mRNA_Ecto-sp13_S_contig7911.19191.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7911.19191.1
Unique NamemRNA_Ecto-sp13_S_contig7911.19191.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7911.19191.1 vs. uniprot
Match: A0A6H5K7H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7H2_9PHAE)

HSP 1 Score: 483 bits (1244), Expect = 3.730e-155
Identity = 296/327 (90.52%), Postives = 300/327 (91.74%), Query Frame = 1 
Query:  199 MPIAESHESVGGKFAAATDRARVDAGCGGTKNTPPPGRPAVEKNTPTTRERGGIPLPMAGIPRVAAEGTAAXXXXXXXXXXXXAHPNKSAERAEFGTSAVTFRSTFARGYDHRRRGRAYSSTLPXXXXXXXXXXXXXSSWGGLRDLDGCVVWYTESVDSAAEADIESLASRAESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVCSGDSSRNRVRDRDLSLELCSTWSEEGEEDVLLGLSLARARMTAGKAACSCRETSCFXRFRNTSASFASPRNRNQNPRTVVPLPPPGPLARSELDPRDLALVAEINCMAKGSRDRRGRGAGD 1179
            MP+AE+HESVGGK AAATD A VDAGCGGTKNTPPP  PA EKNTPT RERGGIPLPMA IP VAAEGT A     XXXX   AH +KSAERAEFG+SAVTFRSTFARGYDHRRRGRAYSSTLPXXXXXXXX     S W GLRDLDGCVVWYTESVDSAAEADIESLASRAESXXXXXXXXXXXXXXXXXXXXXXXXXXXX SVCSGDSSRNRVRDRDLSLELCSTWSEEGEEDVLLGLSLARARMTAGKAACSCRETSCFXRFRNTSASFASPRNRNQNPRTVVPLPPPGPLARSELDPRDLALVAEINCMAKGSRDRRGRGAGD
Sbjct:    1 MPVAETHESVGGKLAAATDLAGVDAGCGGTKNTPPPAGPAGEKNTPTARERGGIPLPMAAIPSVAAEGTVAAGEPPXXXXEQPAHADKSAERAEFGSSAVTFRSTFARGYDHRRRGRAYSSTLPXXXXXXXXGVGGGSGWAGLRDLDGCVVWYTESVDSAAEADIESLASRAESXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSVCSGDSSRNRVRDRDLSLELCSTWSEEGEEDVLLGLSLARARMTAGKAACSCRETSCFXRFRNTSASFASPRNRNQNPRTVVPLPPPGPLARSELDPRDLALVAEINCMAKGSRDRRGRGAGD 327
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7911.19191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7H2_9PHAE3.730e-15590.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7911contigEcto-sp13_S_contig7911:2542..6466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1181
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_005780.1
Cds size981
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464062.319957-UTR-Ecto-sp13_S_contig7911:2541..27391681464062.319957-UTR-Ecto-sp13_S_contig7911:2541..2739Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7911 2542..2739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464062.3416352-CDS-Ecto-sp13_S_contig7911:2739..32761681464062.3416352-CDS-Ecto-sp13_S_contig7911:2739..3276Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7911 2740..3276 +
