mRNA_Ecto-sp13_S_contig7903.19181.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7903.19181.1 vs. uniprot
Match: D8LTP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP3_ECTSI) HSP 1 Score: 419 bits (1077), Expect = 2.950e-143 Identity = 232/291 (79.73%), Postives = 240/291 (82.47%), Query Frame = 1
Query: 160 IQKSRIFLDNVEDVLGSLGSWLQMVGRPALHLARLGFGLSLLFYGMAFRTFAFHVIVFRISGFKQVQVSLGKLAARYRDARQSIRAAAAAAESAKRDQEHKAAQAKKLKAARQRMIDEKHRLLAHGRKLTKEDTRKFMKKYHKELTTIKKEQAGINSINSSMISVKASWIRCSVDPGNARSSLRGLYSGLITSFTASTYQTAGQIALGLHVGTLLKTHLLDLFGPMLDPIGYRLDLTTYYDEEEIPYMGNANAMDGPHNLAMNVFCYALVFVVIRAHPPLALKVITRQFTA 1032
+QK+RIFLDNVED+LGSLG LQMVG+PALHL RLGFGLSLLFYGMAFRTFAFHVIVFRISGFKQVQVS GKLAA+YR ARQSIR AAAA HRLLAHGRKLTKEDTRKFMKKYHKELTTIK+EQA INSINSSMISVK+S VDP NARSSLRGLYSGLITSFTASTYQTAGQIALGLHVGTLLKTHLLDLFGPMLDPIGYRLDLTTYYDE EIPYMGN NAMDGPHNLAMN+FCYALVF VIRAHPPLALK F A
Sbjct: 1 MQKNRIFLDNVEDILGSLGRRLQMVGKPALHLTRLGFGLSLLFYGMAFRTFAFHVIVFRISGFKQVQVSSGKLAAKYRKARQSIREAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRLLAHGRKLTKEDTRKFMKKYHKELTTIKQEQAAINSINSSMISVKSS-----VDPDNARSSLRGLYSGLITSFTASTYQTAGQIALGLHVGTLLKTHLLDLFGPMLDPIGYRLDLTTYYDEAEIPYMGNPNAMDGPHNLAMNIFCYALVFAVIRAHPPLALKTAMVYFGA 286
BLAST of mRNA_Ecto-sp13_S_contig7903.19181.1 vs. uniprot
Match: D8LTP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP1_ECTSI) HSP 1 Score: 290 bits (743), Expect = 1.940e-92 Identity = 162/273 (59.34%), Postives = 201/273 (73.63%), Query Frame = 1
Query: 190 VEDVLGSLGSWLQMVGRPALHLARLGFGLSLLFYGMAFRTFAFHVIVFRISGFKQVQVSLGKLAARYRDARQSIRAAAAAAESAKRDQEHKAAQAKKLKAARQRMIDEKHRLLAHGRKLTKEDTRKFMKKYHKELTTIKKEQAGINSINSSMISVKASWIRCSVDPGNARSSLRGLYSGLITSFTASTYQTAGQIALGLHVGTLLKTHLLDLFGPMLDPIGYRLDLTTYYDEEEIPYMGNANAMDGPHNLAMNVFCYALVFVVIRAHPPLALK 1008
VED L ++ S++ +VG P LHL RLGFGLSLLFYGMAFRTFAFHVIVFRI+G KQVQ ++ +L +Y AR+SIR AA AAE+ + + L+AAR+RMI+EK RLL+ G L++ DT FMKKY EL IK+EQ S SS++S +R SV P ARSS G+Y+ LI FTAST QTAGQ LGLH+G LLKTH+LDLFGP++DPIGYRLDL+ Y+DEE+IPYMG ANAM GP N+A+N+ CY++VF V R HP +ALK
Sbjct: 9 VEDALVTMWSYMAVVGVPVLHLGRLGFGLSLLFYGMAFRTFAFHVIVFRIAGMKQVQRAVRELVGKYASARRSIREAAEAAETVG----ERVVKGDDLQAARERMIEEKKRLLSDGF-LSERDTTYFMKKYRAELLKIKEEQELFQSARSSVLS-----LRSSVGPRQARSSFNGVYNALIACFTASTIQTAGQFTLGLHIGNLLKTHVLDLFGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMGGPRNMALNILCYSVVFAVFRVHPSVALK 271
BLAST of mRNA_Ecto-sp13_S_contig7903.19181.1 vs. uniprot
