mRNA_Ecto-sp13_S_contig7914.19195.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7914.19195.1
Unique NamemRNA_Ecto-sp13_S_contig7914.19195.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7914.19195.1 vs. uniprot
Match: A0A0J8B2W0_BETVV (Uncharacterized protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B2W0_BETVV)

HSP 1 Score: 69.7 bits (169), Expect = 2.800e-9
Identity = 47/207 (22.71%), Postives = 78/207 (37.68%), Query Frame = 1 
Query:  571 IITNSWQGKHVIRNEPGMPRRQFLDGLHTILNSPDKAARQDASQAMFNCNTTAFDAAPASIQHMTVGDQGDPIVPNRNVNRSIEGIRQDRHLGAAVRNRDFDFRGGNYSTGDQVDATGDDVPDDTKGREATAHGDTEDGDDGNEQVQAMVREMMHKAGFPDDAYDMSMLSEATAASHAAGLPQEDEEPFELCDYCRNRGFAACMKCL 1191
            +I + WQ  H +R E  M R +F + +  ++ S D   R  A++ +F+ +          I+ +T GD GDPI+    V+RS+ GI QDR                                                    + +  A     +H   + +       +S+           +++E P ELCD+C+ RG A CM+CL
Sbjct:  156 LIAHGWQNNHTVRYERPMGRNRFFELMRMLMMSDDPKCRLRANEDLFHASPYGG-TDKVRIESLTSGDIGDPIIHRDGVDRSVPGIHQDR----------------------------------------------------DPRFDAQRPHWIHHRSYEEGGNQPGAVSDV----------RKEEHPIELCDFCKPRGRACCMRCL 299
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7914.19195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0J8B2W0_BETVV2.800e-922.71Uncharacterized protein (Fragment) n=1 Tax=Beta vu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7914contigEcto-sp13_S_contig7914:260..2244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1960
Hectar predicted targeting categoryother localisation
Exons2
Cds size831
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464062.5613914-UTR-Ecto-sp13_S_contig7914:259..9621681464062.5613914-UTR-Ecto-sp13_S_contig7914:259..962Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7914 260..962 -
1681464062.6109533-UTR-Ecto-sp13_S_contig7914:1818..22441681464062.6109533-UTR-Ecto-sp13_S_contig7914:1818..2244Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7914 1819..2244 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464062.58104-CDS-Ecto-sp13_S_contig7914:962..16511681464062.58104-CDS-Ecto-sp13_S_contig7914:962..1651Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7914 963..1651 -
1681464062.5993564-CDS-Ecto-sp13_S_contig7914:1676..18181681464062.5993564-CDS-Ecto-sp13_S_contig7914:1676..1818Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7914 1677..1818 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7914.19195.1prot_Ecto-sp13_S_contig7914.19195.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7914 963..1818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7914.19195.1