1681464062.3566282-CDS-Ecto-sp13_S_contig7911:5746..59461681464062.3566282-CDS-Ecto-sp13_S_contig7911:5746..5946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7911 5747..5946 +
1681464062.3684278-CDS-Ecto-sp13_S_contig7911:6222..64661681464062.3684278-CDS-Ecto-sp13_S_contig7911:6222..6466Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7911 6223..6466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7911.19191.1prot_Ecto-sp13_S_contig7911.19191.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7911 2740..6466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7911.19191.1

>prot_Ecto-sp13_S_contig7911.19191.1 ID=prot_Ecto-sp13_S_contig7911.19191.1|Name=mRNA_Ecto-sp13_S_contig7911.19191.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=327bp
MPIAESHESVGGKFAAATDRARVDAGCGGTKNTPPPGRPAVEKNTPTTRE
RGGIPLPMAGIPRVAAEGTAAAGERPAAGEEKPAHPNKSAERAEFGTSAV
TFRSTFARGYDHRRRGRAYSSTLPPPPPQAPPGVGGGSSWGGLRDLDGCV
VWYTESVDSAAEADIESLASRAESVDSREDDLDATASTDSEVASTASSTG
GASSVCSGDSSRNRVRDRDLSLELCSTWSEEGEEDVLLGLSLARARMTAG
KAACSCRETSCFCRFRNTSASFASPRNRNQNPRTVVPLPPPGPLARSELD
PRDLALVAEINCMAKGSRDRRGRGAGD
back to top

mRNA from alignment at Ecto-sp13_S_contig7911:2542..6466+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7911.19191.1 ID=mRNA_Ecto-sp13_S_contig7911.19191.1|Name=mRNA_Ecto-sp13_S_contig7911.19191.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3925bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7911:2542..6466+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCACCACATTACTCTACCTAACCGGACGGGGAGAGTGGTGTGTGCTGTG
TACACTCCGGTTGTGGTCCCAGTACAAGTTGAACGAAGGCGGGTTGCTGT
GAACTATTGATTCAAATCCTACCGATCAGCCCTCTCTCCGATGTCGTGTG
CATGATGTGAACACAGGAGAGACTGCGCGCTCCCTGACAAGCAAAAATAT
GCCTATAGCGGAGTCTCACGAAAGCGTCGGCGGAAAGTTTGCAGCGGCTA
CAGACCGGGCCAGAGTTGACGCTGGCTGCGGCGGCACCAAGAACACTCCG
CCGCCCGGGCGTCCGGCGGTGGAAAAGAACACGCCGACAACGAGGGAGAG
AGGCGGTATTCCGTTACCCATGGCAGGGATACCCAGAGTAGCAGCAGAAG
GTACAGCAGCAGCTGGAGAACGTCCAGCAGCGGGAGAAGAAAAACCGGCG
CATCCCAATAAGAGTGCGGAAAGGGCTGAGTTCGGGACTTCTGCGGTCAC
ATTTAGGAGCACATTCGCGCGAGGTTATGACCATCGACGTCGTGGCAGGG
CATACTCATCGACGCTGCCTCCTCCACCACCTCAAGCTCCTCCCGGTGTC
GGCGGAGGTTCTAGCTGGGGAGGGCTTCGGGACCTGGACGGGTGTGTGGT
GTGGTACACGGAAAGCGTTGACTCTGCCGCGGAGGCCGATATCGAGAGCC
TCGCGTCGCGAGCAGAGAGCGTCGACAGCAGAGAGGTGGGGGATGAGCTT
GTGCATCATGACAGAGAAAGAGAGAGAGAGAGAGCAGCAGCAACAGCAGC
