mRNA_Ecto-sp13_S_contig7897.19175.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7897.19175.1
Unique NamemRNA_Ecto-sp13_S_contig7897.19175.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7897.19175.1 vs. uniprot
Match: A0A6H5KVK9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVK9_9PHAE)

HSP 1 Score: 510 bits (1314), Expect = 1.310e-176
Identity = 298/343 (86.88%), Postives = 301/343 (87.76%), Query Frame = 1 
Query:    1 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKEKSHELARSLRLLAKFSPLGWSKWRWQAFSSFKRTAQVFSMVAATMLLELNAFLVMNALEIPNNSNFNYIRMTVIFLVALLACSEYYEYCSNPACNRLGQNAWLILAIMQQVEILLWIKFFPQPLMNASSPPEVKLPWLATLSLFSLWVLLFVAVREDPADAAXXXXXXXXXXXXXXX---------------TSASESMSSMGSLLAGGSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDAGVNTKPRRRSSLSTSRTKRKTAMLVAKWGAVDAVFILSFIPLLFLVKQWSY 984
            QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKEKSHELARSLRLLAKFSPLGWSKWRWQAFSSFKRTAQVFSMVAATMLLELNAFLVMNALEIPNNSNFNYIRMTVIFLVALLACSEYYEYCSNPACNRLGQNAWLILAIMQ VEILLWIKFFPQPLMNASSPPEVKLPWLATLSLFSLWVLLFVAVREDPADAAXXXXXXXXXX XXXX               TSASESMSSMGSLL GGS+ XXXXXXXXX                     XXXXDDAGV+TKPRR +SLS SRTKRKTAMLVAKWGAVDAVFILSFIPLLFLVKQWSY
Sbjct:  239 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKEKSHELARSLRLLAKFSPLGWSKWRWQAFSSFKRTAQVFSMVAATMLLELNAFLVMNALEIPNNSNFNYIRMTVIFLVALLACSEYYEYCSNPACNRLGQNAWLILAIMQ-VEILLWIKFFPQPLMNASSPPEVKLPWLATLSLFSLWVLLFVAVREDPADAAXXXXXXXXXXPXXXXXXXXXXXXXXPAGGVTSASESMSSMGSLLDGGSSXXXXXXXXXXGQGYKTGGVSSSGKPDGCGEGXXXXDDAGVDTKPRRLNSLSASRTKRKTAMLVAKWGAVDAVFILSFIPLLFLVKQWSY 580
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BLAST of mRNA_Ecto-sp13_S_contig7897.19175.1 vs. uniprot
Match: A0A836CG66_9STRA (Phosphatidylserine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG66_9STRA)

HSP 1 Score: 222 bits (566), Expect = 2.210e-64
Identity = 108/206 (52.43%), Postives = 137/206 (66.50%), Query Frame = 1 
Query:    1 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKEKSH-----------ELARSL--RLLAKFSPLGWSKWRWQAFSSFKRTAQVFSMVAATMLLELNAFLVMNALEIPNNSNFNYIRMTVIFLVALLACSEYYEYCSNPACNRLGQNAWLILAIMQQVEILLWIKFFPQPLMNASSPPEVKLPWLATLSLFSLWVLL 579
            QF ECWWDS+ ID  GAN++GM LGL TLRFLE + YDW   EK             + AR L  R + +FSP  W KW W  F++FKR  Q+  +V  T+  ELNAF+++NAL++P  S +N +R+ +IFLV L A SEYYEY +N  C+RLGQNAWL+LAI Q VE L WIKF PQ L++A  PPEV+LP  AT  + +LW LL
Sbjct:  252 QFRECWWDSVFIDFFGANLIGMGLGLATLRFLENQDYDWKKGEKGEGRGKGAARRGSDAARGLLQRAVLQFSPFSWRKWEWGTFTTFKRFCQILGIVIVTLATELNAFMMLNALDVPKTSMYNVVRLAIIFLVGLPAVSEYYEYITNARCSRLGQNAWLMLAIFQ-VETLTWIKFMPQSLLDAEYPPEVRLPHAATACMLALWALL 456
