mRNA_Ecto-sp13_S_contig792.19202.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig792.19202.1
Unique Name	mRNA_Ecto-sp13_S_contig792.19202.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig792.19202.1 vs. uniprot
Match: D7G5P9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P9_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 7.830e-95
Identity = 326/370 (88.11%), Postives = 331/370 (89.46%), Query Frame = 1

Query:    1 MHTIKRTCSPAGDGDGATPTGRATTKSNSHGSGSTSGQAPVDKNAHGGNQSESAVYKALGLVCRSGFDNVGCESTLSLVCVSYCNILRESLGWKLTVQRSTPARFINLLHPAADAGANEGRCDRIQVPVAIHRLTYDLQDFPTDVVWPRDLRRLSFGDNFNGSIEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRPIAGMKEXXXXXXXXXXXXXXXXXXXGVALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLALPARFGRQGEHEDGDDXXXDQWRAVLPVGCRLQRAECG 1110
            MHTIKRTC   GDG  ATPTGR TTKSNS  SGSTS +AP DKNA+G  QS SAVYKALGLVCRSGFDNVGCESTLSLVCVSYCN LRESL WKLT+ +STPAR IN+L PAA AGANEGRCDRIQVPVAIH LTYDLQDFPTDVVWPRDLRRLSFGDNFNGSIE   XXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXXX   IAGMKEXXXXXXXXXXXXXXXXXXX V LPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLALPARFGRQGEHEDGDD   DQWRAVLPVGCR QRA CG
Sbjct:    1 MHTIKRTCPSTGDG--ATPTGRGTTKSNSS-SGSTSTEAP-DKNAYGEYQSGSAVYKALGLVCRSGFDNVGCESTLSLVCVSYCNTLRESLRWKLTIAQSTPARLINVLRPAAAAGANEGRCDRIQVPVAIHHLTYDLQDFPTDVVWPRDLRRLSFGDNFNGSIEGVRXXXXXXXXXXXXXXXXXXXXXXXXSLKQLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-IAGMKEXXXXXXXXXXXXXXXXXXXXVTLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLALPARFGRQGEHEDGDDDDVDQWRAVLPVGCRFQRAVCG 365

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig792.19202.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig792.19202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7G5P9_ECTSI	7.830e-95	88.11	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig792	contig	Ecto-sp13_S_contig792:18155..20921 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	1113
Hectar predicted targeting category	other localisation
Exons	6
Ec32 ortholog description	FNIP
Ec32 ortholog	Ec-12_008680.1
Cds size	1113

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig792.19202.1	prot_Ecto-sp13_S_contig792.19202.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig792 18155..20921 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464062.9040108-CDS-Ecto-sp13_S_contig792:18154..18558	1681464062.9040108-CDS-Ecto-sp13_S_contig792:18154..18558	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig792 18155..18558 +
1681464062.9181623-CDS-Ecto-sp13_S_contig792:19177..19295	1681464062.9181623-CDS-Ecto-sp13_S_contig792:19177..19295	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig792 19178..19295 +
1681464062.929487-CDS-Ecto-sp13_S_contig792:19423..19555	1681464062.929487-CDS-Ecto-sp13_S_contig792:19423..19555	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig792 19424..19555 +
1681464062.9407084-CDS-Ecto-sp13_S_contig792:19816..19951	1681464062.9407084-CDS-Ecto-sp13_S_contig792:19816..19951	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig792 19817..19951 +
1681464062.953607-CDS-Ecto-sp13_S_contig792:20287..20485	1681464062.953607-CDS-Ecto-sp13_S_contig792:20287..20485	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig792 20288..20485 +
1681464062.9714813-CDS-Ecto-sp13_S_contig792:20795..20921	1681464062.9714813-CDS-Ecto-sp13_S_contig792:20795..20921	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig792 20796..20921 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig792:18155..20921+
coding sequence from alignment at Ecto-sp13_S_contig792:18155..20921+

protein sequence of mRNA_Ecto-sp13_S_contig792.19202.1

>prot_Ecto-sp13_S_contig792.19202.1 ID=prot_Ecto-sp13_S_contig792.19202.1|Name=mRNA_Ecto-sp13_S_contig792.19202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=371bp
MHTIKRTCSPAGDGDGATPTGRATTKSNSHGSGSTSGQAPVDKNAHGGNQ
SESAVYKALGLVCRSGFDNVGCESTLSLVCVSYCNILRESLGWKLTVQRS
TPARFINLLHPAADAGANEGRCDRIQVPVAIHRLTYDLQDFPTDVVWPRD
LRRLSFGDNFNGSIEDVRWPARLEVMWLGQSFNHPVANVEWPASLKQLRF
GRAFDQDVERVRWPNDLEQLVFGHQFNRPIAGMKEWPPSLLVLSFGHAFN
QGVAGVALPPRLEFLEFGQDFDHSIDELSLPPTLQHIRFSHKFDQNLDQA
SWPRSLRTVWLCGTFAQPIRDVVWPAALKVLALPARFGRQGEHEDGDDDD
DDQWRAVLPVGCRLQRAECG*