AGCAGCAGTAAGGAGTACGTGCGTTGCACGTAGCTAGCTCAGGGGTGCCC
CAAACGTTGAAACCTTGTGTTTGCTGGAATAGCAAAGCATCCTTGTTTTT
GGCATGCTGTGAAAGGAGGGGTTCGTCCTCGACATCGCTGTTCTTCTGCG
GTGCTCCCAGTGCGTAGGCGAGATTGGTGCCGACGCTGGTGTGCGGGCGT
GCTGTCGCTGTTCTGGCCGAGGTCTGCTGTGTCGCACCACCGCCAGGAAA
GCGACAGAACGCACGCACGCCAACACTAGCATAAGGTCACCCTACGTGCT
GGGAGCGCCGAAGAACAACGACGTCGAGGACGACTCCCCCCGTCCACGTT
TGCGTCGACCGAGAGACGTACGCTTTTGGCGGAAGAGAACCCGGGTTTAA
TCATATCCGCCACCCCGGCATCTTTCTCTTTTGGAGAATAGGAGGGAATC
GTCCTCATAATCTGGGAAGGTTGTACCGTTTACGAAGGGGAATCTCCGCA
TATTTTAGTGCATACCATTGGTGTAGTAGCTCATGCGAATCGCAACAAGG
GACAGCATCCCATCCCCGTACACCCAGCGGTACGCGGGCGGTAGCAAGGC
CTTTGTTCAACAACGTCAATGGTTCCTTGAATGTCACAAAACCATACAGT
ACAAAATTCCTCCGACACAACCCAGCAATTCGTTTGAACTACCTCAACGG
CAAAGCCTACCTTTCTGTAACATTCTGAGCTTCATGTTATATTTTCTCAA
ACAGTCTTCATTGGTATACACAGTAACAGGCATTTTTCCTGAGCGCCGAA
AGGGCCGAACGCAGCGCGAGATGACCCCAGTCCCGCACCACGCGTAGTGA
TACCGCTTTTTCGACGTTTTTTTTTCTTCTTGACCCCCCTACAAATGAGC
AGGGGGTCCCACAACGTTAAACGCTGTCCCCAACATTGTTCCACGTGTTC
ATGAACGATCTGTTGGAAGTCTTCGAGGCAGTCTTGAAGGGAGTTCAAGT
AGAGGACACGGAAACTTCGGTGTCAGGAATGCTGTTTGCCGATGATTTTG
TCGGTATGTCGGACACCCCTGAGGGACTGCAAATGCAAAGTGACGCGGCG
AAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAACGTTAAGAAGATTGC
CGTCATGGTATGCAACGAGGACCGGGAGGAACCAGTGGAACGTAGATGGA
AGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTTCACATACCTCGGA
GTAGAGATCGCAAAATACTGCTCGTGGAATGCACACATGTCCAAGGTAGC
GGAAAAGGGCAAAGTACGAGCACGGAAGCTGCAACCAATACTTTCATACC
GGCACCTCGATACACGCATCAAATTGACGGTTTTGAAAAGCGTAATCGTA
CCGCCGCTAGATTACGCCGGAGGAGCATGGGAAGGAAATAAGAAGGTTGT
CGAAGAACTCGAGGCAGCGCAGATGAAATCAGCGAAAATCATCCTAGGAT
GCTCCAAGCACAAGTAATGCAGCCGTCAGGGCAGAGTTGGGGATCCCATC
CCTACGGTCGGGAAGAGACAAAAGAAAGCTGAAATGGCAGTGTCGCATGT
GCGGGATGGGAGAGGAGAGGTTCCCGAGAATAGTGTGGGACGTGGGCAAA
CAAGAAGAGGGGTAGACAACCCACGGAATGGGTCCAGGTTGTAGAGGACG
TATGGAAGGGGTTCGACATCGAGGAAAATTAAACGCTGGAAACGCAGGGT
CTAAAGGGGTTCAAAGAGAAAATATCTGTTGCTTGTGCCGAGAGAGTATA
ACAGAATCTGAGTAAAAAAAAACGAGGATAAGGAGGGTAAAGAGGTGTAC
GGAATGATGAAAGAAGGAATAGGGTTCAAGGATTACCTTCATGGACCAAT
GGGCGCAGGAACAAAATTTAAGGTCAAATTCAGAGCCGGGGACACAGGCC
TTCGAGAACGTCGACGAAGACATAGGACGGTAGACGACGAAGACGACGAG
TTCAAATGTGATTGCGGCTTCGAATGCGAAGACGGTGTTCATGTAGTCGC
GGAATGTCAGTTGTACGAAGAGGAGAGGGAAGTGTACGTGACTGAGCTGG
CAAAAATGCAAGAGAGGTACAGGGAGATGTTTGAGGCATGGAATAGAGAG
GAGAAGACGGTAGCTGTACTGGGGAGTAGGAAGTGGTTTAAAAAGGCGGG
