mRNA_Ecto-sp13_S_contig790.19177.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig790.19177.1
Unique NamemRNA_Ecto-sp13_S_contig790.19177.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig790.19177.1 vs. uniprot
Match: D8LSW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW2_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 3.540e-42
Identity = 84/95 (88.42%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    1 MTSVRQAGDISQGQASGGGQGPTASSGEQQHRQHVEEGGNVAHQPGNHMAEAMKRGGILGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE 285
            M SVRQA   SQGQASGGGQ PTASS EQQ  QHVEEGGNVAHQ GN MAEAMKRGGILGWGSYLTFAWAG FLKLGSTVTLKEEHLEGIYDKHE
Sbjct:    1 MGSVRQADQTSQGQASGGGQRPTASSREQQQSQHVEEGGNVAHQSGNLMAEAMKRGGILGWGSYLTFAWAGPFLKLGSTVTLKEEHLEGIYDKHE 95
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BLAST of mRNA_Ecto-sp13_S_contig790.19177.1 vs. uniprot
Match: A0A6H5JGA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA2_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.460e-39
Identity = 85/109 (77.98%), Postives = 91/109 (83.49%), Query Frame = 1 
Query:    1 MTSVRQAGDISQGQAS-GGGQGPTASSGEQQHRQHVEEGGNVAHQPGNHMAEAMKRGGILGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE--RCSKKRRKNLE 318
            M SVRQA + SQGQ S GGGQGPTAS GEQQ  +HVEEGG+VAHQPGN MAEAM+RGGILGWGSYLTFAWAG FLKLGST+TLKEEHLEGIY KHE  R   K R+N E
Sbjct:    1 MASVRQADEASQGQTSIGGGQGPTASPGEQQQHEHVEEGGDVAHQPGNRMAEAMQRGGILGWGSYLTFAWAGPFLKLGSTITLKEEHLEGIYHKHESRRLYDKLRRNWE 109
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BLAST of mRNA_Ecto-sp13_S_contig790.19177.1 vs. uniprot
Match: A0A6H5JHZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ3_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 2.720e-33
Identity = 78/97 (80.41%), Postives = 80/97 (82.47%), Query Frame = 1 
Query:    1 MTSVRQAGDISQGQAS-GGGQGPTASSGEQQHRQHVEEGGNVAHQ-PGNHMAEAMKRGGILGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE 285
            M SV QA   SQGQAS  GGQ  TASS EQQ RQH E+G NVAHQ P N MA AMKRGGI+GWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE
Sbjct:    1 MASVCQADKTSQGQASVRGGQDATASSREQQQRQHAEDGENVAHQQPDNRMAAAMKRGGIMGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE 97
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BLAST of mRNA_Ecto-sp13_S_contig790.19177.1 vs. uniprot
Match: A0A6H5K598_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K598_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.680e-19
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:  157 MKRGGILGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHER 288
            MKRGGI+GWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHER
Sbjct:   20 MKRGGIIGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHER 63
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BLAST of mRNA_Ecto-sp13_S_contig790.19177.1 vs. uniprot
Match: D8LSW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW6_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 6.220e-16
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:  145 MAEAMKRGGILGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE--RCSKKRRKNLE 318
            MAEA++RGGILGWGSYLTFAWAG FLKLGSTVTLKEEHLEGIY KHE  R   K R+N E
Sbjct:    1 MAEALQRGGILGWGSYLTFAWAGPFLKLGSTVTLKEEHLEGIYHKHESRRLYDKLRRNWE 60
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BLAST of mRNA_Ecto-sp13_S_contig790.19177.1 vs. uniprot