mRNA from alignment at Ecto-sp13_S_contig792:18155..20921+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig792.19202.1 ID=mRNA_Ecto-sp13_S_contig792.19202.1|Name=mRNA_Ecto-sp13_S_contig792.19202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2767bp|location=Sequence derived from alignment at Ecto-sp13_S_contig792:18155..20921+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATACGATTAAGCGGACGTGTTCGCCCGCTGGCGACGGCGACGGAGC
AACTCCAACGGGCCGTGCTACCACAAAGAGCAACAGCCACGGCAGCGGCA
GTACCAGCGGACAGGCACCGGTCGACAAAAACGCGCACGGGGGAAATCAG
AGCGAAAGCGCGGTCTACAAAGCTCTCGGCCTGGTGTGCAGGAGTGGGTT
TGACAACGTGGGTTGCGAGTCGACTCTAAGCCTCGTGTGCGTTTCGTACT
GCAACATCCTGCGGGAGAGTCTGGGTTGGAAATTGACCGTACAGCGAAGC
ACGCCAGCTCGCTTCATCAACCTCCTTCACCCCGCTGCTGACGCTGGTGC
GAACGAGGGGCGTTGTGACAGGATTCAAGTTCCAGTGGCAATCCATCGTC
TCACGTAAGCATCGTGGTCATCACGTCGGTCGTGCACTCTCTGTACGAAT
GATATTCTTCAGCAGTTTCAGCAGAATCTTTTCCGGGGGAAGGAAGTACT
CAACGTACTTCCCACTGAGTGCAAGAACCCCGTTCGGGATAGCACCCCAG
TCAAGGCATGATGTTAAAGGCTTCCTTGTAGAAACTGCTTTCAAGCTGCT
GTAGGTTAATAGGTAAAGTAATTCGCCCAATGCCAACATCAACGCAAGGA
CGCTCATGCCGCCCGTAAGTTTTGATCCGGCGGGATGTTACGTGTAACAT
GAATAATGCATACAGTCAATAGGGTTGACATGTGCTCGACGCTATCGCAT
CAATCGGAGGAGACTCCCAGAGGGCCTTGTCTTTCTTCGTAAAATTCATT
CCGCGATTGAGAAAAAAGCACCATGTAGAGGCTACGGCTTATTTCGTTGA
AGAACTGCTGTTGTTGTCTATTTGTCCAAGATTGTCATTTTGAACTCCGG
GAACATGTTCACGACATTGCGAGTACGCCGTAGCAGTTCGAAGCACCGGG
AAGACAGTGCCTACTCCAGCCCCACTCCGGTCCGTTTTGTTTCATGTTCT
TTGCGTATTTCTTGACGCAACAGATACGACCTGCAGGACTTCCCGACCGA
TGTGGTTTGGCCTCGCGACCTTCGTCGCTTATCTTTCGGCGATAATTTCA
ACGGCAGCATCGAGGATGTGCGATGGCCCGCCCGGCTGGAGGTCAGTCCT
TGCCCCCATCTTAGCTTGGCCGGCCACCACTCTTTGCGAGGAACTCAGTC
TGAAGCTTTCCCTCGCTGCAACGCTTGCTTGCATCGAATACCTTTCGTTG
TAAACGGCGATGCGCGCAGGTTATGTGGCTAGGCCAGAGCTTCAATCACC
CTGTGGCGAATGTCGAGTGGCCGGCATCCTTGAAACAGCTAAGGTTTGGG
CGCGCCTTCGATCAAGACGTCGAGCGTGTGCGATGGCCGAATGATCTCGA
GGTACAGTGGAGATAGGTAGACAATAAATGAAAGCCGGAGGGGGGGGGGG
GCAAGAAGGATGCATGCAGTCAAGATCCTTCCAAACTCCGAACTCGAGCT
TGAGGTGTTGTGATTGAGCGTGGTCACAGAACCCTCGATGTAGGATGGAT
CTGAAGGGGTCTCAGGCCTGGCTCGAATGGGATCCCACTCCTAATCATCC
TGCACCATCTAAGCCAAGCCCCAACCACGCCCCCCGCCCCCCCCCCCACC
CTCGTCGGGCAGCAACTGGTCTTTGGGCACCAGTTCAATCGCCCCATCGC
CGGGATGAAAGAGTGGCCGCCTTCGCTCCTCGTACTTTCGTTCGGCCACG
CCTTCAACCAGGGCGTTGCCGGCGTAGCCCTACCTCCTCGCCTGGAGGTA
AGTCGTGTCGCGTCGTGCTGTATTCGTTTTTTTTTTGTCGTTTTTTTTGC
CGAGTGTGGCCTTTTGTGTGCGTGTATTCGAATGTAGGTGATTTGCTGTA
AACATCTGTAGTGAGCTGCTCGCCTTTTCGCCTTTAAGATGGGGTTCCAG
AATATCAGGGATGGAACATGAACGCAGTTATCCTCGCAAAACACGGCAGC
CTTCGGCACAAGACGTACGGTAGCATGGACACGATCCAAGTCAAGATGCC
GCTAACACACACTCAACGTTCGCGTTTCAACGGACCGAATATTCTCCCCT
TTCCCCCTACGCTCTACACATGTGTCGGAGCAGTTCCTGGAGTTCGGGCA
GGACTTCGACCACTCGATCGACGAGCTTTCCCTGCCGCCCACACTTCAGC
ACATAAGATTCTCCCACAAGTTCGACCAGAACCTGGACCAGGCTTCCTGG
CCGCGGTCCCTACGTACCGTGTGGCTTTGCGGCACCTTCGCCCAGCCGAT
CAGGGACGTCGTGTGGCCGGCGGCCCTCAAGGTCGGGTGGGGTAGGGAGG
CCCGCGTCGATTTGCTGTGCCGCTCGCTTTGAGGAAGGCGGCCCTGAGTC
TTGGGAGCAGGCGAGGCAGCCGTACAGAACGCCTCCAGGCATTCAAAACA
TGAAGTATCAGATCGAGGCAAGGCTCAGGTTATTCTTGCGTCGCCACCAC
CGTCGCGCACAGGTTTTGTCAAGCAGCTCGGTCCTGATCCTCAGTCGCTG
GCTTAGGTGCCCAAGGGTGAGAAGAGCGTTTCGATGTCTGTCACGTAATA
CTAGTTCCGCCGCCCCCCCCTCTTTGCTGTACCGACGACAGGTGCTTGCT
CTGCCAGCGAGGTTTGGGAGACAGGGAGAACACGAAGATGGCGATGATGA
TGATGATGATCAATGGCGGGCAGTTCTGCCCGTCGGCTGCCGGCTTCAGC
GAGCAGAGTGCGGCTAG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig792:18155..20921+