AAGGGAAATCGTTAGGATAGCAGACCAGGGAAGACATTTTTGAGCAACCT
TTGGCAAAGTGGGAAGAAACGATTGGCCCTCGGTGATCGGTCCTGTGGGA
AGAACGCTCCGTCCTCTCGGGGACGCGTGGTCAATAGTCTAACCGCCAAG
GCATGCAAAACATAAGAGTACGCCCCTCCCCCCGCTCCTATAAATTACTT
CACAGGATGACCTTGACGCGACAGCTAGCACGGACAGCGAGGTTGCGAGC
ACCGCGAGCTCGACAGGGGGCGCTAGTTCAGTTTGCAGCGGGGACTCCTC
CCGGAACAGAGTGAGGGACCGAGACCTGTCCCTTGAGTTGTGCTCCACAT
GGAGCGAGGAAGGAGAGGAAGACGTTCTGCTGGGATTGTCCCTCGCGCGA
GCTAGGTGGGCACCAACTGCGTTGCAGCACTGATACGTGCTAGATCGCCT
AGATTTGTATTTTCTAACCCACTCACCCCCTGACGGTCTTGTACCGTTCA
CAGACAGGGCCATGAATCCCTCGGGTGATGGGTACTTGAAAGCGCACACG
GGTTGGCACTAGGGTACCCAACACCAAGACTTGCTGGTTATCATTGCACA
AGTTCCTTTACCCCCTTGTCCTCTTCCTCGCTTCTCTTCCCTCCCCACCC
TCGCGCGCTCTCTCTCTTTCACCAAATGTAGGATGACAGCGGGCAAAGCC
GCCTGCTCTTGCCGGGAAACGTCCTGCTTCTGCCGCTTCAGGAACACCTC
CGCCTCCTTCGCCTCGCCGCGTAACCGCAACCAGAACCCTCGTACTGTAG
TCCCGCTCCCACCCCCGGGGCCCCTGGCAAGGTCTGAGCTCGACCCTCGA
GACCTAGCTCTCGTTGCGGAGATCAATTGCATGGCGAAGGGCAGTCGGGA
CCGACGTGGTAGGGGAGCAGGTGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7911:2542..6466+

>mRNA_Ecto-sp13_S_contig7911.19191.1 ID=mRNA_Ecto-sp13_S_contig7911.19191.1|Name=mRNA_Ecto-sp13_S_contig7911.19191.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=981bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7911:2542..6466+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTATAGCGGAGTCTCACGAAAGCGTCGGCGGAAAGTTTGCAGCGGC
TACAGACCGGGCCAGAGTTGACGCTGGCTGCGGCGGCACCAAGAACACTC
CGCCGCCCGGGCGTCCGGCGGTGGAAAAGAACACGCCGACAACGAGGGAG
AGAGGCGGTATTCCGTTACCCATGGCAGGGATACCCAGAGTAGCAGCAGA
AGGTACAGCAGCAGCTGGAGAACGTCCAGCAGCGGGAGAAGAAAAACCGG
CGCATCCCAATAAGAGTGCGGAAAGGGCTGAGTTCGGGACTTCTGCGGTC
ACATTTAGGAGCACATTCGCGCGAGGTTATGACCATCGACGTCGTGGCAG
GGCATACTCATCGACGCTGCCTCCTCCACCACCTCAAGCTCCTCCCGGTG
TCGGCGGAGGTTCTAGCTGGGGAGGGCTTCGGGACCTGGACGGGTGTGTG
GTGTGGTACACGGAAAGCGTTGACTCTGCCGCGGAGGCCGATATCGAGAG
CCTCGCGTCGCGAGCAGAGAGCGTCGACAGCAGAGAGGATGACCTTGACG
CGACAGCTAGCACGGACAGCGAGGTTGCGAGCACCGCGAGCTCGACAGGG
GGCGCTAGTTCAGTTTGCAGCGGGGACTCCTCCCGGAACAGAGTGAGGGA
CCGAGACCTGTCCCTTGAGTTGTGCTCCACATGGAGCGAGGAAGGAGAGG
AAGACGTTCTGCTGGGATTGTCCCTCGCGCGAGCTAGGATGACAGCGGGC
AAAGCCGCCTGCTCTTGCCGGGAAACGTCCTGCTTCTGCCGCTTCAGGAA
CACCTCCGCCTCCTTCGCCTCGCCGCGTAACCGCAACCAGAACCCTCGTA
CTGTAGTCCCGCTCCCACCCCCGGGGCCCCTGGCAAGGTCTGAGCTCGAC
CCTCGAGACCTAGCTCTCGTTGCGGAGATCAATTGCATGGCGAAGGGCAG
TCGGGACCGACGTGGTAGGGGAGCAGGTGAC
back to top