Match: A0A6H5JP85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP85_9PHAE) HSP 1 Score: 296 bits (757), Expect = 4.860e-92 Identity = 186/338 (55.03%), Postives = 230/338 (68.05%), Query Frame = 1
Query: 10 GTAFAAAACFRGGGGATEGEXXXXXXXXXXXXXXXXXXXXXXXVASLSGGIQKSRIFLDNVEDVLGSLGSWLQMVGRPALHLARLGFGLSLLFYGMAFRTFAFHVIVFRISGFKQVQVSLGKLAARYRDARQSIRAAAAAAESAKRDQEHKAAQAKKLKAARQRMIDEKHRLLAHGRKLTKEDTRKFMKKYHKELTTIKKEQAGINSINSSMISVKASWIRCSVDPGNARSSLRGLYSGLITSFTASTYQTAGQIALGLHVGTLLK-----THLLDLFGPMLDPIGYRLDLTTYYDEEEIPYMGNANAMDGPHNLAMNVFCYALVFVVIRAHPPLALK 1008
G AFAAA CFRGG XXXXXXXX V + G +K+R+ +D VED L ++ S + VG P HL R GFGLSLLFYGMAFRTFAFHVIVFRI+G KQVQ ++ +L Y +AR+SIR AA AAE+ + + L+AAR+RMI+EK RLL+ G L+K +T FMKKY EL IK+EQ S SS++S +R SV P ARSS G+Y+ LI SFTAST QTAGQ LGLH+G LLK TH+LDLFGP++DPIGYRLDL+ Y+DEE+IPYMG ANAMDGP N+A+N+FCY++VF+V + HP +ALK
Sbjct: 152 GNAFAAATCFRGGAXXXXXXXXXXXXXXDSGGIRPAIAAAVQSVDA-GGTPRKNRLMIDYVEDALVTMWSHMVNVGVPVFHLGRFGFGLSLLFYGMAFRTFAFHVIVFRIAGMKQVQRAVRELVGNYANARRSIREAAKAAETVG----ERVVKGDDLQAARERMIEEKKRLLSDGF-LSKRETIYFMKKYRAELLRIKEEQELFQSARSSVLS-----LRSSVGPRQARSSFNGVYNALIASFTASTIQTAGQFTLGLHIGNLLKASYLLTHVLDLFGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMDGPRNMALNIFCYSVVFIVFQVHPSVALK 478
BLAST of mRNA_Ecto-sp13_S_contig7903.19181.1 vs. uniprot
Match: A0A6H5JS93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS93_9PHAE) HSP 1 Score: 259 bits (661), Expect = 3.350e-82 Identity = 136/177 (76.84%), Postives = 142/177 (80.23%), Query Frame = 1
Query: 502 MIDEKHRLLAHGRKLTKEDTRKFMKKYHKELTTIKKEQAGINSINSSMISVKASWIRCSVDPGNARSSLRGLYSGLITSFTASTYQTAGQIALGLHVGTLLKTHLLDLFGPMLDPIGYRLDLTTYYDEEEIPYMGNANAMDGPHNLAMNVFCYALVFVVIRAHPPLALKVITRQFTA 1032
MIDEKHRLLAHGRKLTKEDTRKFMKKY + R SVDP NARSSLRGLY+GLITSFTASTYQTAGQIALGLHVGTLLKTHLLDLFGPM+DPIGYRLDLTTYYDEEEIPYMGNANAMDGPHNLAMN+FCYALVFVVIRAHPPL+LK+ F A
Sbjct: 1 MIDEKHRLLAHGRKLTKEDTRKFMKKYQSK--------------------------RSSVDPDNARSSLRGLYNGLITSFTASTYQTAGQIALGLHVGTLLKTHLLDLFGPMVDPIGYRLDLTTYYDEEEIPYMGNANAMDGPHNLAMNIFCYALVFVVIRAHPPLSLKMAMIYFGA 151
BLAST of mRNA_Ecto-sp13_S_contig7903.19181.1 vs. uniprot
Match: A0A6H5JP14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP14_9PHAE) HSP 1 Score: 167 bits (423), Expect = 2.420e-46 Identity = 95/111 (85.59%), Postives = 100/111 (90.09%), Query Frame = 1
Query: 163 QKSRIFLDNVEDVLGSLGSWLQMVGRPALHLARLGFGLSLLFYGMAFRTFAFHVIVFRISGFKQVQVSLGKLAARYRDARQSIRAAAAAAESAKRDQEHKAAQAKKLKAAR 495
Q+ R+ VEDVLGSLG WLQMVGRP LHLARLGFGLSLLFYGMAFRTFAFHVIVFRISGFKQV SLGKLAA+YR+ARQSIRAAAAAAESAKRDQEHKAAQA+KLK R
