mRNA_Ecto-sp13_S_contig7896.19171.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7896.19171.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI) HSP 1 Score: 412 bits (1060), Expect = 6.280e-133 Identity = 194/205 (94.63%), Postives = 196/205 (95.61%), Query Frame = 1
Query: 1 VEEEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLAGGNAGEIGSRMENSCRTWLSGWVRNGMQPVRLEPHVCLTSCFRARVGEHGERSAGNHVWKGGWVCDWRNVEDDQPSPSFLHRLVNKPDGRGLRGAQMVLPRSWDIALTVLEALEHGRDPVEVVFRKSPEPDRGDVTETAGGKAVVYQGITVEELGTKWQETVDEL 615
VE+EDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDL GGNAGEIGSRMENSCRTWLSGWVRNGMQPVRLEPHVCLTSCF RVGEHGERSAGNHVWKGGW CDWRNVEDDQPSPSFLHRLVNKPDGRGLRGAQMVLPRSWD+AL VLEALEHGRDPVEVV RKSPEPDRGD TET GGKA VYQGITVEELGTKWQETVDEL
Sbjct: 504 VEQEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLVGGNAGEIGSRMENSCRTWLSGWVRNGMQPVRLEPHVCLTSCFPIRVGEHGERSAGNHVWKGGWACDWRNVEDDQPSPSFLHRLVNKPDGRGLRGAQMVLPRSWDVALAVLEALEHGRDPVEVVLRKSPEPDRGDETET-GGKADVYQGITVEELGTKWQETVDEL 707
BLAST of mRNA_Ecto-sp13_S_contig7896.19171.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE) HSP 1 Score: 358 bits (918), Expect = 9.270e-115 Identity = 174/222 (78.38%), Postives = 179/222 (80.63%), Query Frame = 1
Query: 7 EEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLAGGNAGEIGSRMENSCRTWLSGWVRN-------------------GMQPVRLEPHVCLTSCFRARVGEHGERSAGNHVWKGGWVCDWRNVEDDQPSPSFLHRLVNKPDGRGLRGAQMVLPRSWDIALTVLEALEHGRDPVEVVFRKSPEPDRGDVTETAGGKAVVYQGITVEELGTKWQETVDEL 615
E DCRKLEELRVCDWLRSISRR+PDNDVILVATKCDLAGGNA EIGSRME +CRTWLSGWVRN GMQPVRLEPHVCLTS RV EHG+RSAGNH KGGW CDWR+ EDDQP PSFLHRLVNKPDGRGLRG Q VLPRSWDIALTVLEALEHGRDPVE V KSP+PD D ETAGGK VYQGITVEELGTKWQETVDEL
Sbjct: 107 EGDCRKLEELRVCDWLRSISRRIPDNDVILVATKCDLAGGNAREIGSRMEKACRTWLSGWVRNAXXXXXXXXXXXXXXXXXXGMQPVRLEPHVCLTSSLPVRVDEHGDRSAGNHGSKGGWACDWRDEEDDQPPPSFLHRLVNKPDGRGLRGTQTVLPRSWDIALTVLEALEHGRDPVEAVLGKSPDPDGEDAAETAGGKTDVYQGITVEELGTKWQETVDEL 328
BLAST of mRNA_Ecto-sp13_S_contig7896.19171.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE) HSP 1 Score: 354 bits (908), Expect = 3.990e-113 Identity = 164/202 (81.19%), Postives = 177/202 (87.62%), Query Frame = 1
Query: 10 EDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLAGGNAGEIGSRMENSCRTWLSGWVRNGMQPVRLEPHVCLTSCFRARVGEHGERSAGNHVWKGGWVCDWRNVEDDQPSPSFLHRLVNKPDGRGLRGAQMVLPRSWDIALTVLEALEHGRDPVEVVFRKSPEPDRGDVTETAGGKAVVYQGITVEELGTKWQETVDEL 615
EDCRKLEELRVCDWLRSISRRVP+NDVILVATKCDLAGGNAG+IG+RME++CR WLS WVRNG+QPVRLEP V LTSCF VGEHGE S G+H KGGW CDWR++ D PSPS LHRLVNKPDGRGLRG QMVLPRSWDIALTVLEALEHGRDPVEVV RKSP+PDRGD TETA G+ +YQGITVE+L KWQETVD L