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BLAST of mRNA_Ecto-sp13_S_contig7897.19175.1 vs. uniprot
Match: W7T078_9STRA (Phosphatidylserine synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T078_9STRA)

HSP 1 Score: 209 bits (531), Expect = 1.820e-61
Identity = 140/329 (42.55%), Postives = 202/329 (61.40%), Query Frame = 1 
Query:    1 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKEKSHELARSLRLLAKFSPLGWSKWRWQAFSSFKRTAQVFSMVAATMLLELNAFLVMNALEIPNNSNFNYIRMTVIFLVALLACSEYYEYCSNPACNRLGQNAWLILAIMQQVEILLWIKFFPQPLMNASSPPEVKLPWLATLSLFSLWVLLFVAVREDPADAAXXXXXXXXXXXXXXXTSASESMSSMGSLLAGGSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDAGVNT-KPRRRSSLSTSRTKRKTAMLVAKWGAVDAVFILSFIPLLFLVKQWSY 984
            +F ECWWDSL+ID+LGAN+LGM  G  TL+ LET  +DW+  +    + R+ RL+ + SP  ++++RW  FSSFKR  QV  ++  T+L+ELNAF++++ L+IP NS FN IR++++ L+A  A +EYY++ +NP  +RLG NAW ++A+MQ +E+++W+KF+P   +  + PPE+  PWLATL L  LW+LL + + ++                             +G  L G             XXXXXXXXXXXXXXXXXXXXXXXXX    +N  K +R   L     K  T  +V +   VD VF LSF+PLL+L++QW +
Sbjct:   59 EFKECWWDSLLIDVLGANLLGMGAGWLTLQALETHAFDWSGTQ-DQRVGRARRLIQRLSPYSFTRYRWSMFSSFKRFLQVIVLLLVTLLMELNAFMLLHTLQIPKNSAFNKIRLSLVALLAFPAAAEYYDFIANPYQSRLGPNAWCMMAVMQ-LEVVVWLKFWPSTFLIRTPPPEIGYPWLATLLLLGLWMLLSLTLVKE---------------------------QDLGRRLLGSGGRNGKKHNGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXALNGGKEKRAEGLGNLTGKEVTVGVVQE--IVDMVFFLSFLPLLYLIRQWVF 356
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BLAST of mRNA_Ecto-sp13_S_contig7897.19175.1 vs. uniprot
Match: I2CSE4_NANGC (Phosphatidylserine synthase 2 (Fragment) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=I2CSE4_NANGC)

HSP 1 Score: 204 bits (520), Expect = 2.280e-58
Identity = 92/200 (46.00%), Postives = 143/200 (71.50%), Query Frame = 1 
Query:    1 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKEKSHELARSLRLLAKFSPLGWSKWRWQAFSSFKRTAQVFSMVAATMLLELNAFLVMNALEIPNNSNFNYIRMTVIFLVALLACSEYYEYCSNPACNRLGQNAWLILAIMQQVEILLWIKFFPQPLMNASSPPEVKLPWLATLSLFSLWVLLFVAVRED 600
            +F ECWWDSL+ID+LGAN+LGM  G  TL+ LET  +DW+  +    + R+ RL+ + SP  ++++RW  FSSFKR  QV  ++  T+L+ELNAF++++ L+IP NS FN IR++++ L+A  A +EYY++ SNP  +RLG N W ++A+MQ +E+++W+KF+P   +  + PPE+  PWLATL L  LW+LL + + ++
Sbjct:  252 EFKECWWDSLLIDVLGANLLGMGAGWLTLQALETHAFDWSGTQ-DQRVGRARRLIQRLSPYSFTRYRWSMFSSFKRFLQVIVLLLVTLLMELNAFMLLHTLQIPKNSAFNKIRLSLVALLAFPAAAEYYDFISNPYQSRLGPNVWCMMAVMQ-LEVVVWLKFWPSTFLIRTPPPEIGYPWLATLLLLGLWMLLSLTLVKE 449
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BLAST of mRNA_Ecto-sp13_S_contig7897.19175.1 vs. uniprot