Match: A0A6H5JJK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK8_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.010e-9
Identity = 33/48 (68.75%), Postives = 36/48 (75.00%), Query Frame = -2 
Query: 1234 KVGTLTESLQYSFFQAAGSRRCV*VPHGQCATCSPVRGNASTSSAHHG 1377
            KVGTLTESLQ+S+F  AGS RCV VPHGQ AT SPVRG A   S+  G
Sbjct:    6 KVGTLTESLQHSYFPPAGSGRCVCVPHGQWATRSPVRGGAREFSSSRG 53
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig790.19177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LSW2_ECTSI3.540e-4288.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGA2_9PHAE1.460e-3977.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHZ3_9PHAE2.720e-3380.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K598_9PHAE1.680e-1997.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSW6_ECTSI6.220e-1680.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJK8_9PHAE1.010e-968.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig790contigEcto-sp13_S_contig790:151..3208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score94.4
Seed ortholog evalue5.2e-17
Seed eggNOG ortholog2880.D8LSW6
Model size1798
KEGG koko:K05673
KEGG TC3.A.1.208.7
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001640.1
Cds size468
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464060.7512581-UTR-Ecto-sp13_S_contig790:150..14801681464060.7512581-UTR-Ecto-sp13_S_contig790:150..1480Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig790 151..1480 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464060.7626083-CDS-Ecto-sp13_S_contig790:1480..16611681464060.7626083-CDS-Ecto-sp13_S_contig790:1480..1661Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig790 1481..1661 -
1681464060.771972-CDS-Ecto-sp13_S_contig790:2921..32081681464060.771972-CDS-Ecto-sp13_S_contig790:2921..3208Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig790 2922..3208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig790.19177.1prot_Ecto-sp13_S_contig790.19177.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig790 1481..3208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig790.19177.1

>prot_Ecto-sp13_S_contig790.19177.1 ID=prot_Ecto-sp13_S_contig790.19177.1|Name=mRNA_Ecto-sp13_S_contig790.19177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=156bp
MTSVRQAGDISQGQASGGGQGPTASSGEQQHRQHVEEGGNVAHQPGNHMA
EAMKRGGILGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHERCSKK
RRKNLEAPPGRRLRSATGYNPHMNALTAVRCTLRTVFGVPPVCAASKAAP
PAEQG*
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mRNA from alignment at Ecto-sp13_S_contig790:151..3208-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig790.19177.1 ID=mRNA_Ecto-sp13_S_contig790.19177.1|Name=mRNA_Ecto-sp13_S_contig790.19177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3058bp|location=Sequence derived from alignment at Ecto-sp13_S_contig790:151..3208- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTTCTGTCCGTCAAGCCGGCGACATCAGTCAAGGCCAAGCAAGCGG
AGGTGGCCAGGGCCCGACTGCTTCGTCCGGGGAACAGCAGCACCGCCAGC
ATGTTGAAGAGGGCGGGAATGTGGCCCATCAACCCGGCAACCACATGGCG
GAAGCCATGAAGAGAGGAGGCATCTTGGGCTGGGGATCCTACTTGACGTT
CGCCTGGGCAGGGTCTTTCCTCAAGCTCGGCTCCACTGTCACCCTCAAGG
AGGAGCACCTTGAAGGAATCTACGACAAGCACGAGAGGTGGGAAGCGGGA
CCAAACATGCTCAACGAAAGGGTTTCTCGGTGGCTGCCGCCGCCGCCGCG
CTGGTCAAAAGAGCGATTTTTAAGGGCGCACCAAGATATTGCTATGTTTT
TCTTGCGCAACAACATGTGACGACGGTGTGTTTTTGACGTGGGCATGTTT
CATATGTGCTTTGTGTGACATGTTGTTTCCGACGCTCGCGGCGGGCGTTG
ACTACATAAGTTGATCCGTCAGCAAAATTGGAAATGCCAAATGAATGTAT