Sbjct: 152 QRERVTCCKVEDVLGSLGRWLQMVGRPPLHLARLGFGLSLLFYGMAFRTFAFHVIVFRISGFKQV--SLGKLAAKYRNARQSIRAAAAAAESAKRDQEHKAAQAEKLKVCR 260
BLAST of mRNA_Ecto-sp13_S_contig7903.19181.1 vs. uniprot
Match: D7FJ41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ41_ECTSI) HSP 1 Score: 125 bits (313), Expect = 9.510e-29 Identity = 100/288 (34.72%), Postives = 149/288 (51.74%), Query Frame = 1
Query: 160 IQKSRIFLDNVEDVLGSLGSWLQMVGRPALHLARLGFGLSLLFYGMAFRTFAFHVIVFRISGFKQVQVSLGKLAARYRDARQSIRAAAAAAESAKRDQEHKAAQAKKLKAARQRMIDEKHRLLAHG-RKLTKEDTRKFMKKYHKELTTIKKEQAGINSINSSMISVKASWIRCSVDPGNARSSLRGLYSGLITSFTASTYQTAGQIALGLHVGTLLKTHLLDLFGPMLDPIGYRLDLTTYYDEEEIPYMGNANAMDGPHNLAMNVFCY---ALVFVVIRAHPPLALKV 1011
+ R++LD VE S+ + + P H R FGLSLLFYG F T AFH++VFRISG+K+ S +L A Y+ ARQ++ AA K + A A+K + H +++ E+ R F+ KY ++ I +EQ + +SS++++K + + +S+ LY+ +ITS TAST++ AGQ+ L L G L+K L DL GP++DPIGY+++L TY AN M GP NL + + Y A VF P AL +
Sbjct: 81 LSDKRLWLDVVEPFFASVSLAISSL-YPLWHTLRGMFGLSLLFYGEDFATLAFHIVVFRISGWKKAAKSKDELVAYYKKARQTMTKAA------KDVRASAAIIARKDRXXXXXXXXXXXXXXXHAIGRVSAEEARAFIDKYRNDIEIIAREQEVLAETSSSILAIKGA-----LSFKKLAASVNSLYAAVITSITASTFKRAGQLTLALTCGGLIKRALFDLLGPVIDPIGYQIELETYV----------ANIMRGPANLYITLAGYVSSASVFFHFFVDPQQALTI 346
BLAST of mRNA_Ecto-sp13_S_contig7903.19181.1 vs. uniprot
Match: A0A835Z8D7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8D7_9STRA) HSP 1 Score: 115 bits (288), Expect = 1.840e-25 Identity = 88/282 (31.21%), Postives = 150/282 (53.19%), Query Frame = 1
Query: 166 KSRIFLDNVEDVLGSLGSWLQMVGRPALHLARLGFGLSLLFYGMAFRTFAFHVIVFRISGFKQVQVSLGKLAARYRDARQSIRAAAAAAESAKRDQEHKAAQAKKLKAARQRMIDEKHRLLAHGRKLTKEDTRKFMKKYHKELTTIKKEQAGINSINSSMISVKASWIRCSVDPGNARSSLRGLYSGLITSFTASTYQTAGQIALGLHVGTLLKTHLLDLFGPMLDPIGYRLDLTTYYDEEEIPYMGNANAMDGPHNLAMNVFCYALVFVVIRAHPPLALKV 1011
++ + L+ VE +L + +V P + +L FGLS+LFYG+ F+T A H+I+FRISG+K V +G+L + Y +RAA AA + AQ K + AR++M+ ++ ++L GR +T E+ + F+ K+ +EL + +Q + + SS+++++++ IR +LR LY I S TAST++ AG+ + ++ G L+ + L GP +DP+ Y++ E MG + A LA A++ V+ P ALKV
Sbjct: 23 RNELILERVE----ALAPKVALVTTPLWRVTKLLFGLSILFYGLNFKTLALHIIIFRISGYKDVMQHMGELQSHYT----KVRAATEAAAKNTKSLNESLAQKAKRREAREKMLVDRQQMLKDGR-ITAEEAQAFIAKHREELEIMAAQQEQLQATGSSLVALRSA-IRWKA----VGKTLRKLYEATIASITASTFEAAGRFTMAMYCGDALRDDMRTLLGPSIDPLAYQV--AEVKGNVESIMMGPSAARAAFFGLAAT----AVLLVMFYEEPNWALKV 284
BLAST of mRNA_Ecto-sp13_S_contig7903.19181.1 vs. uniprot
Match: A0A835YUQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUQ5_9STRA) HSP 1 Score: 113 bits (282), Expect = 1.410e-24 Identity = 82/227 (36.12%), Postives = 131/227 (57.71%), Query Frame = 1