Match: K3W6F1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6F1_GLOUD)

HSP 1 Score: 200 bits (508), Expect = 5.820e-57
Identity = 93/195 (47.69%), Postives = 136/195 (69.74%), Query Frame = 1 
Query:    1 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKEKSHELARSLRLLAKFSPLGWSKWRWQAFSSFKRTAQVFSMVAATMLLELNAFLVMNALEIPNNSNFNYIRMTVIFLVALLACSEYYEYCSNPACNRLGQNAWLILAIMQQVEILLWIKFFPQPLMNASSPPEVKL-PWLATLSLFSLWVLLF 582
             F ECWWDSL +DLLGAN+LGM LG  TL + ET+ YDW+ K K  ++   L +L++F+P+ WS++ W+ FSSFKR AQ+   +   +L+ELNAF ++N L IP  SNFN  R++++FL+ +   +EYYE+ SNP C RLGQNAW+IL+I    E+L+W+KF    ++   +PP + L P LA  ++FS+W++ F
Sbjct:  213 DFQECWWDSLFMDLLGANLLGMFLGRLTLWYFETKEYDWSGK-KEKKMGYMLLVLSQFTPISWSQYHWEVFSSFKRFAQIMFALFVCLLVELNAFFLLNTLSIPKESNFNAYRLSLVFLIGIPGAAEYYEFLSNPECQRLGQNAWMILSIAV-FEVLVWVKFSANGVLFNDAPPALVLYPILAFAAMFSIWMVCF 405
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BLAST of mRNA_Ecto-sp13_S_contig7897.19175.1 vs. uniprot
Match: A0A5D6XXF1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXF1_9STRA)

HSP 1 Score: 199 bits (506), Expect = 2.390e-56
Identity = 96/199 (48.24%), Postives = 135/199 (67.84%), Query Frame = 1 
Query:    1 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKEKSHELARSLRLLAKFSPLGWSKWRWQAFSSFKRTAQVFSMVAATMLLELNAFLVMNALEIPNNSNFNYIRMTVIFLVALLACSEYYEYCSNPACNRLGQNAWLILAIMQQVEILLWIKFFPQPLMNASSPPE-VKLPWLATLSLFSLWVLLFVAVR 594
             F ECWWDSL +DLLGAN+LGM LG  TL  LET+ YDW+ K K  ++   L +L++F+P+ WS++ W+ FSSFKR AQV   +   +L+ELNAF ++N L IP  SNFN  R+ ++FL+ +   +EYYE+ SNP   RLGQNAW+IL++    E+L+W+KF    ++ A +PP  V LP LA + +FS+WV  F   +
Sbjct:  249 DFQECWWDSLFMDLLGANLLGMFLGRVTLWLLETKEYDWSGK-KEKKMGYVLLVLSQFTPISWSQYHWEVFSSFKRFAQVMFALFVCLLVELNAFFLLNTLSIPKESNFNAYRLALMFLIGIPGAAEYYEFLSNPEALRLGQNAWMILSVAS-FEVLVWVKFSANGVLFADAPPALVALPILAFVCMFSVWVACFFVAQ 445
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BLAST of mRNA_Ecto-sp13_S_contig7897.19175.1 vs. uniprot
Match: A0A067CA10_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CA10_SAPPC)

HSP 1 Score: 194 bits (493), Expect = 9.460e-55
Identity = 95/199 (47.74%), Postives = 134/199 (67.34%), Query Frame = 1 
Query:    1 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKEKSHELARSLRLLAKFSPLGWSKWRWQAFSSFKRTAQVFSMVAATMLLELNAFLVMNALEIPNNSNFNYIRMTVIFLVALLACSEYYEYCSNPACNRLGQNAWLILAIMQQVEILLWIKFFPQPLMNASSPPEVKLPWLATLSLFSLWVLLFVAVRE 597
             F ECWWDSL +DL GAN +GM LG  TL++LET+ YDW+ K+         R L++F+P  WS++ W+ FSSFKR A V   V   +L+ELNAF +++ L IP  S+ N  R+ +IF++ L A SEY+E+ +NPAC RLGQNAW++ +I    E+L+W+KF       ++ PP+V LP LA  +LFSLW+LLF + R+