>mRNA_Ecto-sp13_S_contig792.19202.1 ID=mRNA_Ecto-sp13_S_contig792.19202.1|Name=mRNA_Ecto-sp13_S_contig792.19202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1113bp|location=Sequence derived from alignment at Ecto-sp13_S_contig792:18155..20921+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATACGATTAAGCGGACGTGTTCGCCCGCTGGCGACGGCGACGGAGC
AACTCCAACGGGCCGTGCTACCACAAAGAGCAACAGCCACGGCAGCGGCA
GTACCAGCGGACAGGCACCGGTCGACAAAAACGCGCACGGGGGAAATCAG
AGCGAAAGCGCGGTCTACAAAGCTCTCGGCCTGGTGTGCAGGAGTGGGTT
TGACAACGTGGGTTGCGAGTCGACTCTAAGCCTCGTGTGCGTTTCGTACT
GCAACATCCTGCGGGAGAGTCTGGGTTGGAAATTGACCGTACAGCGAAGC
ACGCCAGCTCGCTTCATCAACCTCCTTCACCCCGCTGCTGACGCTGGTGC
GAACGAGGGGCGTTGTGACAGGATTCAAGTTCCAGTGGCAATCCATCGTC
TCACATACGACCTGCAGGACTTCCCGACCGATGTGGTTTGGCCTCGCGAC
CTTCGTCGCTTATCTTTCGGCGATAATTTCAACGGCAGCATCGAGGATGT
GCGATGGCCCGCCCGGCTGGAGGTTATGTGGCTAGGCCAGAGCTTCAATC
ACCCTGTGGCGAATGTCGAGTGGCCGGCATCCTTGAAACAGCTAAGGTTT
GGGCGCGCCTTCGATCAAGACGTCGAGCGTGTGCGATGGCCGAATGATCT
CGAGCAACTGGTCTTTGGGCACCAGTTCAATCGCCCCATCGCCGGGATGA
AAGAGTGGCCGCCTTCGCTCCTCGTACTTTCGTTCGGCCACGCCTTCAAC
CAGGGCGTTGCCGGCGTAGCCCTACCTCCTCGCCTGGAGTTCCTGGAGTT
CGGGCAGGACTTCGACCACTCGATCGACGAGCTTTCCCTGCCGCCCACAC
TTCAGCACATAAGATTCTCCCACAAGTTCGACCAGAACCTGGACCAGGCT
TCCTGGCCGCGGTCCCTACGTACCGTGTGGCTTTGCGGCACCTTCGCCCA
GCCGATCAGGGACGTCGTGTGGCCGGCGGCCCTCAAGGTGCTTGCTCTGC
CAGCGAGGTTTGGGAGACAGGGAGAACACGAAGATGGCGATGATGATGAT
GATGATCAATGGCGGGCAGTTCTGCCCGTCGGCTGCCGGCTTCAGCGAGC
AGAGTGCGGCTAG