mRNA_Ecto-sp13_S_contig79079.19186.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig79079.19186.1
Unique NamemRNA_Ecto-sp13_S_contig79079.19186.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig79079.19186.1 vs. uniprot
Match: D7FWX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX5_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.900e-15
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 QMTCVPDEYSSMLGAQGFTHGVGPGNLGLSVNLSI 105
            QMTCVPDEYSSMLGAQGFTHGVGPGNLGLSVNLSI
Sbjct:  253 QMTCVPDEYSSMLGAQGFTHGVGPGNLGLSVNLSI 287
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BLAST of mRNA_Ecto-sp13_S_contig79079.19186.1 vs. uniprot
Match: A0A835YIM6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.740e-12
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 QMTCVPDEYSSMLGAQGFTHGVGPGNLGLSVNLSI 105
            QM+CVPDEY+ +LGA GFTHGVGPGNLGLSVNL+I
Sbjct:  255 QMSCVPDEYAPLLGASGFTHGVGPGNLGLSVNLNI 289
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BLAST of mRNA_Ecto-sp13_S_contig79079.19186.1 vs. uniprot
Match: A0A7S0ACT7_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ACT7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 6.270e-12
Identity = 27/35 (77.14%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 QMTCVPDEYSSMLGAQGFTHGVGPGNLGLSVNLSI 105
            Q++CVPDEY+ MLGA GFT+GVGPGNLGLS+NLS+
Sbjct:   85 QLSCVPDEYAPMLGANGFTNGVGPGNLGLSLNLSL 119
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BLAST of mRNA_Ecto-sp13_S_contig79079.19186.1 vs. uniprot
Match: A0A7S2KKJ0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KKJ0_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.780e-11
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 QMTCVPDEYSSMLGAQGFTHGVGPGNLGLSVNLSI 105
            Q++CVPDEY+ MLG  GFT+GVGPGNLGLS+NLSI
Sbjct:  121 QLSCVPDEYAPMLGPNGFTNGVGPGNLGLSLNLSI 155
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BLAST of mRNA_Ecto-sp13_S_contig79079.19186.1 vs. uniprot
Match: A0A7S2EBI8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EBI8_TRICV)

HSP 1 Score: 62.0 bits (149), Expect = 5.850e-11
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 QMTCVPDEYSSMLGAQGFTHGVGPGNLGLSVNLSI 105
            Q++CVPDEY+ MLG  GFT+GVGPGNLGLS+NLS+
Sbjct:  126 QLSCVPDEYAPMLGPNGFTNGVGPGNLGLSLNLSV 160
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BLAST of mRNA_Ecto-sp13_S_contig79079.19186.1 vs. uniprot
Match: A0A7S1H297_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H297_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 8.310e-11
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 QMTCVPDEYSSMLGAQGFTHGVGPGNLGLSVNLSI 105
            Q++CVPDEY+ MLG  GFT+GVGPGNLGLS+NLSI
Sbjct:  169 QLSCVPDEYAPMLGPSGFTNGVGPGNLGLSLNLSI 203
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BLAST of mRNA_Ecto-sp13_S_contig79079.19186.1 vs. uniprot
Match: B8CCD1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCD1_THAPS)

HSP 1 Score: 62.4 bits (150), Expect = 1.580e-10
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 QMTCVPDEYSSMLGAQGFTHGVGPGNLGLSVNLSI 105
            Q++CVPDEY+ MLG  GFT+GVGPGNLGLS+NLSI
Sbjct:  230 QLSCVPDEYAPMLGPNGFTNGVGPGNLGLSLNLSI 264
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BLAST of mRNA_Ecto-sp13_S_contig79079.19186.1 vs. uniprot
Match: A0A7S4J3B5_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J3B5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.710e-10
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 QMTCVPDEYSSMLGAQGFTHGVGPGNLGLSVNLSI 105
            Q++CVPDEY+ MLG  GFT+GVGPGNLGLS+NLS+
Sbjct:  267 QLSCVPDEYAPMLGPNGFTNGVGPGNLGLSLNLSV 301
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BLAST of mRNA_Ecto-sp13_S_contig79079.19186.1 vs. uniprot
Match: A0A7R9W768_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W768_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.640e-10
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 QMTCVPDEYSSMLGAQGFTHGVGPGNLGLSVNLSI 105
            Q++CVPDEY+ MLG  GFT+GVGPGNLGLS+NLS+
Sbjct:  261 QLSCVPDEYAPMLGPNGFTNGVGPGNLGLSLNLSL 295
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BLAST of mRNA_Ecto-sp13_S_contig79079.19186.1 vs. uniprot
Match: A0A6V2EIW0_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2EIW0_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.200e-10
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 QMTCVPDEYSSMLGAQGFTHGVGPGNLGLSVNLSI 105
            Q++CVPDEY+ +LG  GFT+GVGPGNLGLS+NLSI
Sbjct:  269 QLSCVPDEYAPLLGPNGFTNGVGPGNLGLSLNLSI 303
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig79079.19186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWX5_ECTSI1.900e-15100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YIM6_9STRA3.740e-1282.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0ACT7_9STRA6.270e-1277.14Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2KKJ0_9STRA3.780e-1177.14Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2EBI8_TRICV5.850e-1174.29Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1H297_9STRA8.310e-1177.14Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
B8CCD1_THAPS1.580e-1077.14Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S4J3B5_9STRA2.710e-1074.29Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7R9W768_9STRA3.640e-1074.29Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6V2EIW0_9STRA5.200e-1074.29Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig79079contigEcto-sp13_S_contig79079:419..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score72.8
Seed ortholog evalue3.6e-11
Seed eggNOG ortholog2880.D7FWX5
Model size108
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs28Q14@1,2QWPT@2759
Cds size105
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464061.8401315-UTR-Ecto-sp13_S_contig79079:418..4211681464061.8401315-UTR-Ecto-sp13_S_contig79079:418..421Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig79079 419..421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464061.8534172-CDS-Ecto-sp13_S_contig79079:421..5261681464061.8534172-CDS-Ecto-sp13_S_contig79079:421..526Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig79079 422..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig79079.19186.1prot_Ecto-sp13_S_contig79079.19186.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig79079 422..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig79079.19186.1

>prot_Ecto-sp13_S_contig79079.19186.1 ID=prot_Ecto-sp13_S_contig79079.19186.1|Name=mRNA_Ecto-sp13_S_contig79079.19186.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
MTCVPDEYSSMLGAQGFTHGVGPGNLGLSVNLSI*
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mRNA from alignment at Ecto-sp13_S_contig79079:419..526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig79079.19186.1 ID=mRNA_Ecto-sp13_S_contig79079.19186.1|Name=mRNA_Ecto-sp13_S_contig79079.19186.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79079:419..526+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATGACCTGTGTACCGGACGAGTACAGCTCCATGTTGGGAGCGCAAGG
GTTCACGCATGGGGTCGGCCCGGGCAACCTCGGGCTCTCTGTTAACCTCA
GCATTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig79079:419..526+

>mRNA_Ecto-sp13_S_contig79079.19186.1 ID=mRNA_Ecto-sp13_S_contig79079.19186.1|Name=mRNA_Ecto-sp13_S_contig79079.19186.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79079:419..526+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCTGTGTACCGGACGAGTACAGCTCCATGTTGGGAGCGCAAGGGTT
CACGCATGGGGTCGGCCCGGGCAACCTCGGGCTCTCTGTTAACCTCAGCA
TTTAG
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