Sbjct:  231 DFQECWWDSLFMDLFGANFIGMCLGRLTLKYLETKEYDWSGKKGYVR-----RALSQFTPFSWSRYDWEVFSSFKRFALVAVAVFVCLLVELNAFFLLSTLNIPKESHINKYRLGLIFMLGLPAASEYFEFVTNPACWRLGQNAWMMCSI-GVFEVLVWVKFADGLAGTSTPPPDVYLPLLAFSALFSLWMLLFFSQRK 423
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BLAST of mRNA_Ecto-sp13_S_contig7897.19175.1 vs. uniprot
Match: A0A2D4BLI8_PYTIN (Phosphatidylserine synthase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLI8_PYTIN)

HSP 1 Score: 197 bits (500), Expect = 1.050e-54
Identity = 95/196 (48.47%), Postives = 130/196 (66.33%), Query Frame = 1 
Query:    1 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKEKSHELARSLRLLAKFSPLGWSKWRWQAFSSFKRTAQVFSMVAATMLLELNAFLVMNALEIPNNSNFNYIRMTVIFLVALLACSEYYEYCSNPACNRLGQNAWLILAIMQQVEILLWIKFFPQPLMNASSPPEVKLPWLATLSLFSLWVLLFVA 588
             F ECWWDS+ +DLLGAN+ GM LG  TL   ET+ YDW+ K +  ++   LR L +F+PL W ++ W+ FSSF R AQV   +   +++ELNAF ++N L IP  SNFN  R+T++FL+ +   +EYYE+ SNP C RLGQNAW+IL+I    E+L+W KF    L     P EV +P LA L +F++W+LLF A
Sbjct:  305 DFQECWWDSVFMDLLGANLXGMALGRLTLHVFETKVYDWSGKREK-KMGVLLRALNQFTPLSWMQYHWEVFSSFSRFAQVMFCLVVCLVVELNAFFLLNTLSIPKESNFNAYRLTLMFLIGIPGAAEYYEFLSNPDCWRLGQNAWMILSIAV-FEVLVWFKFSGGILFTELPPLEVAVPILAFLVMFAVWMLLFFA 498
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BLAST of mRNA_Ecto-sp13_S_contig7897.19175.1 vs. uniprot
Match: A0A0P1AES6_PLAHL (Phosphatidylserine synthase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AES6_PLAHL)

HSP 1 Score: 189 bits (481), Expect = 5.390e-53
Identity = 89/200 (44.50%), Postives = 134/200 (67.00%), Query Frame = 1 
Query:    1 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKEKSHELARSLRLLAKFSPLGWSKWRWQAFSSFKRTAQVFSMVAATMLLELNAFLVMNALEIPNNSNFNYIRMTVIFLVALLACSEYYEYCSNPACNRLGQNAWLILAIMQQVEILLWIKFFPQPLMNASSPPEVKL-PWLATLSLFSLWVLLFVAVRE 597
             F ECWWDSL++DLLGAN+LGM LG  TL  LE++ YDW+ + +  ++      L +F+PL W ++ W+ FSSF R A++    A  +L+E+NAF ++  L IP  SNFN  R+ ++FL+ + A +EYYE+ +NP C RLGQNAW+IL+I    E+L+W+KF    ++   +PP + L P LA + +FS+W+LLF   ++
Sbjct:  219 DFQECWWDSLMLDLLGANMLGMCLGRITLWLLESKEYDWSGR-RGKKMGYFRLALNQFTPLRWEQYHWEVFSSFSRFAEIVFAFAMCLLMEMNAFFLLTTLSIPKESNFNSYRLLLVFLLGIPAAAEYYEFITNPECWRLGQNAWMILSIAT-FEVLVWVKFSANGVLFTKAPPSLVLYPILAFMVMFSIWMLLFFCQKQ 416
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BLAST of mRNA_Ecto-sp13_S_contig7897.19175.1 vs. uniprot
Match: A0A1V9Z169_9STRA (Phosphatidylserine synthase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z169_9STRA)

HSP 1 Score: 189 bits (480), Expect = 7.560e-53
Identity = 97/197 (49.24%), Postives = 133/197 (67.51%), Query Frame = 1 
