mRNA_Ecto-sp13_S_contig7912.19194.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7912.19194.1
Unique NamemRNA_Ecto-sp13_S_contig7912.19194.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7912.19194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7912contigEcto-sp13_S_contig7912:4343..5003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size546
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_004660.1
Cds size249
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464062.4895053-UTR-Ecto-sp13_S_contig7912:4342..46391681464062.4895053-UTR-Ecto-sp13_S_contig7912:4342..4639Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7912 4343..4639 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464062.5083132-CDS-Ecto-sp13_S_contig7912:4639..47031681464062.5083132-CDS-Ecto-sp13_S_contig7912:4639..4703Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7912 4640..4703 -
1681464062.5214338-CDS-Ecto-sp13_S_contig7912:4818..50031681464062.5214338-CDS-Ecto-sp13_S_contig7912:4818..5003Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7912 4819..5003 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7912.19194.1prot_Ecto-sp13_S_contig7912.19194.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7912 4640..5003 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7912.19194.1

>prot_Ecto-sp13_S_contig7912.19194.1 ID=prot_Ecto-sp13_S_contig7912.19194.1|Name=mRNA_Ecto-sp13_S_contig7912.19194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
MLSLIKKHRREPTAVSSVRGNCRSYWLVGGLSMCGVMGSSEHYLGFQVDC
FKDRLRFPNARRSRGLCCRWGRGNNIDRSSTD*
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mRNA from alignment at Ecto-sp13_S_contig7912:4343..5003-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7912.19194.1 ID=mRNA_Ecto-sp13_S_contig7912.19194.1|Name=mRNA_Ecto-sp13_S_contig7912.19194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=661bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7912:4343..5003- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTTCGCTAATCAAGAAACACAGAAGGGAGCCTACAGCGGTGTCTTC
CGTTCGAGGCAACTGTCGTTCCTATTGGTTAGTGGGAGGTTTGTCCATGT
GTGGAGTTATGGGGTCGAGCGAACACTACCTGGGCTTCCAGGTTGACTGC
TTCAAGGACAGATTGCGGTTCCCCAACGCGCGAAGGTGAGGTTGGGCCAT
CCGTCCCCCCGGCGGCGTGCTTCGCATACCCCCCCTCCCGCTAAGGCGTG
CTGCGTGTAAATCCACCACCACTTAATCCTCCTACTGCTTTGTCGATGAG
GTCGCGTGGTTTGTGTTGCCGTTGGGGGCGTGGAAATAACATCGATCGAA
GCTCCACCGACTAGGTAAGCTTGTTTACTCCACAGGTGGAGCAGTAACAA
GAAATCTACTTTCTACCGGGGTAATTAGTCAACATTAACATTCCATGATG
TGCCGAAACGTGTCTGCATACATACCGAAACGGGAACAGTAGAACACCGG
TAACGGTTGTCAGCCCTTGCTGTTTCCTTTTTTTGTCGAATAGGCTGTAC
GTGGAACAGAGACATACCCGACGTTTCTTCCGCCGGACACAGGTCGACCC
CTCGTGGCACGTACGCGAGCGATCGATCAGGTGTGGCGAGCTACTTTTCT
CAGAACACACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7912:4343..5003-

>mRNA_Ecto-sp13_S_contig7912.19194.1 ID=mRNA_Ecto-sp13_S_contig7912.19194.1|Name=mRNA_Ecto-sp13_S_contig7912.19194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7912:4343..5003- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTTCGCTAATCAAGAAACACAGAAGGGAGCCTACAGCGGTGTCTTC
CGTTCGAGGCAACTGTCGTTCCTATTGGTTAGTGGGAGGTTTGTCCATGT
GTGGAGTTATGGGGTCGAGCGAACACTACCTGGGCTTCCAGGTTGACTGC
TTCAAGGACAGATTGCGGTTCCCCAACGCGCGAAGGTCGCGTGGTTTGTG
TTGCCGTTGGGGGCGTGGAAATAACATCGATCGAAGCTCCACCGACTAG
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