mRNA_Ecto-sp13_S_contig7900.19179.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7900.19179.1
Unique NamemRNA_Ecto-sp13_S_contig7900.19179.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7900.19179.1 vs. uniprot
Match: D7FJ99_ECTSI (SnoaL-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ99_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 8.060e-108
Identity = 192/212 (90.57%), Postives = 196/212 (92.45%), Query Frame = 3 
Query:  243 ATRRRRGKQMESTMKKKRSDASRQRYENIYNVSEGLKEVVAEGGGXXXXXS---ETAKEWHEWQDATTSDSDDGDKGWSSFGGGESKAGGDGDGEAALRGSRDLTRKTVDAVRVLAEMGRIGEGEKSLLLADVIRNAPSGVASKVEIAYSVLLDGEVTPEGMEYTDKAEEFAHQCKAIAGQLLEQSNSNRPGRWRFWAKPQWXXXXASKDSE 869
            A R+R  + MESTMKKKRSDASRQRYENIYNVSEGLKEVVAEGGGXXXXX    ETAKEWHEWQDA TSDS  GDKGWSSFGG E K GGDG+GEAALRGSRDLTRKTVDAVRVLAEMGRIGEGEKSLLLADVIRN PSG ASKVEIAYSVLLDGEVTPEGMEYTDKAEEFAH+CKAIAGQLLEQSNSNRPGRWRFWAKPQWXXXXASKDSE
Sbjct:  265 AMRKRIEEAMESTMKKKRSDASRQRYENIYNVSEGLKEVVAEGGGXXXXXXXXXETAKEWHEWQDAATSDSXXGDKGWSSFGGDEGKTGGDGEGEAALRGSRDLTRKTVDAVRVLAEMGRIGEGEKSLLLADVIRNVPSGGASKVEIAYSVLLDGEVTPEGMEYTDKAEEFAHECKAIAGQLLEQSNSNRPGRWRFWAKPQWXXXXASKDSE 476
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BLAST of mRNA_Ecto-sp13_S_contig7900.19179.1 vs. uniprot
Match: A0A6H5KNS2_9PHAE (SnoaL-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNS2_9PHAE)

HSP 1 Score: 347 bits (891), Expect = 1.410e-106
Identity = 195/211 (92.42%), Postives = 198/211 (93.84%), Query Frame = 3 
Query:  243 ATRRRRGKQMESTMKKKRSDASRQRYENIYNVSEGLKEVVAEGGGXXXXX--SETAKEWHEWQDATTSDSDDGDKGWSSFGGGESKAGGDGDGEAALRGSRDLTRKTVDAVRVLAEMGRIGEGEKSLLLADVIRNAPSGVASKVEIAYSVLLDGEVTPEGMEYTDKAEEFAHQCKAIAGQLLEQSNSNRPGRWRFWAKPQWXXXXASKDSE 869
            A R+R  + MESTMKKKRSDASRQRYENIYNVSEGLKEVVAEGG XXXXX  SETAKEWHEWQDA TSDSDDG KGWSSFGGGE KAGGDGDGEAAL+GSRDLTRKTVDAVRVLAEMGRIGE EKSLLLADVIRNA S VASKVEIAYSVLLDGEVTPEGMEYTDKAEEFAHQCKAIAGQLLEQSNSNRPGRWRFWAKPQWXXXXASKDSE
Sbjct:  475 AMRKRIEEAMESTMKKKRSDASRQRYENIYNVSEGLKEVVAEGGXXXXXXXXSETAKEWHEWQDAATSDSDDGGKGWSSFGGGEGKAGGDGDGEAALKGSRDLTRKTVDAVRVLAEMGRIGEEEKSLLLADVIRNASSDVASKVEIAYSVLLDGEVTPEGMEYTDKAEEFAHQCKAIAGQLLEQSNSNRPGRWRFWAKPQWXXXXASKDSE 685
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BLAST of mRNA_Ecto-sp13_S_contig7900.19179.1 vs. uniprot
Match: A0A835YQ09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ09_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 7.770e-10
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 3 
Query:  537 RDLTRKTVDAVRVLAEMGRIGEGEKSLLLADVIRNAPSGVASKVEIAYSVLLD----GEVTPEGMEYTDKAEEFAHQCKAIAGQLL 782