Sbjct: 292 EDCRKLEELRVCDWLRSISRRVPNNDVILVATKCDLAGGNAGKIGARMEHACRRWLSSWVRNGLQPVRLEPCVSLTSCFETGVGEHGESSTGSHELKGGWACDWRDMADGNPSPSLLHRLVNKPDGRGLRGTQMVLPRSWDIALTVLEALEHGRDPVEVVLRKSPDPDRGDATETARGETAMYQGITVEDLSIKWQETVDGL 493
BLAST of mRNA_Ecto-sp13_S_contig7896.19171.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI) HSP 1 Score: 327 bits (838), Expect = 3.980e-102 Identity = 153/203 (75.37%), Postives = 166/203 (81.77%), Query Frame = 1
Query: 7 EEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLAGGNAGEIGSRMENSCRTWLSGWVRNGMQPVRLEPHVCLTSCFRARVGEHGERSAGNHVWKGGWVCDWRNVEDDQPSPSFLHRLVNKPDGRGLRGAQMVLPRSWDIALTVLEALEHGRDPVEVVFRKSPEPDRGDVTETAGGKAVVYQGITVEELGTKWQETVDEL 615
EEDCRKLEELRVCDWLRSISRRVP NDVILV TKCDLAGGNA EIG R+E++CRTWLS WVR+GMQPV+LEP V TSCF A G+HGE NH KG W CDW +++DD P PS LHRLVNKPDG GLRGAQMVLPRSWD L VL++LE GRDPVEVV RKS PDRGD TETAGG VVYQGITVE+L KWQ+ VDEL
Sbjct: 241 EEDCRKLEELRVCDWLRSISRRVPHNDVILVVTKCDLAGGNAAEIGERVEHACRTWLSSWVRHGMQPVQLEPGVSFTSCFPAEGGQHGEVGTENHGSKGDWACDWHDMKDDHPPPSLLHRLVNKPDGGGLRGAQMVLPRSWDTVLIVLDSLEQGRDPVEVVLRKSLHPDRGDATETAGGNTVVYQGITVEDLSKKWQKIVDEL 443
BLAST of mRNA_Ecto-sp13_S_contig7896.19171.1 vs. uniprot
Match: A0A6H5KJL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL6_9PHAE) HSP 1 Score: 295 bits (755), Expect = 1.190e-97 Identity = 135/154 (87.66%), Postives = 140/154 (90.91%), Query Frame = 1
Query: 7 EEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLAGGNAGEIGSRMENSCRTWLSGWVRNGMQPVRLEPHVCLTSCFRARVGEHGERSAGNHVWKGGWVCDWRNVEDDQPSPSFLHRLVNKPDGRGLRGAQMVLPRSWDIALTVLEALEHG 468
EEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLAGGNA EIGSRME +CRTWLSGWVRNGMQPVRLEPHVCLTSCF RV + G+R+AGNH KGGW CDWR+ EDDQP P FLHRLVNKPDGRGLRG QMVLPRSWDIALT LEALEHG
Sbjct: 166 EEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLAGGNAREIGSRMEKTCRTWLSGWVRNGMQPVRLEPHVCLTSCFPVRVDKQGDRNAGNHGSKGGWACDWRDEEDDQPPPGFLHRLVNKPDGRGLRGTQMVLPRSWDIALTFLEALEHG 319
BLAST of mRNA_Ecto-sp13_S_contig7896.19171.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI) HSP 1 Score: 307 bits (787), Expect = 4.030e-95 Identity = 149/203 (73.40%), Postives = 162/203 (79.80%), Query Frame = 1
Query: 7 EEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLAGGNAGEIGSRMENSCRTWLSGWVRNGMQPVRLEPHVCLTSCFRARVGEHGERSAGNHVWKGGWVCDWRNVEDDQPSPSFLHRLVNKPDGRGLRGAQMVLPRSWDIALTVLEALEHGRDPVEVVFRKSPEPDRGDVTETAGGKAVVYQGITVEELGTKWQETVDEL 615
EEDCRKL+ LRVCDWLRSISRRVP NDVILVATKCDL GNA E G R+E++CR WLS WVRNGM PVRLEPHV LTSCF GEHGE + G+ K GW CDWR+VE D+ SPS L+RLVNKPD GLRG QMVLPRSWDIALTVLEALEHGRDPVE+V KSP+ +R TET GK VYQ I VEELGT W+ETVDEL
