mRNA_Ecto-sp13_S_contig79113.19192.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig79113.19192.1
Unique NamemRNA_Ecto-sp13_S_contig79113.19192.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig79113.19192.1 vs. uniprot
Match: D7FSY8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSY8_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 6.420e-43
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:    1 PRSMLLSRALHPIYFLFIAPPSAAAIAWTRINGEFDVLSRSLYFIAGFLYMFFVLGNSSFLRTASFSVAWWAYSFP 228
            P+SMLLSRALHPIYFLFIAPPSAAAIAWTRINGEFDVLSRSLYFIAGFLYMFFVLGNSSFLRTASFSVAWWAYSFP
Sbjct:  409 PKSMLLSRALHPIYFLFIAPPSAAAIAWTRINGEFDVLSRSLYFIAGFLYMFFVLGNSSFLRTASFSVAWWAYSFP 484
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BLAST of mRNA_Ecto-sp13_S_contig79113.19192.1 vs. uniprot
Match: D7G1R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1R0_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.810e-40
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 1 
Query:    7 SMLLSRALHPIYFLFIAPPSAAAIAWTRINGEFDVLSRSLYFIAGFLYMFFVLGNSSFLRTASFSVAWWAYSFP 228
            SMLLSRALHPIYFLFIAPPSAAAIAWTRI GEFD LSRSLYFIAGFLYMFFVLGNSSFLRTASFSVAWWAYSFP
Sbjct:  360 SMLLSRALHPIYFLFIAPPSAAAIAWTRITGEFDDLSRSLYFIAGFLYMFFVLGNSSFLRTASFSVAWWAYSFP 433
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BLAST of mRNA_Ecto-sp13_S_contig79113.19192.1 vs. uniprot
Match: A0A0D9WKB1_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9WKB1_9ORYZ)

HSP 1 Score: 89.4 bits (220), Expect = 5.800e-19
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    1 PRSMLLSRALHPIYFLFIAPPSAAAIAWTRINGEFDVLSRSLYFIAGFLYMFFVLGNSSFLRTASFSVAWWAYSFPCERA 240
            P ++ L R LHP++FLF+A PS AA+AW R+ GEFD  +R  YF+A FLY+        F R   FS+AWWAY+FP   A
Sbjct:  369 PTNVQLPRELHPVFFLFVAAPSVAAMAWARLAGEFDAAARMAYFVAIFLYVSLAARVDMFFRGVRFSLAWWAYTFPVTSA 448
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BLAST of mRNA_Ecto-sp13_S_contig79113.19192.1 vs. uniprot
Match: A0A811RU38_9POAL (Hypothetical protein n=3 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811RU38_9POAL)

HSP 1 Score: 89.0 bits (219), Expect = 7.900e-19
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    1 PRSMLLSRALHPIYFLFIAPPSAAAIAWTRINGEFDVLSRSLYFIAGFLYMFFVLGNSSFLRTASFSVAWWAYSFPCERA 240
            P ++ L R LHP++FLF+A PS A++AW RI+GEF + +R  Y++A FLY   V   S F R  SFS+AWWAY+FP   A
Sbjct:  358 PTNVPLPRDLHPVFFLFVATPSVASVAWARISGEFGLGARVAYYVALFLYASLVARVSFFFRGVSFSLAWWAYTFPVTSA 437
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BLAST of mRNA_Ecto-sp13_S_contig79113.19192.1 vs. uniprot
Match: A0A0A9HG11_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9HG11_ARUDO)

HSP 1 Score: 84.7 bits (208), Expect = 1.380e-18
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:    1 PRSMLLSRALHPIYFLFIAPPSAAAIAWTRINGEFDVLSRSLYFIAGFLYMFFVLGNSSFLRTASFSVAWWAYSFPCERA 240
            P ++ L + LHP++FLF+A PS A++AW +ING FD  +R  YFIA FLYM   +   +F R   FS+AWWAY+FP   A
Sbjct:   12 PTNVTLPKELHPVFFLFVAAPSVASMAWAKINGHFDSGARIAYFIALFLYMSLAV-RINFFRGFRFSLAWWAYTFPMTGA 90
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BLAST of mRNA_Ecto-sp13_S_contig79113.19192.1 vs. uniprot
Match: UPI001CC6B173 (S-type anion channel SLAH3-like n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC6B173)