GTTTATCCCCGAGATGCCAAAATAACAGTCTCGTGCGAATCACGATACTG
CCGTGTGCAGCCACAGAAACTAAAATCGGGTCCATTGAACCCGCCGGGAA
ACCGAGAGACCCTAAACAATCTCACTGACGAAGGCAGGACTGTGGCTGCG
GCTTTTTCGCCGGGATGTGTGAAGACGCAGAAACACACGACGGGGCGTTG
AACTCGAACCAAAGACCATCATGTCCCTTGGTGATGCCCGACTAAAATAT
CCATGGCCAAGAGACAAAGAAAGAGAGGACGGCAAACAGTAGTCCAGGAT
CATCGTGAACAAAAAATCCGGACACGTACAGTACATGTAGTCCCCCTCCC
TTCCCGGTAACGGAATTTCGTTTTCTGTTTTATATCGAAAAAGTTGTATG
GAAGGGGGCTTCGTTCGGGGACTGCTGTGTTCACGTTTGATTTTGCAGGG
ATGTTCACGTTATGGAACCGCACCGCGGTGCGGTATTTTGTATCTTGACA
TAGTCGCGGTGCGGTGCGGTGCGGTTTTTACCATCGCCAAATTCGACGGT
GCGGTGCGGTGCGGTACGGTTTTTTCCGTCTCGAATTCTGACGGTGCGAA
GCGGTTCACCGTCGCACGGATCTTTTTGACGGTGCGGTTTTTCTACCCCG
TGACAAAAACCGCGCGAACCTCGGCCTTGTCGGCGGTGCACCGTCGAAGA
ACACCGCGGAGAATACTACGGTTGTCCGTGACAAAATGACGGGGTCTCCA
TGATTACTTTTTTTTCGTGGAATATACGTACGTTAGGTTTAGTCCATTTT
TTGAACGAGGCCGGCACGACAGATCCCGCGACTTGCGGTCAAAAAAAACG
AAAACCCCAGACAAAGGAGAAGCTGCTGATCATTTACTTCATTTTTCCCG
TCACCATACATACGTTCCTACAACACGAGCTACATATCTCACTTGTTTCT
CGTCCTACTGCTGTTGTTGGGATTTATATACATGCGAATATGCGAAGATG
TTCGAAAAAACGGAGAAAAAATCTGGAAGCACCACCAGGCAGGCGACTCA
GGTCCGCCACGGGTTACAACCCGCACATGAATGCGTTGACGGCGGTGCGT
TGCACGCTACGAACTGTCTTCGGGGTGCCCCCAGTTTGCGCGGCATCAAA
AGCAGCACCACCAGCAGAGCAGGGGTAGAACCACCGGGAGAAGGAGATGG
ACGCGTGGCGACCACCTCTCTCTGCAAGAGGCTGGTCGCCATCGTCGGGG
GGTGACTCCATCAGAGATGGGCGGAGTAATGCACGGAGCGTATCGCAGTG
GTGGTGTGTGTGTGGCAGGGTGTGTGGTGTGGGAACACGGTTTTGCGTGT
GTGCTGGTTCAAGAAAAAAAGAACGTTCAACGTTCCTGGTGTGTGTGTGT
TTTTATTATTAGCATCGACCGCGCTAACCGGCGGACCAATAGAAAGACGT
CAGTCTTAGTGTGTGTTTGTGTCTGCACGACGAATCCGTGCCTTCCCTAC
GGTTTTTACCGCGGTTCACTGCGGTATATATCGCGGTGTTCTGCGGTGTC
GGCTACGGGGTGGTGTAAACCGCCCCGTAATAAAACCGCAACTACGGTTA
TTTGTTAATCCTTACGGTGCGGTGCGGTGCAATTTTGTCGTACCACGTTG
CGGTGCGGTGCGGTTTAACCGCACCGCACCGCACCGCACCGCACTTCCGA
AAAAAAGCGCACCGTGTACATCCCTGTATTTTTGTCATCTAAATTGAGGC
CCTGCAAAAAATAAGTTTCGGGGTGGTGCCTGGGGCCAAAGACGCTGATT
GGTCAGCAGGAAAATGCGCAAATAGGCTTTCTCTGCCCGGAAAAGCGGGA
CTTCGATATTGGGTGGAGCAAAAAACAGTTGCAAGTTGAATTATTTTTTG
CTGAAACGAAGTACCCGAGTTGCACTGCGCCCCTTTTGCACCCCCCGTGA
TGAGCTGAACTCGTGCTAGCGTTGCCCCTGACGGGACTGCATGTGGCACA
CTGGCCGTGCGGCACTCACACGCATCGCCTACTGCCCGCTGCTTGGAAAA
AGCTGTATTGCAATGATTCTGTGAGCGTGCCAACTTTTCGCGCTGGTTGG
GTAACTGTGGAGGTTGCTTTCCAACATGTGCGATGTCAACAGTCAACGGC
CGGTTGTGTGCAGCGAGACGGTCCAAACAACAGCTGTGGAGCAAGCCTGA
GGATGGGGGCTGGACCGCTGGCACCGCCTGCCGATGCTTAGCTTCGTGTG
TGTGTTGATATATTTCTACGGCTCCAGTGTGGTGCACATGGTCTATTGCT
GTACCTGGTTGGGTCACCACGTCACCTTCCTGCAGCGATTCCGCCGCATT
TGGGTATGTTGCTGAACTTGGGTGTTGCAAAAATGCTTTGAAACGACGCA
AGCCCTCTTGGCCGACAACCCATTTGGTTCATCCAATTTAGGTGTACGCA
ATTTAGGTGACGAAAATAAACGTTAATACACGGCCTCACGAACTGTCAGT
CATTAGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig790:151..3208-

>mRNA_Ecto-sp13_S_contig790.19177.1 ID=mRNA_Ecto-sp13_S_contig790.19177.1|Name=mRNA_Ecto-sp13_S_contig790.19177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig790:151..3208- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTTCTGTCCGTCAAGCCGGCGACATCAGTCAAGGCCAAGCAAGCGG
AGGTGGCCAGGGCCCGACTGCTTCGTCCGGGGAACAGCAGCACCGCCAGC
ATGTTGAAGAGGGCGGGAATGTGGCCCATCAACCCGGCAACCACATGGCG
GAAGCCATGAAGAGAGGAGGCATCTTGGGCTGGGGATCCTACTTGACGTT
CGCCTGGGCAGGGTCTTTCCTCAAGCTCGGCTCCACTGTCACCCTCAAGG
AGGAGCACCTTGAAGGAATCTACGACAAGCACGAGAGATGTTCGAAAAAA
CGGAGAAAAAATCTGGAAGCACCACCAGGCAGGCGACTCAGGTCCGCCAC
GGGTTACAACCCGCACATGAATGCGTTGACGGCGGTGCGTTGCACGCTAC
GAACTGTCTTCGGGGTGCCCCCAGTTTGCGCGGCATCAAAAGCAGCACCA
CCAGCAGAGCAGGGGTAG
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