            RDLTR+TV A+R +   GRI + EK +LL DVI++A     S +E+AY +LL     G    EG    +  EEFA QC+  A  ++
Sbjct:   19 RDLTRRTVAAIREMCTAGRISDKEKRVLLTDVIKHATGESPSMIEVAYELLLSQMDSGSGASEGFGDDEACEEFAEQCRIFAADII 104
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7900.19179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJ99_ECTSI8.060e-10890.57SnoaL-like domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5KNS2_9PHAE1.410e-10692.42SnoaL-like domain-containing protein n=1 Tax=Ectoc... [more]
A0A835YQ09_9STRA7.770e-1041.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7900contigEcto-sp13_S_contig7900:3001..6598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2037
Hectar predicted targeting categorymitochondrion
Exons3
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_008320.1
Cds size663
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464060.9088635-UTR-Ecto-sp13_S_contig7900:3000..41651681464060.9088635-UTR-Ecto-sp13_S_contig7900:3000..4165Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7900 3001..4165 -
1681464060.9527853-UTR-Ecto-sp13_S_contig7900:6389..65981681464060.9527853-UTR-Ecto-sp13_S_contig7900:6389..6598Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7900 6390..6598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464060.920568-CDS-Ecto-sp13_S_contig7900:4165..42411681464060.920568-CDS-Ecto-sp13_S_contig7900:4165..4241Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7900 4166..4241 -
1681464060.9315412-CDS-Ecto-sp13_S_contig7900:5229..53881681464060.9315412-CDS-Ecto-sp13_S_contig7900:5229..5388Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7900 5230..5388 -
1681464060.9417613-CDS-Ecto-sp13_S_contig7900:5961..63891681464060.9417613-CDS-Ecto-sp13_S_contig7900:5961..6389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7900 5962..6389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7900.19179.1prot_Ecto-sp13_S_contig7900.19179.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7900 4166..6389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7900.19179.1

>prot_Ecto-sp13_S_contig7900.19179.1 ID=prot_Ecto-sp13_S_contig7900.19179.1|Name=mRNA_Ecto-sp13_S_contig7900.19179.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=221bp
MTVCVRFFVWYATRRRRGKQMESTMKKKRSDASRQRYENIYNVSEGLKEV
VAEGGGGGGGGSETAKEWHEWQDATTSDSDDGDKGWSSFGGGESKAGGDG
DGEAALRGSRDLTRKTVDAVRVLAEMGRIGEGEKSLLLADVIRNAPSGVA
SKVEIAYSVLLDGEVTPEGMEYTDKAEEFAHQCKAIAGQLLEQSNSNRPG
RWRFWAKPQWWKFWASKDSE*
