGRINGRDRGXXXXXXXXXRQLQGLARRLSTHGVPWRQQQQRESTTGGL 2440
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BLAST of mRNA_Ecto-sp13_S_contig792.19201.1 vs. uniprot
Match: D8LP20_ECTSI (Vacuolar protein sorting-associated protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP20_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.150e-32
Identity = 85/109 (77.98%), Postives = 87/109 (79.82%), Query Frame = -1 
Query:    1 WEPLMEPWGARVELEVGXXXXXXXXXXVARRSTGRQEPSPPSSSADRAGRLSPPGHHGRGRKNGRDXXXXXXXXXXR-QLQGLARRLSTHGVPWRQQQQRESTTGGLER 324
            WEPL+EPWGARVELEVG           ARRSTGRQE      SADRAGRLS PGHHGRGR+NGR XXXXXXXXXX  QLQGLARRLSTHG PWRQQQQRESTTGGLER
Sbjct: 3198 WEPLVEPWGARVELEVGLGGAG------ARRSTGRQEXXXXXXSADRAGRLSSPGHHGRGRRNGRXXXXXXXXXXXXXQLQGLARRLSTHGAPWRQQQQRESTTGGLER 3300
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig792.19201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKL9_9PHAE1.600e-3789.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP20_ECTSI1.150e-3277.98Vacuolar protein sorting-associated protein, putat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig792contigEcto-sp13_S_contig792:3536..3861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size328
Hectar predicted targeting categorymitochondrion
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464063.0051837-CDS-Ecto-sp13_S_contig792:3535..38591681464063.0051837-CDS-Ecto-sp13_S_contig792:3535..3859Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig792 3536..3859 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig792.19201.1prot_Ecto-sp13_S_contig792.19201.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig792 3536..3859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig792.19201.1

>prot_Ecto-sp13_S_contig792.19201.1 ID=prot_Ecto-sp13_S_contig792.19201.1|Name=mRNA_Ecto-sp13_S_contig792.19201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
PLEASRRRLPLLLLAPRHSVGRQPSRQPLQLATAASAAAAAAVAAVFSPS
PVVSRGRKPPRPVGRRRRRRRFLPPGASPCDGAGAGAGAAKADLELHPST
PRLHQGLP
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mRNA from alignment at Ecto-sp13_S_contig792:3536..3861+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig792.19201.1 ID=mRNA_Ecto-sp13_S_contig792.19201.1|Name=mRNA_Ecto-sp13_S_contig792.19201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=326bp|location=Sequence derived from alignment at Ecto-sp13_S_contig792:3536..3861+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCTCGAGGCCTCCCGTCGTCGACTCCCGTTGCTGCTGCTGGCGCCAAG
GCACTCCGTGGGTCGACAGCCGTCGCGCCAGCCCTTGCAGCTGGCGACCG
CGGCCTCCGCCGCCGCCGCCGCTGCGGTCGCGGCCGTTTTTTCTCCCTCT
CCCGTGGTGTCCAGGGGGAGAAAGCCTCCCCGCCCGGTCGGCCGACGAAG
AAGGCGGCGAAGGTTCCTGCCGCCCGGTGCTTCGCCGTGCGACGGCGCCG
GCGCCGGCGCCGGCGCCGCCAAGGCCGACCTCGAGCTCCACCCTAGCACC
CCACGGCTCCATCAGGGGCTCCCACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig792:3536..3861+

>mRNA_Ecto-sp13_S_contig792.19201.1 ID=mRNA_Ecto-sp13_S_contig792.19201.1|Name=mRNA_Ecto-sp13_S_contig792.19201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig792:3536..3861+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCTCGAGGCCTCCCGTCGTCGACTCCCGTTGCTGCTGCTGGCGCCAAG
GCACTCCGTGGGTCGACAGCCGTCGCGCCAGCCCTTGCAGCTGGCGACCG
CGGCCTCCGCCGCCGCCGCCGCTGCGGTCGCGGCCGTTTTTTCTCCCTCT
CCCGTGGTGTCCAGGGGGAGAAAGCCTCCCCGCCCGGTCGGCCGACGAAG
AAGGCGGCGAAGGTTCCTGCCGCCCGGTGCTTCGCCGTGCGACGGCGCCG
GCGCCGGCGCCGGCGCCGCCAAGGCCGACCTCGAGCTCCACCCTAGCACC
CCACGGCTCCATCAGGGGCTCCCA
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