HSP 1 Score: 87.4 bits (215), Expect = 1.790e-18
Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:    1 PRSMLLSRALHPIYFLFIAPPSAAAIAWTRINGEFDVLSRSLYFIAGFLYMFFVLGNSSFLRTASFSVAWWAYSFPCERA 240
            P S  L + LHP++FLF+APPS A++AW +I GEFD  SR  YFIA FLY F +    +F R   FS+AWWAY+FP   A
Sbjct:  224 PTSETLPKELHPVFFLFVAPPSVASMAWAQIQGEFDYGSRIAYFIALFLY-FSLAVRINFFRGFRFSLAWWAYTFPMTGA 302
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BLAST of mRNA_Ecto-sp13_S_contig79113.19192.1 vs. uniprot
Match: A0A1D6NIB8_MAIZE (S-type anion channel SLAH3 n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6NIB8_MAIZE)

HSP 1 Score: 87.8 bits (216), Expect = 2.070e-18
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    1 PRSMLLSRALHPIYFLFIAPPSAAAIAWTRINGEFDVLSRSLYFIAGFLYMFFVLGNSSFLRTASFSVAWWAYSFPCERA 240
            P +M L + LHP++FLF+A PS A++AW +ING+FD  +R  YFIA FLYM   +   +F R   FS+AWWAY+FP   A
Sbjct:  442 PTNMTLPKELHPVFFLFVAAPSVASMAWAKINGQFDAGARIAYFIALFLYMSLAV-RINFFRGFRFSLAWWAYTFPMTGA 520
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BLAST of mRNA_Ecto-sp13_S_contig79113.19192.1 vs. uniprot
Match: A0A1Q3DH62_CEPFO (C4dic_mal_tran domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3DH62_CEPFO)

HSP 1 Score: 87.0 bits (214), Expect = 2.810e-18
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:    1 PRSMLLSRALHPIYFLFIAPPSAAAIAWTRINGEFDVLSRSLYFIAGFLYMFFVLGNSSFLRTASFSVAWWAYSFP 228
            P S  L + LHP+Y +FIA PSAA+IAW  I GEFD LSR+LYFIA FLY   V+   +F     FSVAWW+Y+FP
Sbjct:  245 PTSEALPKELHPVYSMFIAAPSAASIAWKTIYGEFDALSRTLYFIALFLYASLVV-RINFFTGFRFSVAWWSYTFP 319
[Close]
BLAST of mRNA_Ecto-sp13_S_contig79113.19192.1 vs. uniprot
Match: A0A2T7DJI6_9POAL (Uncharacterized protein n=7 Tax=Paniceae TaxID=147428 RepID=A0A2T7DJI6_9POAL)

HSP 1 Score: 87.4 bits (215), Expect = 2.830e-18
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    1 PRSMLLSRALHPIYFLFIAPPSAAAIAWTRINGEFDVLSRSLYFIAGFLYMFFVLGNSSFLRTASFSVAWWAYSFPCERA 240
            P ++ L + LHP++FLF+A PS A++AW RING+FD  +R  YFIA FLYM   +   +F R   FS+AWWAY+FP   A
Sbjct:  446 PTNVTLPKELHPVFFLFVAAPSVASMAWARINGQFDAGARIAYFIALFLYMSLAV-RINFFRGFRFSLAWWAYTFPMTGA 524
[Close]
BLAST of mRNA_Ecto-sp13_S_contig79113.19192.1 vs. uniprot
Match: A0A1Q3D3M6_CEPFO (C4dic_mal_tran domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3D3M6_CEPFO)