Query: 241 PALHLARLGFGLSLLFYGMAFRTFAFHVIVFRISGFKQVQVSLGKLAARYRDARQSIRAAAAAAESAKRDQEHKAAQAKKLKAARQRMIDEKHRLLAHGRKLTKEDTRKFMKKYHKELTTIKKEQAGINSINSSMISVKASWIRCSVDPGNARSS-LRGLYSGLITSFTASTYQTAGQIALGLHVGTLLKTHLLDLFGPMLDPIGYRLDLTTYYDEEEIPYMGNANA 918
P L +L FG+S+LFYG F+T AFH+I+FRISG+K V L + Y+ AR++ AA S AQ K + R+ M+ ++ +L GR +T E+ R+F+ ++ +E+ I +Q + + +SS+++++ + P A S+ LR LY+ L+TS TAST++ AG+ + L+ G +LK ++ L GP +DP+ Y +L T D E I MG A A
Sbjct: 65 PVWRLVKLLFGISILFYGSNFQTIAFHIIIFRISGYKSVIKHCRDLVSHYKKARKATALAARHTLSLNES----LAQQKLRREEREHMLRDRQEMLRDGR-ITAEEARQFITRHRQEIRAIAAQQDQLAAASSSIMALRTAI------PWKALSTTLRDLYAALVTSVTASTFKAAGRFTMALYCGDVLKRDVIALLGPCIDPLSYEAELCT--DLESI-MMGPAAA 277
BLAST of mRNA_Ecto-sp13_S_contig7903.19181.1 vs. uniprot
Match: A0A835Z464_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z464_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 6.470e-6 Identity = 47/138 (34.06%), Postives = 82/138 (59.42%), Query Frame = 1
Query: 169 SRIFLDNVEDVLGSLGSWLQMVGRPALHLARLGFGLSLLFYGMAFRTFAFHVIVFRISGFKQVQVSLGKLAARYRDARQSIRAAAAAAESAKRDQEHKAAQAKKLKAARQRMIDEKHRLLAHGRKLTKEDTRKFMKKY 582
+++FL++VE G++ + + +V L L FGLS+LF+GM F++ A H+I+F+I GFK+V + L A YR R + AA +A +++E A+ ++ +A M+ ++ +LA GR L ++ R FM K+
Sbjct: 63 TKLFLEHVE---GAVNAVVPVVAPVFFSLKAL-FGLSILFFGMTFKSLALHIILFQIVGFKKVVMHWHHLVAHYRRVRAATLHAARSARRTLKEREDTGARVREQEA----MLRDRKAMLADGR-LDVDEARAFMAKH 191 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7903.19181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7903.19181.1 >prot_Ecto-sp13_S_contig7903.19181.1 ID=prot_Ecto-sp13_S_contig7903.19181.1|Name=mRNA_Ecto-sp13_S_contig7903.19181.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=344bp RPLGTAFAAAACFRGGGGATEGEGGATIGAAAGAASEAADAGAAAAVASLback to top mRNA from alignment at Ecto-sp13_S_contig7903:419..6560- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7903.19181.1 ID=mRNA_Ecto-sp13_S_contig7903.19181.1|Name=mRNA_Ecto-sp13_S_contig7903.19181.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6142bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7903:419..6560- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7903:419..6560- >mRNA_Ecto-sp13_S_contig7903.19181.1 ID=mRNA_Ecto-sp13_S_contig7903.19181.1|Name=mRNA_Ecto-sp13_S_contig7903.19181.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1032bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7903:419..6560- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |