mRNA_Ecto-sp13_S_contig78968.19173.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78968.19173.1
Unique NamemRNA_Ecto-sp13_S_contig78968.19173.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig78968.19173.1 vs. uniprot
Match: D7G0G2_ECTSI (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G2_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 3.830e-54
Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 1 
Query:    1 LVQTTMKMFSPAECVEFLEASDKPRPLVIRANTLKTRRKDLAEALIKRGVSLEPVAKWSKVGLKITESQIPIGATPEYLAGHYMLQSAASMCPVMALAPQQ 303
            LV   + MFSPAECVEFLEASDKPRPLVIRANTLKTRRKDLAEALIKRGVSLEPVAKWSKVGLKITESQIPIGATPEYLAGHYMLQSAASMCPVMALAPQQ
Sbjct:  358 LVDMFLLMFSPAECVEFLEASDKPRPLVIRANTLKTRRKDLAEALIKRGVSLEPVAKWSKVGLKITESQIPIGATPEYLAGHYMLQSAASMCPVMALAPQQ 458
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BLAST of mRNA_Ecto-sp13_S_contig78968.19173.1 vs. uniprot
Match: A0A6H5JZZ2_9PHAE (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ2_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 5.530e-53
Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 1 
Query:    1 LVQTTMKMFSPAECVEFLEASDKPRPLVIRANTLKTRRKDLAEALIKRGVSLEPVAKWSKVGLKITESQIPIGATPEYLAGHYMLQSAASMCPVMALAPQQ 303
            LV   + MFSPAECVEFLEASDKPRPLVIRANTLKTRRKDLAEALIKRGVSLEPVAKWSKVGLKITESQIPIGATPEYLAGHYMLQSAASMCPVMALAPQQ
Sbjct:  358 LVDMFLLMFSPAECVEFLEASDKPRPLVIRANTLKTRRKDLAEALIKRGVSLEPVAKWSKVGLKITESQIPIGATPEYLAGHYMLQSAASMCPVMALAPQQ 458
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BLAST of mRNA_Ecto-sp13_S_contig78968.19173.1 vs. uniprot
Match: A0A836CI73_9STRA (Ribosomal RNA methyltransferase nop2like protein put n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI73_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.670e-47
Identity = 84/100 (84.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:    1 LVQTTMKMFSPAECVEFLEASDKPRPLVIRANTLKTRRKDLAEALIKRGVSLEPVAKWSKVGLKITESQIPIGATPEYLAGHYMLQSAASMCPVMALAPQ 300
            L+   ++MFSPAE VEF+EASD+PRP+VIR NTLKTRRKDLAEALIKRGVSLEPVA WSKVGLK+TES +PIGATPEYLAGHYMLQSAASMCPVMAL PQ
Sbjct:  256 LIDLFLRMFSPAEAVEFMEASDRPRPVVIRTNTLKTRRKDLAEALIKRGVSLEPVAAWSKVGLKVTESTVPIGATPEYLAGHYMLQSAASMCPVMALDPQ 355
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BLAST of mRNA_Ecto-sp13_S_contig78968.19173.1 vs. uniprot
Match: A0A7S2KVL9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KVL9_9STRA)

HSP 1 Score: 160 bits (406), Expect = 2.010e-45
Identity = 75/100 (75.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:    1 LVQTTMKMFSPAECVEFLEASDKPRPLVIRANTLKTRRKDLAEALIKRGVSLEPVAKWSKVGLKITESQIPIGATPEYLAGHYMLQSAASMCPVMALAPQ 300
            L++  + MF+P EC+EFL+ASD PRPLVIR NTLK RRKDLA+AL+KRG++L+P+AKWSKVGLKI+ES +P+GATPEYLAG+YMLQSAASMCPVMAL+PQ
Sbjct:  204 LIELFLNMFNPTECLEFLDASDMPRPLVIRTNTLKVRRKDLAQALMKRGINLDPLAKWSKVGLKISESPVPVGATPEYLAGYYMLQSAASMCPVMALSPQ 303
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BLAST of mRNA_Ecto-sp13_S_contig78968.19173.1 vs. uniprot
Match: K3WHE3_GLOUD (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHE3_GLOUD)

HSP 1 Score: 160 bits (405), Expect = 4.030e-45
Identity = 77/100 (77.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 LVQTTMKMFSPAECVEFLEASDKPRPLVIRANTLKTRRKDLAEALIKRGVSLEPVAKWSKVGLKITESQIPIGATPEYLAGHYMLQSAASMCPVMALAPQ 300
            L+   MKMFSPAEC+EF+EA+++PRPLVIR NTLKTRR+DLA+ALI+RGV+L+P+AKWSKVGLKI +S +PIGATPEYLAGHYMLQSA+S+C VMALAPQ
Sbjct:   75 LIDMFMKMFSPAECLEFVEANEQPRPLVIRTNTLKTRRRDLAQALIQRGVNLDPLAKWSKVGLKIYDSPVPIGATPEYLAGHYMLQSASSICAVMALAPQ 174
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BLAST of mRNA_Ecto-sp13_S_contig78968.19173.1 vs. uniprot
Match: A0A7S2YBT5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YBT5_9STRA)