Query:    1 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKEKSHELARSLRLLAKFSPLGWSKWRWQAFSSFKRTAQVFSMVAATMLLELNAFLVMNALEIPNNSNFNYIRMTVIFLVALLACSEYYEYCSNPACNRLGQNAWLILAIMQQVEILLWIKFFPQPLMNASSPP-EVKLPWLATLSLFSLWVLLFVA 588
             F ECWWDSL +DL GAN +GM LG  TL++LET+ YDW S  K  +     R L++F+P  WS++ W+ FSSFKR A V   V   +L+ELNAF +++ L IP  S+ N  R+ ++F++ L A SEYYE+ +NPAC RLGQNAW++ +I    E+L+W+KF    L+ AS+PP +V LP LA   LF LW++LF A
Sbjct:  227 DFQECWWDSLFMDLFGANFIGMCLGHLTLKYLETKEYDW-SGNKGDKRGYVRRALSQFTPFSWSRYDWEVFSSFKRFALVAGAVFVCLLVELNAFFLLSTLNIPKESHINKYRLCLLFMLGLPAASEYYEFITNPACWRLGQNAWMMCSI-GVFEVLVWVKF-ADGLVGASTPPADVYLPLLAFGFLFLLWMVLFFA 420
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7897.19175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVK9_9PHAE1.310e-17686.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CG66_9STRA2.210e-6452.43Phosphatidylserine synthase n=1 Tax=Tribonema minu... [more]
W7T078_9STRA1.820e-6142.55Phosphatidylserine synthase n=1 Tax=Nannochloropsi... [more]
I2CSE4_NANGC2.280e-5846.00Phosphatidylserine synthase 2 (Fragment) n=2 Tax=M... [more]
K3W6F1_GLOUD5.820e-5747.69Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XXF1_9STRA2.390e-5648.24Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A067CA10_SAPPC9.460e-5547.74Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A2D4BLI8_PYTIN1.050e-5448.47Phosphatidylserine synthase n=2 Tax=Pythium insidi... [more]
A0A0P1AES6_PLAHL5.390e-5344.50Phosphatidylserine synthase n=1 Tax=Plasmopara hal... [more]
A0A1V9Z169_9STRA7.560e-5349.24Phosphatidylserine synthase n=1 Tax=Achlya hypogyn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7897contigEcto-sp13_S_contig7897:208..4591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score471.5
Seed ortholog evalue3.3e-130
Seed eggNOG ortholog2880.D7FVQ2
Preferred namePTDSS1
Model size987
KEGG rclassRC00017,RC02950
KEGG koko:K08729,ko:K08730
KEGG ReactionR07376,R07377
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006658,GO:0006659,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0019637,GO:0031984,GO:0042175,GO:0042398,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0098827,GO:1901564,GO:1901566,GO:1901576
Exons5
EggNOG free text desc.Phosphatidylserine synthase
EggNOG OGsKOG2735@1,KOG2735@2759
EC2.7.8.29
Cds size987
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464060.6390655-CDS-Ecto-sp13_S_contig7897:207..3631681464060.6390655-CDS-Ecto-sp13_S_contig7897:207..363Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7897 208..363 +
