mRNA_Ecto-sp13_S_contig12291.1918.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12291.1918.1
Unique NamemRNA_Ecto-sp13_S_contig12291.1918.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12291.1918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12291contigEcto-sp13_S_contig12291:1031..2431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size577
Hectar predicted targeting categoryother localisation
Exons3
Cds size534
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462653.7008493-UTR-Ecto-sp13_S_contig12291:1030..10391681462653.7008493-UTR-Ecto-sp13_S_contig12291:1030..1039Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12291 1031..1039 +
1681462653.7370353-UTR-Ecto-sp13_S_contig12291:2397..24311681462653.7370353-UTR-Ecto-sp13_S_contig12291:2397..2431Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12291 2398..2431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462653.7128954-CDS-Ecto-sp13_S_contig12291:1039..13691681462653.7128954-CDS-Ecto-sp13_S_contig12291:1039..1369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12291 1040..1369 +
1681462653.7207253-CDS-Ecto-sp13_S_contig12291:1853..19761681462653.7207253-CDS-Ecto-sp13_S_contig12291:1853..1976Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12291 1854..1976 +
1681462653.7286131-CDS-Ecto-sp13_S_contig12291:2316..23971681462653.7286131-CDS-Ecto-sp13_S_contig12291:2316..2397Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12291 2317..2397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12291.1918.1prot_Ecto-sp13_S_contig12291.1918.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12291 1040..2397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12291.1918.1

>prot_Ecto-sp13_S_contig12291.1918.1 ID=prot_Ecto-sp13_S_contig12291.1918.1|Name=mRNA_Ecto-sp13_S_contig12291.1918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp
MLLLWSLGESRDQGHAGGKRGVMTAGATLAFLLPLIHPQPPPHLPLERKR
MDCQPCQPLHQQRVWSSRRSPAALLPSAKLSVCTEEDCVQQGAYQTLARL
EKVAKGKDIQVDTCPCLGMCGLGPCVSIDWDGSRMESRGGIFHADEEAAL
KLVSDALEPPPEQEPSVSQERDPYEEQ*
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mRNA from alignment at Ecto-sp13_S_contig12291:1031..2431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12291.1918.1 ID=mRNA_Ecto-sp13_S_contig12291.1918.1|Name=mRNA_Ecto-sp13_S_contig12291.1918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1401bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12291:1031..2431+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTTGCCCATGCTGCTTTTATGGAGTTTGGGAGAGAGCAGAGATCAGGG
ACACGCGGGCGGAAAGCGAGGCGTCATGACCGCAGGCGCGACCTTAGCGT
TCTTGCTGCCACTAATACATCCACAGCCACCGCCACACCTTCCTCTGGAG
AGGAAACGAATGGACTGCCAGCCTTGCCAACCTCTCCACCAGCAGCGTGT
TTGGAGCAGCAGGCGTTCGCCTGCTGCGTTGCTGCCGTCGGCGAAGCTAA
GCGTTTGTACGGAAGAGGACTGCGTCCAACAAGGAGCGTATCAAACGCTG
GCGAGACTTGAGAAGGTGGCGAAGGGGAAAGACATTCAGGTGCGGTAAAC
CTGCAGCTGCTCGTGTGCAACATTATGCTAAAAATGGAAGATTGACAGCT
CGTCACCCCCACCGCATGCAGCTCACTTCTGGCATCGACGGTGCGTGGAT
ATGACACCATTAAAGGACCCGGACTTGTATCACCCACACCAAATACAGGC
AGGTCATCATCTGGATCTTACCATTCTTCTTGGTGTAAAACATGAATGCC
ATAGGGCCCGCGACCGATCATTCGCCGAGCAAGCTCATTGTCTGGGCAAT
CATAGCACGCAGCTGGCGTGAGACCCGACCCATCAACCACACCAATCGTA
CACGATTCACACAGATCACTTCTGTACGGAGCTTCCCTCGTTACAATGAG
CTACCCAACGTAATCATATGTTACGACAGCAGTTGTTGCCGCTAATTGGT
TCGAACCCTCTCCGTGACTCTTCTCCCACGCACGGCATGTGCACAACGTC
CAACTTATTTTTCGGCCGTGCAGGTGGACACGTGCCCCTGTTTGGGCATG
TGCGGCTTAGGGCCGTGTGTTTCGATCGACTGGGATGGGTCGCGGATGGA
ATCAAGAGGGGGAATATTTCACGCGGATGAGGAGGCGGCGCTAAAGGTGG
GGCCGGAATGCATGTCTTGCCCGCTGGTGACGTGTACACTGCAATACACT
AGGCTCTACTGTACATCGTTATTACAAAGGGAAGAGCTTTTTCAGATCAC
AAAGACCAACAATTACTTTGGGAAAGGCTCAAACCCTGTCGTGACTCCGA
ACAGCTTCAAAACGGGCGCTTCCCCGCGAACATACGTAAGAGGAGGATTC
AGGTGAACGGACCCTGCTCGCACCTACCGGTGGTTCGTAAACTGTAGGTC
GCCTTAAGTTTGCAGAAAAATCGCTTTGTTGATTGGGGAACCCGTCGTCT
TCTTGCTCCTGTGCGCCCTCCTCGAAATCCTACTAGCTTGTATCCGACGC
ACTGGAGCCGCCGCCAGAACAGGAGCCCTCGGTGTCACAAGAGAGAGATC
CTTACGAGGAGCAATGACGGGGCTGAGCGAGAACCTAAGAAATAGCTGGA
T
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12291:1031..2431+

>mRNA_Ecto-sp13_S_contig12291.1918.1 ID=mRNA_Ecto-sp13_S_contig12291.1918.1|Name=mRNA_Ecto-sp13_S_contig12291.1918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12291:1031..2431+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCTTTTATGGAGTTTGGGAGAGAGCAGAGATCAGGGACACGCGGG
CGGAAAGCGAGGCGTCATGACCGCAGGCGCGACCTTAGCGTTCTTGCTGC
CACTAATACATCCACAGCCACCGCCACACCTTCCTCTGGAGAGGAAACGA
ATGGACTGCCAGCCTTGCCAACCTCTCCACCAGCAGCGTGTTTGGAGCAG
CAGGCGTTCGCCTGCTGCGTTGCTGCCGTCGGCGAAGCTAAGCGTTTGTA
CGGAAGAGGACTGCGTCCAACAAGGAGCGTATCAAACGCTGGCGAGACTT
GAGAAGGTGGCGAAGGGGAAAGACATTCAGGTGGACACGTGCCCCTGTTT
GGGCATGTGCGGCTTAGGGCCGTGTGTTTCGATCGACTGGGATGGGTCGC
GGATGGAATCAAGAGGGGGAATATTTCACGCGGATGAGGAGGCGGCGCTA
AAGCTTGTATCCGACGCACTGGAGCCGCCGCCAGAACAGGAGCCCTCGGT
GTCACAAGAGAGAGATCCTTACGAGGAGCAATGA
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