HSP 1 Score: 152 bits (384), Expect = 7.010e-45
Identity = 74/100 (74.00%), Postives = 85/100 (85.00%), Query Frame = 1 
Query:    1 LVQTTMKMFSPAECVEFLEASDKPRPLVIRANTLKTRRKDLAEALIKRGVSLEPVAKWSKVGLKITESQIPIGATPEYLAGHYMLQSAASMCPVMALAPQ 300
            LV+  + M  P E +EF++ASDKPRPLVIR NTLK RRKDLA  LIKRGVSL+P+A WSKVGLKI ES +PIGATPEYL GHYMLQSAASMCPV+AL+P+
Sbjct:   56 LVEYFVSMLGPTEALEFIDASDKPRPLVIRTNTLKVRRKDLAAGLIKRGVSLDPLANWSKVGLKIVESPVPIGATPEYLGGHYMLQSAASMCPVLALSPE 155
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BLAST of mRNA_Ecto-sp13_S_contig78968.19173.1 vs. uniprot
Match: A0A662WYH6_9STRA (SAM_MT_RSMB_NOP domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WYH6_9STRA)

HSP 1 Score: 156 bits (394), Expect = 8.300e-45
Identity = 75/100 (75.00%), Postives = 91/100 (91.00%), Query Frame = 1 
Query:    1 LVQTTMKMFSPAECVEFLEASDKPRPLVIRANTLKTRRKDLAEALIKRGVSLEPVAKWSKVGLKITESQIPIGATPEYLAGHYMLQSAASMCPVMALAPQ 300
            L+   + MFSPAECVEF+EA+++PRPLVIR NTLK RR+DLA+ALI+RGV+L+P+AKWSKVGLKI +S +PIGATPEYLAGHYMLQSA+S+C VMALAPQ
Sbjct:  207 LIDMFLTMFSPAECVEFVEANEQPRPLVIRTNTLKARRRDLAQALIQRGVNLDPLAKWSKVGLKIYDSPVPIGATPEYLAGHYMLQSASSICAVMALAPQ 306
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BLAST of mRNA_Ecto-sp13_S_contig78968.19173.1 vs. uniprot
Match: F0YHS7_AURAN (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHS7_AURAN)

HSP 1 Score: 157 bits (396), Expect = 1.170e-44
Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = 1 
Query:    1 LVQTTMKMFSPAECVEFLEASDKPRPLVIRANTLKTRRKDLAEALIKRGVSLEPVAKWSKVGLKITESQIPIGATPEYLAGHYMLQSAASMCPVMALAPQ 300
            L +  + +FSP+ECVEF++A+DKPRP+VIR NTLKTRRKDLA+ LIKRGV LEP+A WSKV LKITES +P+GATPEYLAGHYMLQSAAS CPV+AL P+
Sbjct:   59 LTELFLTIFSPSECVEFMDANDKPRPVVIRTNTLKTRRKDLAQTLIKRGVHLEPMAAWSKVALKITESSVPVGATPEYLAGHYMLQSAASQCPVLALGPE 158
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BLAST of mRNA_Ecto-sp13_S_contig78968.19173.1 vs. uniprot
Match: B8C1V6_THAPS (SAM_MT_RSMB_NOP domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1V6_THAPS)

HSP 1 Score: 159 bits (402), Expect = 1.520e-44
Identity = 79/100 (79.00%), Postives = 86/100 (86.00%), Query Frame = 1 
Query:    1 LVQTTMKMFSPAECVEFLEASDKPRPLVIRANTLKTRRKDLAEALIKRGVSLEPVAKWSKVGLKITESQIPIGATPEYLAGHYMLQSAASMCPVMALAPQ 300
            LV   + MF P EC+EFLEASDKPRPLV+R NTLK RRKDLA AL+KRGV L+P+A WSKVGLKI ES +PIGATPEYLAGHYMLQSAASMCPVMAL PQ
Sbjct:  130 LVDYFLSMFGPNECLEFLEASDKPRPLVVRVNTLKARRKDLAAALMKRGVRLDPLAPWSKVGLKIYESTVPIGATPEYLAGHYMLQSAASMCPVMALGPQ 229
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BLAST of mRNA_Ecto-sp13_S_contig78968.19173.1 vs. uniprot
Match: A0A7S2KX50_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KX50_9STRA)