>prot_Ecto-sp13_S_contig7914.19195.1 ID=prot_Ecto-sp13_S_contig7914.19195.1|Name=mRNA_Ecto-sp13_S_contig7914.19195.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=277bp
MGRSHRVQAAQHQEAERRHKRERERTCGDPPEPKGAHRGDRRRSARFFII
TNSWQGKHVIRNEPGMPRRQFLDGLHTILNSPDKAARQDASQAMFNCNTT
AFDAAPASIQHMTVGDQGDPIVPNRNVNRSIEGIRQDRHLGAAVRNRDFD
FRGGNYSTGDQVDATGDDVPDDTKGREATAHGDTEDGDDGNEQVQAMVRE
MMHKAGFPDDAYDMSMLSEATAASHAAGLPQEDEEPFELCDYCRNRGFAA
CMKCLLRRGNSGKKVVRTGQLAFFSD*
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mRNA from alignment at Ecto-sp13_S_contig7914:260..2244-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7914.19195.1 ID=mRNA_Ecto-sp13_S_contig7914.19195.1|Name=mRNA_Ecto-sp13_S_contig7914.19195.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1985bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7914:260..2244- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGTGCTGGCGGCAACGGCAGTAACACGGGCGGCAAGGGTGTTTGGGGGG
GCGCTAAGAGTGTCATTCGCAGGGCTCATGACTCTGCGCAAGATCGGGTG
CCCAATTATCACTTCCAACCGGACCGCAAGGTCTACCGTAACGGCAAACT
TCACGGCATCCGGGGGAACGACACAGCCGGAGAACCACGTAAGATTTTCC
ACGACCCGGTTCCTGGGCATGATGTCGAGCCAGTGACAGATCCAAGCACC
GGACAATCCCGGCAGGTCCGCGACCCTCAAGGCATCCCGCGAACGGACGA
ACAGGTGCGCCAGCTTGGCGATTCGGCCCACACTGAAATCTTTGATGAGC
GGTATCCTCAATTCTGGCGTGAACAAGGAAACGTCGGTGGTGAGAGTGGG
GAGCAACTTCCTACCAGCTGCGGCCAATGGGCCGGAGTCATCGAGTCCAA
GCTGCGCAACACCAAGAAGCTGAGCGGCGTCACAAACGCGAACGCGAGCG
CACATGCGGAGATCCACCTGAGCCAAAGGGGGCGCACCGTGGTGATCGAC
GTAGGTCCGCACGTTTTTGTCGCGACGGGACATGGTGATCAAGTCATCAT
AACAAACTCATGGCAGGGCAAGCACGTCATCCGGAACGAACCAGGCATGC
CACGCCGCCAGTTCCTGGACGGACTCCACACAATCCTCAACTCGCCGGAT
AAGGCGGCGCGACAGGATGCCTCCCAGGCCATGTTCAACTGCAATACGAC
GGCTTTCGACGCAGCTCCTGCGAGCATCCAGCACATGACGGTCGGCGATC
AAGGCGATCCCATTGTCCCGAACCGCAACGTCAACCGCAGCATCGAGGGC
ATTCGACAGGACCGTCACCTGGGCGCCGCCGTCCGCAATCGAGACTTTGA
TTTCCGCGGCGGCAACTACAGTACCGGAGACCAGGTGGACGCCACCGGAG
ATGACGTTCCGGACGACACTAAGGGCAGAGAGGCTACGGCGCACGGCGAC
ACTGAAGACGGCGACGACGGCAACGAACAGGTGCAGGCTATGGTCCGCGA
GATGATGCACAAAGCTGGTTTCCCGGACGACGCCTACGATATGAGCATGC
TGAGCGAGGCAACGGCTGCGTCACATGCGGCCGGGCTGCCTCAAGAAGAT
GAGGAGCCATTCGAGCTGTGTGATTATTGCCGTAACCGCGGGTTTGCAGC
GTGCATGAAGTGCCTTCTCAGACGCGGAAATAGTGGCAAGAAGGTCGTTC
GCACAGGCCAGCTGGCCTTTTTCTCGGACTAATACCTCTCGGAGAATTGA
ATCCGAAAACGTTTGTTTTTTGGTGACCAATTTGTTTGACTGGAGGCGGG
GCGTTGACGACGGGCTTTGGAACTTCTTATGCACTGTCATCGTCGCCACG
ATTGGTGTCTCTGAGTATTGCTACCTGTGTTTTTTGGCTCTCGGCAAATG
CCAGTCCCGAGTATATATTAAGCAACGTCAAATTTATGTTTTTTTCTTTT
TGTCATCCATGTCGTCGGCCCCCCAATAGTCAATGTGTCTCTTTACGTTT
CTTCGTATCGGACTTCGATTATGATGCCCGGCTGTACGTCTGCTGTATTA
TCGAGGCTGAAGATGTTTTGGGAGGCCGAACAGAAGTCCTTGCCATGTAA
TGAGCTCTTGTAAATTGTCGGATGGCGAAAAGCAGAATAAAACGAAACAG
TTGAGGCTTCGTTTGGGGGCGTGAAGCGTCGTTGTGGAATACTGAGCTTT
CTTGTCGGCATTGTTTGTGGTACTTGGTGAAGATATCGATCTGGGGGTGA
TCTATGGGGGATACACAGCTGAGGTGATGGATCTGTCATTTCATGTCGCG
GGGACCCGATTCCCTGTGCCGAACCACTTCTTCTTCAATGATACACACGA
ATGAATCAAGTTTATGCGCCAGAGGCGCCACCGACAAGAATCTGCAGCGC
GTTAACTTAGGTCACGCCCCCGCACAGAAACAGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7914:260..2244-

>mRNA_Ecto-sp13_S_contig7914.19195.1 ID=mRNA_Ecto-sp13_S_contig7914.19195.1|Name=mRNA_Ecto-sp13_S_contig7914.19195.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=831bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7914:260..2244- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCCGGAGTCATCGAGTCCAAGCTGCGCAACACCAAGAAGCTGAGCG
GCGTCACAAACGCGAACGCGAGCGCACATGCGGAGATCCACCTGAGCCAA
AGGGGGCGCACCGTGGTGATCGACGTAGGTCCGCACGTTTTTTCATCATA
ACAAACTCATGGCAGGGCAAGCACGTCATCCGGAACGAACCAGGCATGCC
ACGCCGCCAGTTCCTGGACGGACTCCACACAATCCTCAACTCGCCGGATA
AGGCGGCGCGACAGGATGCCTCCCAGGCCATGTTCAACTGCAATACGACG
GCTTTCGACGCAGCTCCTGCGAGCATCCAGCACATGACGGTCGGCGATCA
AGGCGATCCCATTGTCCCGAACCGCAACGTCAACCGCAGCATCGAGGGCA
TTCGACAGGACCGTCACCTGGGCGCCGCCGTCCGCAATCGAGACTTTGAT
TTCCGCGGCGGCAACTACAGTACCGGAGACCAGGTGGACGCCACCGGAGA
TGACGTTCCGGACGACACTAAGGGCAGAGAGGCTACGGCGCACGGCGACA
CTGAAGACGGCGACGACGGCAACGAACAGGTGCAGGCTATGGTCCGCGAG
ATGATGCACAAAGCTGGTTTCCCGGACGACGCCTACGATATGAGCATGCT
GAGCGAGGCAACGGCTGCGTCACATGCGGCCGGGCTGCCTCAAGAAGATG
AGGAGCCATTCGAGCTGTGTGATTATTGCCGTAACCGCGGGTTTGCAGCG
TGCATGAAGTGCCTTCTCAGACGCGGAAATAGTGGCAAGAAGGTCGTTCG
CACAGGCCAGCTGGCCTTTTTCTCGGACTAA
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