mRNA_Ecto-sp13_S_contig79157.19196.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig79157.19196.1
Unique NamemRNA_Ecto-sp13_S_contig79157.19196.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig79157.19196.1 vs. uniprot
Match: D7FUG7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUG7_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 5.040e-39
Identity = 77/123 (62.60%), Postives = 80/123 (65.04%), Query Frame = 1 
Query:    1 ALQEPDLAAYMASLRAAGVPNHRSSTDXXXXXXXXXXXXXXXXXXXXXXXLNKRSFGKRKRRQQERPVCTWPKCNKPVGHLTGGCYRRIKSQRKAQKXXXXXXXXXXXXTSRTTARRPAAPDG 369
            AL EPDLAA MAS RAA VPNHRSS D                        N+R FGKRKRRQ+ERPVCTWPKC+KPVGHL G CYRRIKSQRKAQK     XX     TSRTTA RPAAPDG
Sbjct:   33 ALTEPDLAACMASRRAADVPNHRSSNDDDAAVTRGTPSSFSNEESFSSSASNERGFGKRKRRQRERPVCTWPKCSKPVGHLIGRCYRRIKSQRKAQKERRAHXXKKRAKTSRTTACRPAAPDG 155
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig79157.19196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUG7_ECTSI5.040e-3962.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig79157contigEcto-sp13_S_contig79157:253..621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size369
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464062.642848-CDS-Ecto-sp13_S_contig79157:252..5911681464062.642848-CDS-Ecto-sp13_S_contig79157:252..591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig79157 253..591 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464062.654878-UTR-Ecto-sp13_S_contig79157:591..6211681464062.654878-UTR-Ecto-sp13_S_contig79157:591..621Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig79157 592..621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig79157.19196.1prot_Ecto-sp13_S_contig79157.19196.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig79157 253..591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig79157.19196.1

>prot_Ecto-sp13_S_contig79157.19196.1 ID=prot_Ecto-sp13_S_contig79157.19196.1|Name=mRNA_Ecto-sp13_S_contig79157.19196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MASLRAAGVPNHRSSTDDEAAATCGTPSSSSNEESFSSSTLNKRSFGKRK
RRQQERPVCTWPKCNKPVGHLTGGCYRRIKSQRKAQKERRAQRKKKRAKT
SRTTARRPAAPDG
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mRNA from alignment at Ecto-sp13_S_contig79157:253..621-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig79157.19196.1 ID=mRNA_Ecto-sp13_S_contig79157.19196.1|Name=mRNA_Ecto-sp13_S_contig79157.19196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79157:253..621- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTTACAGGAGCCGGACCTTGCAGCTTACATGGCCAGCCTGAGGGCAGC
TGGCGTGCCGAACCACCGCAGCAGCACTGACGACGAAGCTGCTGCCACCT
GCGGTACGCCCTCGTCATCTTCCAATGAGGAGAGTTTCTCCTCGTCTACT
TTGAACAAGCGTAGCTTTGGCAAGCGGAAGAGGCGGCAGCAGGAGCGACC
GGTGTGCACGTGGCCCAAGTGCAACAAACCAGTCGGTCACCTGACCGGCG
GGTGCTATCGAAGAATCAAGTCACAGCGAAAAGCCCAGAAGGAGCGGCGG
GCTCAGCGCAAGAAGAAACGAGCCAAGACCTCCAGGACCACCGCGCGCCG
CCCGGCCGCCCCGGACGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig79157:253..621-

>mRNA_Ecto-sp13_S_contig79157.19196.1 ID=mRNA_Ecto-sp13_S_contig79157.19196.1|Name=mRNA_Ecto-sp13_S_contig79157.19196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79157:253..621- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAGCCTGAGGGCAGCTGGCGTGCCGAACCACCGCAGCAGCACTGA
CGACGAAGCTGCTGCCACCTGCGGTACGCCCTCGTCATCTTCCAATGAGG
AGAGTTTCTCCTCGTCTACTTTGAACAAGCGTAGCTTTGGCAAGCGGAAG
AGGCGGCAGCAGGAGCGACCGGTGTGCACGTGGCCCAAGTGCAACAAACC
AGTCGGTCACCTGACCGGCGGGTGCTATCGAAGAATCAAGTCACAGCGAA
AAGCCCAGAAGGAGCGGCGGGCTCAGCGCAAGAAGAAACGAGCCAAGACC
TCCAGGACCACCGCGCGCCGCCCGGCCGCCCCGGACGGG
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