1681464060.6520543-CDS-Ecto-sp13_S_contig7897:2239..23891681464060.6520543-CDS-Ecto-sp13_S_contig7897:2239..2389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7897 2240..2389 +
1681464060.664849-CDS-Ecto-sp13_S_contig7897:3154..33041681464060.664849-CDS-Ecto-sp13_S_contig7897:3154..3304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7897 3155..3304 +
1681464060.6814544-CDS-Ecto-sp13_S_contig7897:3662..40691681464060.6814544-CDS-Ecto-sp13_S_contig7897:3662..4069Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7897 3663..4069 +
1681464060.6926508-CDS-Ecto-sp13_S_contig7897:4467..45911681464060.6926508-CDS-Ecto-sp13_S_contig7897:4467..4591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7897 4468..4591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7897.19175.1prot_Ecto-sp13_S_contig7897.19175.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7897 208..4591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7897.19175.1

>prot_Ecto-sp13_S_contig7897.19175.1 ID=prot_Ecto-sp13_S_contig7897.19175.1|Name=mRNA_Ecto-sp13_S_contig7897.19175.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=329bp
QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKEKSHELAR
SLRLLAKFSPLGWSKWRWQAFSSFKRTAQVFSMVAATMLLELNAFLVMNA
LEIPNNSNFNYIRMTVIFLVALLACSEYYEYCSNPACNRLGQNAWLILAI
MQQVEILLWIKFFPQPLMNASSPPEVKLPWLATLSLFSLWVLLFVAVRED
PADAAAAAGGGGAGALAGGGTSASESMSSMGSLLAGGSNGGSVGDGGGDG
QGGKTGGVSGSGKPDGCGEGGGGGDDAGVNTKPRRRSSLSTSRTKRKTAM
LVAKWGAVDAVFILSFIPLLFLVKQWSY*
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mRNA from alignment at Ecto-sp13_S_contig7897:208..4591+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7897.19175.1 ID=mRNA_Ecto-sp13_S_contig7897.19175.1|Name=mRNA_Ecto-sp13_S_contig7897.19175.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7897:208..4591+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTCCACGAGTGCTGGTGGGACTCCCTGATCATCGACCTGCTGGGCGC
AAACGTTCTCGGCATGACCCTGGGGCTCTACACGCTCAGGTTCCTGGAAA
CGAGGACCTACGACTGGAACAGCAAGGAGAAGTCGCACGAGCTGGCGAGA
TCTCTGGTGAGGGGGCGAGCTTATAGGCCAGCAAGCAAGCACCCCCGTAG
TATGTATTGCGTGGGCGTGCCGGTGTTGTTGTTATCGTCTACACTTGTCT
GAGGCGAGAGAGGAGGCCGGGTGGTGATGCTTTTTTTCAGGGATGTTCAC
GGTGCGGTTTTTCTCGACGGTGCGGTGATGTGCGGTGCGGTTTAACCGCA
CCGCACCGCACTGTGACATTTCGGGATGAAAAAACCGCACCGCACCGCAC
CGCACCGTAAGGATTCACGAATAACCGTAGTTGCAGTTTTGTTACGATGC
GGGTTGCCCCACCCCGTAGGCAAAACCGCAGTACACCGCGATGAAAAACG
CCGTAAATCGCGGTAAAAACCGCGGGTAAGGCACGGTTTCGTGGTGCAGA
CACACACACACATGTAGCAAATATATAGCGCATGAGCATTGTACGAGCGT
TCCATGAACGTTGTATGAGCGCTCATTGGATATTTTGAATTTTCTTTGGA
TAGGATATTTGGAGTCGTTGAGGGGAATTGAAATAGCTTGAAGGAAGATC
AAAATCCCAGCCCCGCTCCCTCACTCTCCAAGTGGGCGCTGAGCGGACCT