HSP 1 Score: 160 bits (406), Expect = 2.330e-44
Identity = 75/100 (75.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:    1 LVQTTMKMFSPAECVEFLEASDKPRPLVIRANTLKTRRKDLAEALIKRGVSLEPVAKWSKVGLKITESQIPIGATPEYLAGHYMLQSAASMCPVMALAPQ 300
            L++  + MF+P EC+EFL+ASD PRPLVIR NTLK RRKDLA+AL+KRG++L+P+AKWSKVGLKI+ES +P+GATPEYLAG+YMLQSAASMCPVMAL+PQ
Sbjct:  204 LIELFLNMFNPTECLEFLDASDMPRPLVIRTNTLKVRRKDLAQALMKRGINLDPLAKWSKVGLKISESPVPVGATPEYLAGYYMLQSAASMCPVMALSPQ 303
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78968.19173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0G2_ECTSI3.830e-5495.05SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A6H5JZZ2_9PHAE5.530e-5395.05SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A836CI73_9STRA1.670e-4784.00Ribosomal RNA methyltransferase nop2like protein p... [more]
A0A7S2KVL9_9STRA2.010e-4575.00Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
K3WHE3_GLOUD4.030e-4577.00SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A7S2YBT5_9STRA7.010e-4574.00Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A662WYH6_9STRA8.300e-4575.00SAM_MT_RSMB_NOP domain-containing protein (Fragmen... [more]
F0YHS7_AURAN1.170e-4474.00SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
B8C1V6_THAPS1.520e-4479.00SAM_MT_RSMB_NOP domain-containing protein (Fragmen... [more]
A0A7S2KX50_9STRA2.330e-4475.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78968contigEcto-sp13_S_contig78968:7..617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score187.6
Seed ortholog evalue2.8e-45
Seed eggNOG ortholog2880.D7G0G2
Model size303
KEGG koko:K14835
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0031974,GO:0031981,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360
Exons2
EggNOG free text desc.rRNA (cytosine-C5-)-methyltransferase activity
EggNOG OGsCOG0144@1,KOG1122@2759
EC2.1.1.310
Cds size288
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464060.527953-CDS-Ecto-sp13_S_contig78968:6..1801681464060.527953-CDS-Ecto-sp13_S_contig78968:6..180Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78968 7..180 -
1681464060.5513065-CDS-Ecto-sp13_S_contig78968:488..6021681464060.5513065-CDS-Ecto-sp13_S_contig78968:488..602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78968 489..602 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464060.569172-UTR-Ecto-sp13_S_contig78968:602..6171681464060.569172-UTR-Ecto-sp13_S_contig78968:602..617Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig78968 603..617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78968.19173.1prot_Ecto-sp13_S_contig78968.19173.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78968 7..602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78968.19173.1

>prot_Ecto-sp13_S_contig78968.19173.1 ID=prot_Ecto-sp13_S_contig78968.19173.1|Name=mRNA_Ecto-sp13_S_contig78968.19173.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
MKMFSPAECVEFLEASDKPRPLVIRANTLKTRRKDLAEALIKRGVSLEPV
AKWSKVGLKITESQIPIGATPEYLAGHYMLQSAASMCPVMALAPQQ
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mRNA from alignment at Ecto-sp13_S_contig78968:7..617-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78968.19173.1 ID=mRNA_Ecto-sp13_S_contig78968.19173.1|Name=mRNA_Ecto-sp13_S_contig78968.19173.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=611bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78968:7..617- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGTGCAAACGACAATGAAGATGTTCTCCCCAGCGGAGTGCGTCGAGTT
TCTCGAGGCGAGTGACAAGCCCCGGCCGCTCGTCATTCGCGCCAACACGC
TCAAGACCCGCCGAAAAGACTTGGCAGAAGTGAGTCAGTCGAGGAGATTG
CCGCGTGTCATCCATTGTTTGTGATTGCCCTCTGTTTCACCCGTCGCTCC
AACTCACGAAGTTTTTGTGCGCTTTGTGTTCAGCAGAATGTCCTTTGTTT
AAAGTTGCTTGTATCCGACGAGACGCTCAGCAGTCCAACTATTTTGCTTT
ACCGCTGACTTGACCTGGTACATATGCCGAAGTATGAAGAGTGTTCTGAT
CCACCTTGTTTCTGGGGGTTCATTTTCCGAGGCAACTCGAATCATCGTAT
CTTGTCCCCCTCTCGTTGTTTCCTCTCCGTAACCCAGGCGTTGATCAAGA
GGGGGGTCAGCCTCGAACCAGTGGCAAAGTGGTCCAAGGTCGGCCTCAAG
ATCACAGAGTCTCAGATTCCCATCGGTGCCACGCCGGAGTACCTCGCGGG
ACACTACATGCTGCAATCTGCTGCATCAATGTGTCCAGTGATGGCGCTCG
CCCCCCAGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78968:7..617-

>mRNA_Ecto-sp13_S_contig78968.19173.1 ID=mRNA_Ecto-sp13_S_contig78968.19173.1|Name=mRNA_Ecto-sp13_S_contig78968.19173.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78968:7..617- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGATGTTCTCCCCAGCGGAGTGCGTCGAGTTTCTCGAGGCGAGTGA
CAAGCCCCGGCCGCTCGTCATTCGCGCCAACACGCTCAAGACCCGCCGAA
AAGACTTGGCAGAAGCGTTGATCAAGAGGGGGGTCAGCCTCGAACCAGTG
GCAAAGTGGTCCAAGGTCGGCCTCAAGATCACAGAGTCTCAGATTCCCAT
CGGTGCCACGCCGGAGTACCTCGCGGGACACTACATGCTGCAATCTGCTG
CATCAATGTGTCCAGTGATGGCGCTCGCCCCCCAGCAG
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