prot_Ecto-sp13_S_contig78967.19172.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig78967.19172.1
Unique Nameprot_Ecto-sp13_S_contig78967.19172.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length45
Homology
BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Match: B8C3F5_THAPS (Dna-directed RNA polymerase i (Fragment) n=2 Tax=Bacillariophyta TaxID=2836 RepID=B8C3F5_THAPS)

HSP 1 Score: 87.8 bits (216), Expect = 8.160e-22
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWA 45
            MNAPVMVD+E ETDPLKIA KELRERKIPI IRRYLPDGSHEDW 
Sbjct:   25 MNAPVMVDLEGETDPLKIAQKELRERKIPIVIRRYLPDGSHEDWG 69          
BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Match: A0A835ZH45_9STRA (DNA-directed RNA polymerases I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH45_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.840e-21
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWA 45
            MNAP+MVD+EN TDPLKIA KELRERKIPIKIRRYLPDGS+EDWA
Sbjct:   84 MNAPIMVDLENMTDPLKIAEKELRERKIPIKIRRYLPDGSYEDWA 128          
BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Match: A0A7R9ZBL4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBL4_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.690e-21
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWA 45
            MNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDW+
Sbjct:  108 MNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWS 152          
BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Match: A0A7S2E4M0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E4M0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 7.570e-21
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDW 44
            MNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDW
Sbjct:  109 MNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDW 152          
BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Match: K3WS78_GLOUD (Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WS78_GLOUD)

HSP 1 Score: 87.0 bits (214), Expect = 7.670e-21
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWA 45
            MNAPVMVDIE ETDPLKIAMKELRERKIPI IRRYLPDGS EDW+
Sbjct:   82 MNAPVMVDIEGETDPLKIAMKELRERKIPIIIRRYLPDGSFEDWS 126          
BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Match: A0A8K1FM68_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FM68_PYTOL)

HSP 1 Score: 87.0 bits (214), Expect = 7.670e-21
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWA 45
            MNAPVMVDIE ETDPLKIAMKELRERKIPI IRRYLPDGS EDW+
Sbjct:   82 MNAPVMVDIEGETDPLKIAMKELRERKIPIIIRRYLPDGSFEDWS 126          
BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Match: A0A6U0JRN7_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JRN7_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 9.150e-21
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWA 45
            MNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDW+
Sbjct:  147 MNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWS 191          
BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Match: A0A061S5F8_9CHLO (DNA-directed RNA Polymerase II subunit F n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S5F8_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 1.500e-20
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWA 45
            MNAPVMVDIE+ETDPL+IAMKELRE+KIP  IRRYLPDGS+EDWA
Sbjct:   78 MNAPVMVDIEDETDPLEIAMKELREKKIPFTIRRYLPDGSYEDWA 122          
BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Match: A0A024TCI1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TCI1_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.020e-20
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWA 45
            MNAPVMVDIE ETDPLKIAMKEL ERKIPI IRRYLPDGS+EDW+
Sbjct:   79 MNAPVMVDIEGETDPLKIAMKELAERKIPIIIRRYLPDGSYEDWS 123          
BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Match: A0A1Z5JVB2_FISSO (DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVB2_FISSO)

HSP 1 Score: 86.3 bits (212), Expect = 2.040e-20
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWA 45
            MNAPVMVD++ ETDPLKIA KELRERKIPI IRRY+PDGSHEDWA
Sbjct:   93 MNAPVMVDLDGETDPLKIAEKELRERKIPIIIRRYMPDGSHEDWA 137          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B8C3F5_THAPS8.160e-2288.89Dna-directed RNA polymerase i (Fragment) n=2 Tax=B... [more]
A0A835ZH45_9STRA2.840e-2188.89DNA-directed RNA polymerases I n=1 Tax=Tribonema m... [more]
A0A7R9ZBL4_9STRA3.690e-2188.89Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2E4M0_9STRA7.570e-2190.91Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
K3WS78_GLOUD7.670e-2191.11Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4... [more]
A0A8K1FM68_PYTOL7.670e-2191.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6U0JRN7_9STRA9.150e-2188.89Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A061S5F8_9CHLO1.500e-2086.67DNA-directed RNA Polymerase II subunit F n=1 Tax=T... [more]
A0A024TCI1_9STRA2.020e-2088.89Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A1Z5JVB2_FISSO2.040e-2086.67DNA-directed RNA polymerases I, II, and III subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006111Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunitPIRSFPIRSF000778RpoK/RPB6coord: 1..45
e-value: 7.3E-22
score: 75.9
IPR012293RNA polymerase subunit, RPB6/omegaGENE3D3.90.940.10coord: 1..45
e-value: 2.3E-21
score: 78.0
NoneNo IPR availablePANTHERPTHR47227FAMILY NOT NAMEDcoord: 1..44
IPR036161RPB6/omega subunit-like superfamilySUPERFAMILY63562RPB6/omega subunit-likecoord: 1..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78967contigEcto-sp13_S_contig78967:488..622 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78967.19172.1mRNA_Ecto-sp13_S_contig78967.19172.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig78967 482..622 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig78967.19172.1 ID=prot_Ecto-sp13_S_contig78967.19172.1|Name=mRNA_Ecto-sp13_S_contig78967.19172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006111RpoK/Rpb6
IPR012293RNAP_RPB6_omega
IPR036161RPB6/omega-like_sf