GGTCCAAGAAGGCTAAAACAAGGTATTAAACAACAACTGTGAGTACCCGA
AGCCAGGAGCAACGAACTTGCTCCCTCCTTCTTTTACTTCTCTGTTCCCC
CATAACACACACCAGGAAAATTGAACTTTTTTTTTTTTGAACCAGCACAC
ACGCAACACCGTGTTCCCACACCACACACCCTGCCACCTGCCACACACAC
ATACCGCCACTGCGATACGCTCCGTGCATAGCCCCGCCCATCTCCGATGG
AGTCACCCCCCGACGATGGCGACCAGCCTCTTGCAGAGAGAGGTGGTCGC
CACGCGTCCATCTCCTTCTCCCGGTGGTTCTACCACTGCTCTGCTGGTGC
TGCTGATGCCGCGCAAACTGGGGGCACCCCGAAGACAGTTCGCAGCGTGC
AACGCACCACCGCCAACGCATTCGCGGGTTGTAGCCCGTGGCGGGCATGA
GCCGCCTGCCTGGTGGTGCTGCCAGATTTTTTCTTCATTTATTCTAGCAT
GTTCGTTATATATTCGCATGTATATTCCAACAACAGTAGTAGTAAGCAAA
CGAGGAATGTAGCTCGTGGTGTGGGAATGTATGGTGACTGGGACAATGAA
GTAAATGATCAGTAGCTTCTTCTTTGTCTGGGGTTTTCGGGTTTTCTCAC
CGCAAGCCGCGGGATCTGTCGTGCCGGCCTCATTTCCATGGACTAAACCT
AACGTATTCCACGAAAAAAAAATAATAATGGAGACCCCGTCATTTTGTCA
CGGATAACTGCAGTATTCTCCGTGGTGTTATTCGACGGTGCACCGCCGAC
AAGGCCGAGGTTCGCGCGGTTTTTGTTACGGGGTAGAAAAAATCGCACCG
TAAAAAAAAACGTGCGACGGCGAACCGCATCGCACCGCACCGTCACATTT
CGAGATGAAAAAAAACGCACCGCACCGCACCGTCGAATTTGGAGATGGTA
AAAAGCGCACCGCACCGCACCGCACCGCGACCATGTCAAGATACAAAAAA
CCGCAGCGCGGTGCGGTTCCACGCCGTGAACATCCCTGCTTTTTTTGCCC
GGACTGCCCCCCTCTCCCGGTTCCGGTCACTGCTCTCCCCCATCTCCCGA
CCTACCCCCGCCTCCGACACCCAGTAGAACGCTTCGAACGTTTTTTGCTC
ACATGTTGTCGTGTCTTTCTCGTACGAACTCAAAATTCATTGGGGCAGTC
GGCAAGATCTTCTGGTAATCGAGACTATTCTGTCCCCCCCGTCCCGTCCC
GTCCCACTGGTGTTTGTCGTTGCGGTGATCAGCGCCTGCTTGCCAAGTTC
TCCCCGCTCGGCTGGAGCAAGTGGCGGTGGCAGGCCTTCAGCAGCTTCAA
GAGGACGGCGCAGGTGTTCTCGATGGTCGCGGCCACGATGCTTCTGGAGC
TCAACGCCTTCCTGGTGATGAACGCCCTAGAGGTGAGGGGATGAAAACAA
ACTAATCGGGAGTGTGGATTTTTTAGGGCGTGGTGAGGATGTGGACGGTG
TAGTCCTCTGCGTGTCCCCCTCTGATATGGTAGGTGTTGAGCAGTCGGTA
CGTATCGTGAATCGCTTCAGTCGTCGGCGCTTAATTCTGTGCGGCGTGTT
GTGTTCAGGACTGTTGGGTGTCTTCTCTACGACACGTTACTTTTATCCCG
GTTGTACTAAGACCAAAACACGTGCCTTGAACAGGACAGTGAGGGTGTTT
GGGGGGAAAATATCACGAGGATGGTCGAGCCCGTCTTCCAGCAGCGTGAT
CTTCTGAAAGTCGTAAAACAATCTGTGTTGGCAAGCACTCGCTCCACTGA
GGTGGCGATGTTTTTGAAGGCCACGCACACCAAGTGCCTTGTGTAACTGA
CCGCTCTTGTGCCTGGCTGACGATGTCTGGCATAGTTAAACTGCGAGTTT
GTTGCGGTCATATGGTAGTTGTTCCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTTGCTGCTACTATCGTTGCTGTTGCTGGAGTAGCAACCCGAT
AGGCGGGATTCGCGTAAGCCTCCTCCAAAAACCGTCATCTACCCTCACCC
CCTCTTGGTTTCTCTTTTTTTCTCCTGCTCTTTCCTTCGCTTCCCTTCTT
TCCTTCCGTTCTTTGCTCCCTTGTTTCAATCCTCTGCTTCGCTGTTCTTT
TCCTCTTCTTTCCTTCTCTTCCGTCGTCTCCCTTCCCCGCGCTGAAGATC
CCCAACAATTCTAACTTCAACTACATCCGCATGACGGTCATCTTCCTGGT
GGCCCTGTTGGCATGCAGCGAGTACTACGAGTACTGCTCCAACCCCGCCT
GCAACCGGCTGGGGCAAAACGCCTGGCTTATTCTTGCCATCATGCAGGTG
ATTTCATGCTCAACGTATAGTATAGTAGCAGAATTGGATGACTTCTACTG
GCAAAACAGTCTTCTATCTGTTTCTAGAGCGTCCTCTTTCATCGTAGCAT
AATAGTCTTACGAGAGGGATGTGGCGGTGTTTGGGAGGGTAAGCAAGGCG