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mRNA from alignment at Ecto-sp13_S_contig7900:3001..6598-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7900.19179.1 ID=mRNA_Ecto-sp13_S_contig7900.19179.1|Name=mRNA_Ecto-sp13_S_contig7900.19179.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3598bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7900:3001..6598- (Ectocarpus species13 EcNAP12_S_4_19m)
CATTGGTCGGCGGTCTCACGAGCCACCCTCGCGGCGGGGGGTTGGCGATC
GCGCACGCGAGCACGGCGCGATACGACGCTCGCCGATATACATGCCAAAT
GGCCTACACGATTGTCGTCATTGGAAGGTTTCGTTTTCCTTGCATGACCA
CCGGAGGGCCCATGAGTACCTCGAGAAGGCCAAAATGAGCGGTATTTCAG
TAAGAAACCATGACCGTCTGCGTGCGTTTTTTCGTTTGGTACGCCACGCG
CCGCCGCCGCGGCAAACAGATGGAGTCGACAATGAAGAAGAAGCGCAGCG
ACGCCAGCCGGCAGAGGTACGAGAACATATACAACGTGAGCGAGGGGCTT
AAGGAGGTCGTGGCGGAGGGAGGAGGAGGAGGAGGAGGAGGCTCCGAGAC
CGCTAAGGAGTGGCACGAGTGGCAAGACGCTACCACCAGCGATAGCGACG
ATGGTGATAAGGGCTGGTCGAGCTTCGGTGGCGGCGAGAGCAAGGCCGGG
GGTGATGGGGACGGGGAGGCCGCGTTGAGGGGTTCGAGGGACCTAACGAG
GAAGACTGTCGACGCCGTAAGGGTACTGGCGGAAATGGGGCGGATAGGCG
AGGGGGAGAAGAGCTTGCTGCTTGCGGACGTTATCCGGTAGGTCGCGGGA
CGGTCGAGCGGCGTGTTTACTTTACACATGTTGTGGTTTCTCCCAAAAAC
CAAACAATAAACAGTCTCAATGAAAACCAACTATGCTTGCATGGAGAAAT
TAGACACACATATGCTTTGATTTGGAGGACTGATCATTGGTTTATACAGG
GCCAGAGAGACGGAGCAAGAGTTGGCGAGTACGGTACTCTAGTGCTCGAG
GGGGGGGTGCACGGTCGGTGCTGCTGTAAGGCCGAAGAGGCTGCAAGCAG
CATCGAGTTTGTGAACCCTCTCCCAGTTGGCGTGAAAAAACAGTGACGAT
CGACGCGATTTTCGTGTTCGCCCCGCTATTCCCGGGAACGTTCCAGGACC
GAGACAAATCCAAGCAGCGCTTTGAGTACCTCCCCCCCCTCCCCCACCCA
TCATCCCCTTGACGTCAGCTATCAACCGTCATCTCGGTGGTGAAGTGAAT
TGCCAAATTTTGTCCATGAAGTGAACCGTCACCCATAAAAGGCCGTGCTC
AACCATGGTCCCTGCCTGTTCTGAACTGTCCATCATCGTTCTCTGTTGCC
GTCCAATCAGAAACGCTCCCTCAGGTGTTGCTAGCAAGGTGGAAATTGCG
TACTCGGTACTGCTCGACGGGGAAGTGACGCCGGAGGGGATGGAGTACAC
GGACAAGGCCGAAGAGTTCGCACACCAGTGCAAGGCCATAGCCGGGCAGC
TTCTGGAACAAAGCAACAGGTGCGCGTTCTTGGAAGGTGTTGCCACGATG
CTCCCCCGCCATGTCTCCCACCGGGAGTATTGAAAGCTTGTGTATGTTGC
TCACGACGCAATTTCAGCTGTACGCGTCACCACTTGCTTGAGAAGTTGGC
AGTTTTGAAAGCGAGCAAAATGTGATGAAAATTCTAAGGATGAACAATTG
GGAGGTGTTGAGCCAGTCAAGATTACCCCCACTACAACCTACGTTGGGCA
GTTTCGAAAGCGAGCAAAATTCAATCAAAATTCAAAGGATGAACAGCAGT
TGGGAGGTACGGAGCCAGTCAAGAATGCCCCACTACGACTTTCGTTATCA
ACATTGTGTTACACAGCTGCGTTAGTTTCAACCAATGTTCAACATTGGGT
CAACCCATGGAGTCAATATTGGGTTTACAACTACGTCAGATACCATCCCC
CTTCCCCTCGCCTCTCAAGACTAGTATGGCCATGCATGAACCTTGTAGTC
AACACAGGGTTTCACAATAAAAACGTTAGGTACCATCCCCCTTCCACTCG
CCTCTGAAGACTAGTATGGTCATGCATAAACCATGTGGTCAACACTGGGT
TTCACAACCAAATACGTTAGATACCATCACCCCCTCGCCTCTCAAAGACT
AGTATGGCCATGCATAAACCATGTAGTCAACACTGGGTTTCACAACTACG
TTTGATAGCATCCCCCTTCCCCTCGCCCCTGAAGACAAGTATGGCCATGT
ATAGAACCTTGTAGTCAACGCTGGGTTTCACAACTACGTTCGATACCATC
