mRNA_Ecto-sp13_S_contig78967.19172.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78967.19172.1
Unique NamemRNA_Ecto-sp13_S_contig78967.19172.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Match: B8C3F5_THAPS (Dna-directed RNA polymerase i (Fragment) n=2 Tax=Bacillariophyta TaxID=2836 RepID=B8C3F5_THAPS)

HSP 1 Score: 89.7 bits (221), Expect = 1.540e-22
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 FSMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWA 141
             SMNAPVMVD+E ETDPLKIA KELRERKIPI IRRYLPDGSHEDW 
Sbjct:   23 ISMNAPVMVDLEGETDPLKIAQKELRERKIPIVIRRYLPDGSHEDWG 69
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BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Match: A0A835ZH45_9STRA (DNA-directed RNA polymerases I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH45_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 5.400e-22
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 FSMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWA 141
             SMNAP+MVD+EN TDPLKIA KELRERKIPIKIRRYLPDGS+EDWA
Sbjct:   82 ISMNAPIMVDLENMTDPLKIAEKELRERKIPIKIRRYLPDGSYEDWA 128
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BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Match: A0A7R9ZBL4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBL4_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 7.070e-22
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 FSMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWA 141
             SMNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDW+
Sbjct:  106 ISMNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWS 152
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BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Match: A0A7S2E4M0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E4M0_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.450e-21
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 FSMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDW 138
             SMNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDW
Sbjct:  107 ISMNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDW 152
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BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Match: K3WS78_GLOUD (Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WS78_GLOUD)

HSP 1 Score: 89.0 bits (219), Expect = 1.460e-21
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 FSMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWA 141
             SMNAPVMVDIE ETDPLKIAMKELRERKIPI IRRYLPDGS EDW+
Sbjct:   80 ISMNAPVMVDIEGETDPLKIAMKELRERKIPIIIRRYLPDGSFEDWS 126
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BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Match: A0A8K1FM68_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FM68_PYTOL)

HSP 1 Score: 89.0 bits (219), Expect = 1.460e-21
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 FSMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWA 141
             SMNAPVMVDIE ETDPLKIAMKELRERKIPI IRRYLPDGS EDW+
Sbjct:   80 ISMNAPVMVDIEGETDPLKIAMKELRERKIPIIIRRYLPDGSFEDWS 126
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Match: A0A6U0JRN7_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JRN7_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.780e-21
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 FSMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWA 141
             SMNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDW+
Sbjct:  145 ISMNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWS 191
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Match: A0A061S5F8_9CHLO (DNA-directed RNA Polymerase II subunit F n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S5F8_9CHLO)

HSP 1 Score: 88.2 bits (217), Expect = 2.860e-21
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 FSMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWA 141
             SMNAPVMVDIE+ETDPL+IAMKELRE+KIP  IRRYLPDGS+EDWA
Sbjct:   76 ISMNAPVMVDIEDETDPLEIAMKELREKKIPFTIRRYLPDGSYEDWA 122
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BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Match: A0A024TCI1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TCI1_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.850e-21
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 FSMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWA 141
             SMNAPVMVDIE ETDPLKIAMKEL ERKIPI IRRYLPDGS+EDW+
Sbjct:   77 ISMNAPVMVDIEGETDPLKIAMKELAERKIPIIIRRYLPDGSYEDWS 123
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Match: A0A1Z5JVB2_FISSO (DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVB2_FISSO)

HSP 1 Score: 88.2 bits (217), Expect = 3.900e-21
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 FSMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWA 141
             SMNAPVMVD++ ETDPLKIA KELRERKIPI IRRY+PDGSHEDWA
Sbjct:   91 ISMNAPVMVDLDGETDPLKIAEKELRERKIPIIIRRYMPDGSHEDWA 137
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78967.19172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B8C3F5_THAPS1.540e-2287.23Dna-directed RNA polymerase i (Fragment) n=2 Tax=B... [more]
A0A835ZH45_9STRA5.400e-2287.23DNA-directed RNA polymerases I n=1 Tax=Tribonema m... [more]
A0A7R9ZBL4_9STRA7.070e-2287.23Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2E4M0_9STRA1.450e-2189.13Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
K3WS78_GLOUD1.460e-2189.36Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4... [more]
A0A8K1FM68_PYTOL1.460e-2189.36Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6U0JRN7_9STRA1.780e-2187.23Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A061S5F8_9CHLO2.860e-2185.11DNA-directed RNA Polymerase II subunit F n=1 Tax=T... [more]
A0A024TCI1_9STRA3.850e-2187.23Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A1Z5JVB2_FISSO3.900e-2185.11DNA-directed RNA polymerases I, II, and III subuni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78967contigEcto-sp13_S_contig78967:482..622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score87.8
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog35128.Thaps262598
Preferred namepolr2f
Model size141
KEGG rclassRC02795
KEGG koko:K00960,ko:K03014
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0000418,GO:0000419,GO:0000428,GO:0001650,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006383,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0023052,GO:0030880,GO:0031974,GO:0031981,GO:0032502,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0040029,GO:0042221,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons1
EggNOG free text desc.RNA polymerase Rpb6
EggNOG OGs2XDIN@2836,COG1758@1,KOG3405@2759
EC2.7.7.6
Cds size135
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464060.480036-UTR-Ecto-sp13_S_contig78967:481..4871681464060.480036-UTR-Ecto-sp13_S_contig78967:481..487Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig78967 482..487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464060.4944098-CDS-Ecto-sp13_S_contig78967:487..6221681464060.4944098-CDS-Ecto-sp13_S_contig78967:487..622Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78967 488..622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78967.19172.1prot_Ecto-sp13_S_contig78967.19172.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78967 488..622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78967.19172.1

>prot_Ecto-sp13_S_contig78967.19172.1 ID=prot_Ecto-sp13_S_contig78967.19172.1|Name=mRNA_Ecto-sp13_S_contig78967.19172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWA
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mRNA from alignment at Ecto-sp13_S_contig78967:482..622+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78967.19172.1 ID=mRNA_Ecto-sp13_S_contig78967.19172.1|Name=mRNA_Ecto-sp13_S_contig78967.19172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78967:482..622+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCAGTATGAACGCGCCGGTGATGGTCGACATCGAGAACGAGACTGACCC
CTTGAAGATCGCCATGAAGGAGTTGAGGGAGAGGAAAATCCCGATTAAAA
TCCGGCGGTATCTGCCGGACGGGAGCCACGAGGATTGGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78967:482..622+

>mRNA_Ecto-sp13_S_contig78967.19172.1 ID=mRNA_Ecto-sp13_S_contig78967.19172.1|Name=mRNA_Ecto-sp13_S_contig78967.19172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78967:482..622+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGCGCCGGTGATGGTCGACATCGAGAACGAGACTGACCCCTTGAA
GATCGCCATGAAGGAGTTGAGGGAGAGGAAAATCCCGATTAAAATCCGGC
GGTATCTGCCGGACGGGAGCCACGAGGATTGGGCG
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