CGCGAACAGTTCAGGTGAAGTCAAGGTCTAAGACCCTGGCTGATGTTTGT
TCGTATTTTGCATGAGCAAAGTAGTTTGCTCTCCCGCTTTCCTGTATGTC
ACGCGAGGGATGTGTTCAACACCCCTAACAAAATCGTCCACCTCGTGTCC
CGTCCCCGCGCCCTGCTGTCCTGGGGGGGGGGGGGCTCCGGGGGGTTGGA
GAGAGCAGGTGGAGATCCTACTGTGGATCAAGTTTTTCCCGCAGCCACTC
ATGAACGCGTCCTCGCCCCCCGAGGTCAAGCTTCCTTGGCTCGCCACCCT
GAGCCTCTTTAGCCTATGGGTGTTGCTCTTCGTGGCGGTAAGAGAGGACC
CCGCAGATGCGGCGGCAGCGGCAGGGGGGGGGGGGGCGGGGGCACTGGCC
GGGGGGGGGACGAGCGCGTCGGAGTCGATGAGCTCGATGGGGTCGCTTCT
AGCCGGCGGTAGTAACGGCGGCAGTGTTGGCGACGGCGGTGGTGATGGGC
AGGGGGGTAAGACCGGGGGGGTTAGCGGCAGCGGCAAGCCGGACGGCTGC
GGCGAAGGTGGAGGAGGTGGTGATGACGCCGGCGTCAACACCAAGCCGCG
GAGACGTAGCAGGTGAGACCGACCAACCAGCCGCCCTGGGGTATCCGGTA
AGCTACGGAGCTGTCCAATTGCAATCACTGCTGTCTTGAAGGGTGTCGTC
GCAGACATCCGTCCGTGTCAAGGACGACGGCGGCACGTGGGGTTTCCACC
CGCGGGATGGACGGGGGGCGGGAGATACAGGCTGAAACGCTATTAATCGC
GGCGTTATGGGAATGGTAGCTTTTGTTCCTGTCGTTGTTGTTGTTGTTGT
TGTTGTTGTTGCCCCGCAGTGAAGATTACGATTGTGTCGACCTTGTTATC
CACGCATACGCGAGGAGAGTAAACACTTGGCTGGCTTTGATTTCCCGCAC
CCGTCTCTACTCTGTCTCTTCCTCTTTCACGCCCCCCGCCCCGGGCATGA
CCTACGGCAGCCTGTCGACCAGTCGAACAAAGCGCAAGACGGCCATGCTG
GTGGCCAAGTGGGGCGCGGTGGACGCTGTGTTCATCCTGTCCTTCATTCC
CCTCCTTTTCCTCGTCAAGCAGTGGTCGTACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7897:208..4591+

>mRNA_Ecto-sp13_S_contig7897.19175.1 ID=mRNA_Ecto-sp13_S_contig7897.19175.1|Name=mRNA_Ecto-sp13_S_contig7897.19175.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=987bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7897:208..4591+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTCCACGAGTGCTGGTGGGACTCCCTGATCATCGACCTGCTGGGCGC
AAACGTTCTCGGCATGACCCTGGGGCTCTACACGCTCAGGTTCCTGGAAA
CGAGGACCTACGACTGGAACAGCAAGGAGAAGTCGCACGAGCTGGCGAGA
TCTCTGCGCCTGCTTGCCAAGTTCTCCCCGCTCGGCTGGAGCAAGTGGCG
GTGGCAGGCCTTCAGCAGCTTCAAGAGGACGGCGCAGGTGTTCTCGATGG
TCGCGGCCACGATGCTTCTGGAGCTCAACGCCTTCCTGGTGATGAACGCC
CTAGAGATCCCCAACAATTCTAACTTCAACTACATCCGCATGACGGTCAT
CTTCCTGGTGGCCCTGTTGGCATGCAGCGAGTACTACGAGTACTGCTCCA
ACCCCGCCTGCAACCGGCTGGGGCAAAACGCCTGGCTTATTCTTGCCATC
ATGCAGCAGGTGGAGATCCTACTGTGGATCAAGTTTTTCCCGCAGCCACT
CATGAACGCGTCCTCGCCCCCCGAGGTCAAGCTTCCTTGGCTCGCCACCC
TGAGCCTCTTTAGCCTATGGGTGTTGCTCTTCGTGGCGGTAAGAGAGGAC
CCCGCAGATGCGGCGGCAGCGGCAGGGGGGGGGGGGGCGGGGGCACTGGC
CGGGGGGGGGACGAGCGCGTCGGAGTCGATGAGCTCGATGGGGTCGCTTC
TAGCCGGCGGTAGTAACGGCGGCAGTGTTGGCGACGGCGGTGGTGATGGG
CAGGGGGGTAAGACCGGGGGGGTTAGCGGCAGCGGCAAGCCGGACGGCTG
CGGCGAAGGTGGAGGAGGTGGTGATGACGCCGGCGTCAACACCAAGCCGC
GGAGACGTAGCAGCCTGTCGACCAGTCGAACAAAGCGCAAGACGGCCATG
CTGGTGGCCAAGTGGGGCGCGGTGGACGCTGTGTTCATCCTGTCCTTCAT
TCCCCTCCTTTTCCTCGTCAAGCAGTGGTCGTACTGA
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