CCCGTTCCACTCGCCTCTGAAGACTAGTACAGCCATGCATAAACCATGTA
GTCAACACTGGGTTTTACAACTACGGTAGCTACCATCCCGCTTCCCGCTC
GCCTATCAAAGACTAGCATGGCCATGCGTAACAACGAGAGAGACCCCGAG
ACCAGTCTGCTCACTCCGACTGCTGTGCGGGTACCGCTCTTTACTTCTCC
CTCGCAGCAACCGGCCGGGGCGGTGGAGGTTCTGGGCGAAGCCGCAATGG
TGGAAATTCTGGGCGAGTAAAGATTCCGAATAGGTTCGGGTTGGAGACTT
GACAGCACGAGCGGCAACAAGTCTGCGAAGCCCCCGGGGCGGCGACGGGG
GCGGCGGCGGATTGTGCGTGTTTGTCGTGGTCGGAGCTGTTTATCGTCAC
GCGCGGCGCATGCATCCCATGCACACCTCCCTACCACGTTTGTTCTGTTC
AAACAACTGTTCACACAACTAGCGAAATAATTACAGGCGGCGGAGGGGAC
GGACGAGGGGGGCACCGGCGAATCATCACCGGTGGGGTCGCACAGGCGCC
AGTTCGTAGCAAATCCAATTCTGTGTCTTTTTTATGGAGGCGTTATTTTC
GGGAGCGTGGGGGCAGAACATGACCCGAGGTTTTCCCTCCCACTGCAGTT
AGCTAGATGTTGTCGGCGCTTGACTTCCGTGCACATAGTTTGGGAGAAGG
GTGATGGGTGGTTTTCTCTTGGACGTGGAGGTAATGGTCCGGCGTGGCTG
CTTAGTGTGCGGTTGTCGGAAGATCTTGACTTACAGAGAAAAAATAAGCA
AAACAAAGGTCATGTGCGCGATGCCCACCGGTGCCGCTAGTTGCCAAAGC
TCGTGCTGCTGCCAATGCTTCAGCCCTCGCTGGTGTTGCACGCGGGCAGA
GTCTCGTTGCGTGTTTCTCTTGAGAAGACAAAATATATGCTTGTGTCCCA
TGCATTCAGCGGCTTGTTGACCTCACACCACTAACAGCGGTGTCACTCAC
ACACTAGTGGCGGTATCAGAGACGACATGGTCACGGGTGACCAGTGTTCC
GTGGATGAACCACGGGCCTCCAGAGTAAGTTCCGAAACACACATGGATTA
TGGATGAACACGTTGAAGCTGGAGGCTGTACCGGATATGATGCACGGATG
TGGACCTCTTGGAGAACCTGGAAGAGTCACGGAAAGCGTGTTTTATGCAT
ACAAGGTAGTTTTACACGACTTGTTTTGCTTCTCTCCTCTAAGTATTTAC
AATGTTTCGTGGGAAAGCGGCGCCCGGAGTGTGCTCGTTTCGTTCGCTGT
GTCCGTGCTAGGCCACATTTCTCGCTGGACTTGAACTCGCCTCCGCTAGC
GACATATATTCGTTTGTCATTCTTGGAGGCGTCGTCGGGCCTTGCAATGG
GTTCGTTCATAACTGAGCCAGTGTGGTGAAAGTTGATTTGGTTTTCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7900:3001..6598-

>mRNA_Ecto-sp13_S_contig7900.19179.1 ID=mRNA_Ecto-sp13_S_contig7900.19179.1|Name=mRNA_Ecto-sp13_S_contig7900.19179.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7900:3001..6598- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGTCTGCGTGCGTTTTTTCGTTTGGTACGCCACGCGCCGCCGCCG
CGGCAAACAGATGGAGTCGACAATGAAGAAGAAGCGCAGCGACGCCAGCC
GGCAGAGGTACGAGAACATATACAACGTGAGCGAGGGGCTTAAGGAGGTC
GTGGCGGAGGGAGGAGGAGGAGGAGGAGGAGGCTCCGAGACCGCTAAGGA
GTGGCACGAGTGGCAAGACGCTACCACCAGCGATAGCGACGATGGTGATA
AGGGCTGGTCGAGCTTCGGTGGCGGCGAGAGCAAGGCCGGGGGTGATGGG
GACGGGGAGGCCGCGTTGAGGGGTTCGAGGGACCTAACGAGGAAGACTGT
CGACGCCGTAAGGGTACTGGCGGAAATGGGGCGGATAGGCGAGGGGGAGA
AGAGCTTGCTGCTTGCGGACGTTATCCGAAACGCTCCCTCAGGTGTTGCT
AGCAAGGTGGAAATTGCGTACTCGGTACTGCTCGACGGGGAAGTGACGCC
GGAGGGGATGGAGTACACGGACAAGGCCGAAGAGTTCGCACACCAGTGCA
AGGCCATAGCCGGGCAGCTTCTGGAACAAAGCAACAGCAACCGGCCGGGG
CGGTGGAGGTTCTGGGCGAAGCCGCAATGGTGGAAATTCTGGGCGAGTAA
AGATTCCGAATAG
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