HSP 1 Score: 87.0 bits (214), Expect = 3.740e-18
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:    1 PRSMLLSRALHPIYFLFIAPPSAAAIAWTRINGEFDVLSRSLYFIAGFLYMFFVLGNSSFLRTASFSVAWWAYSFP 228
            P S  L + LHP+Y +FIA PSAA+IAW  I GEFD LSR+LYFIA FLY   V+   +F     FSVAWW+Y+FP
Sbjct:  368 PTSEALPKELHPVYSMFIAAPSAASIAWKTIYGEFDALSRTLYFIALFLYASLVV-RINFFTGFRFSVAWWSYTFP 442
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig79113.19192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSY8_ECTSI6.420e-4398.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G1R0_ECTSI1.810e-4097.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0D9WKB1_9ORYZ5.800e-1950.00Uncharacterized protein n=1 Tax=Leersia perrieri T... [more]
A0A811RU38_9POAL7.900e-1951.25Hypothetical protein n=3 Tax=Miscanthus lutariorip... [more]
A0A0A9HG11_ARUDO1.380e-1850.00Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
UPI001CC6B1731.790e-1853.75S-type anion channel SLAH3-like n=1 Tax=Telopea sp... [more]
A0A1D6NIB8_MAIZE2.070e-1851.25S-type anion channel SLAH3 n=2 Tax=Zea mays TaxID=... [more]
A0A1Q3DH62_CEPFO2.810e-1857.89C4dic_mal_tran domain-containing protein n=1 Tax=C... [more]
A0A2T7DJI6_9POAL2.830e-1851.25Uncharacterized protein n=7 Tax=Paniceae TaxID=147... [more]
A0A1Q3D3M6_CEPFO3.740e-1857.89C4dic_mal_tran domain-containing protein n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig79113contigEcto-sp13_S_contig79113:337..585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score147.5
Seed ortholog evalue2.6e-33
Seed eggNOG ortholog2880.D7FSY8
Model size249
Hectar predicted targeting categorysignal peptide
GOsGO:0000302,GO:0001101,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005253,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006873,GO:0006950,GO:0006970,GO:0006979,GO:0008150,GO:0008308,GO:0008509,GO:0009270,GO:0009414,GO:0009415,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009987,GO:0010033,GO:0010035,GO:0010037,GO:0010118,GO:0010119,GO:0010193,GO:0015075,GO:0015103,GO:0015267,GO:0015318,GO:0015698,GO:0015711,GO:0016020,GO:0016021,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019902,GO:0019903,GO:0022803,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0030104,GO:0031224,GO:0032501,GO:0033993,GO:0034220,GO:0042221,GO:0042493,GO:0042592,GO:0044425,GO:0044464,GO:0046677,GO:0048871,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050878,GO:0050891,GO:0050896,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071702,GO:0071944,GO:0072347,GO:0090332,GO:0097305,GO:0098656,GO:1901700,GO:1902456
Exons1
EggNOG free text desc.voltage-gated anion channel activity
EggNOG OGs28IA4@1,2QQKN@2759
Cds size240
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464062.3981483-CDS-Ecto-sp13_S_contig79113:336..5761681464062.3981483-CDS-Ecto-sp13_S_contig79113:336..576Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig79113 337..576 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464062.4117215-UTR-Ecto-sp13_S_contig79113:576..5851681464062.4117215-UTR-Ecto-sp13_S_contig79113:576..585Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig79113 577..585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig79113.19192.1prot_Ecto-sp13_S_contig79113.19192.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig79113 337..576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig79113.19192.1

>prot_Ecto-sp13_S_contig79113.19192.1 ID=prot_Ecto-sp13_S_contig79113.19192.1|Name=mRNA_Ecto-sp13_S_contig79113.19192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
MLLSRALHPIYFLFIAPPSAAAIAWTRINGEFDVLSRSLYFIAGFLYMFF
VLGNSSFLRTASFSVAWWAYSFPCERAPT*
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mRNA from alignment at Ecto-sp13_S_contig79113:337..585-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig79113.19192.1 ID=mRNA_Ecto-sp13_S_contig79113.19192.1|Name=mRNA_Ecto-sp13_S_contig79113.19192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79113:337..585- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTAGGAGCATGCTCCTGAGCAGAGCGTTACACCCCATCTATTTTCTGTT
CATCGCTCCCCCCTCGGCGGCTGCGATCGCCTGGACGCGCATCAATGGGG
AGTTTGACGTCCTGTCCAGGTCCCTGTACTTCATCGCCGGGTTCCTGTAC
ATGTTCTTTGTGCTGGGCAACTCGAGCTTCCTGCGGACGGCGTCGTTTAG
CGTCGCCTGGTGGGCGTACTCCTTCCCATGTGAGAGGGCCCCTACCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig79113:337..585-

>mRNA_Ecto-sp13_S_contig79113.19192.1 ID=mRNA_Ecto-sp13_S_contig79113.19192.1|Name=mRNA_Ecto-sp13_S_contig79113.19192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79113:337..585- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCTGAGCAGAGCGTTACACCCCATCTATTTTCTGTTCATCGCTCC
CCCCTCGGCGGCTGCGATCGCCTGGACGCGCATCAATGGGGAGTTTGACG
TCCTGTCCAGGTCCCTGTACTTCATCGCCGGGTTCCTGTACATGTTCTTT
GTGCTGGGCAACTCGAGCTTCCTGCGGACGGCGTCGTTTAGCGTCGCCTG
GTGGGCGTACTCCTTCCCATGTGAGAGGGCCCCTACCTAG
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