Sbjct: 222 EEDCRKLQALRVCDWLRSISRRVPGNDVILVATKCDLVSGNAEETGRRLEHACRMWLSTWVRNGMDPVRLEPHVSLTSCFPIGDGEHGESNTGSDASKQGWACDWRHVEGDKSSPSLLYRLVNKPDEGGLRGVQMVLPRSWDIALTVLEALEHGRDPVEMVLLKSPDSERRP-TETGVGKTNVYQAIKVEELGTNWRETVDEL 423
BLAST of mRNA_Ecto-sp13_S_contig7896.19171.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE) HSP 1 Score: 300 bits (768), Expect = 2.330e-94 Identity = 144/203 (70.94%), Postives = 156/203 (76.85%), Query Frame = 1
Query: 7 EEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLAGGNAGEIGSRMENSCRTWLSGWVRNGMQPVRLEPHVCLTSCFRARVGEHGERSAGNHVWKGGWVCDWRNVEDDQPSPSFLHRLVNKPDGRGLRGAQMVLPRSWDIALTVLEALEHGRDPVEVVFRKSPEPDRGDVTETAGGKAVVYQGITVEELGTKWQETVDEL 615
EEDCRKLE LRVCDWLRSIS RVP NDVILVATKCDL GN E G R+E++CRTWLS WVRNGM VRLE HV LTSCF EHGE GNH K GW CDWR+VE D SPS L+RLVNKPD GLRG QMVLPRSWD+ALT L++LE+GR PVE+V KSP+ D G TETAGG VYQGITVEEL +WQ TVDEL
Sbjct: 271 EEDCRKLEGLRVCDWLRSISCRVPGNDVILVATKCDLVNGNVEETGQRIEHACRTWLSSWVRNGMDSVRLERHVSLTSCFPIGASEHGESRRGNHALKQGWACDWRDVEGDMSSPSLLYRLVNKPDQGGLRGVQMVLPRSWDVALTFLDSLEYGRHPVEMVMLKSPDSDSG-ATETAGGTTTVYQGITVEELSARWQGTVDEL 472
BLAST of mRNA_Ecto-sp13_S_contig7896.19171.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI) HSP 1 Score: 303 bits (776), Expect = 5.770e-93 Identity = 142/199 (71.36%), Postives = 157/199 (78.89%), Query Frame = 1
Query: 10 EDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLAGGNAGEIGSRMENSCRTWLSGWVRNGMQPVRLEPHVCLTSCFRARVGEHGERSAGNHVWKGGWVCDWRNVEDDQPSPSFLHRLVNKPDGRGLRGAQMVLPRSWDIALTVLEALEHGRDPVEVVFRKSPEPDRGDVTETAGGKAVVYQGITVEELGTKWQETV 606
EDCRKLEELRVCDWLRS+SRRVP+NDVILVATKCDL GGNA E G R+E + RTWL+ WV +GMQPVRLEP VCLTSC + VGE+GE+S G++ + GW CDWR+ DD P P +HRLVNKPDG GLRG QMVLPRSWDIALTVLEALE GRDPVEVV EPDR D T TA + VYQGITVE L KWQE V
Sbjct: 336 EDCRKLEELRVCDWLRSVSRRVPNNDVILVATKCDLVGGNAEEFGRRIEQATRTWLASWVHDGMQPVRLEPGVCLTSCCASAVGENGEKSTGHNASERGWACDWRDDRDDMPPPGLVHRLVNKPDGSGLRGTQMVLPRSWDIALTVLEALERGRDPVEVVVEHLAEPDREDATRTAARQTGVYQGITVEALRVKWQEAV 534
BLAST of mRNA_Ecto-sp13_S_contig7896.19171.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI) HSP 1 Score: 303 bits (776), Expect = 1.550e-92 Identity = 144/197 (73.10%), Postives = 156/197 (79.19%), Query Frame = 1
Query: 10 EDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLAGGNAGEIGSRMENSCRTWLSGWVRNGMQPVRLEPHVCLTSCFRARVGEHGERSAGNHVWKGGWVCDWRNVEDDQPSPSFLHRLVNKPDGRGLRGAQMVLPRSWDIALTVLEALEHGRDPVEVVFRKSPEPDRGDVTETAGGKAVVYQGITVEELGTKWQE 600
EDCRKLEELRVCDWLRSISRRVPDNDVILVATKCD GGNAGEIG R+E + R WL+ WVR+GMQPVRLEP VCLTSC V E GERS N +GGW CDWR+ +DD PSPS LHRLVNKPDG GLRGAQMV+PRSWDIALTVLEALE GRDPVE+V + D GD T TA K +Y GIT E+L TKWQE
Sbjct: 436 EDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDSVGGNAGEIGKRIELASRMWLASWVRSGMQPVRLEPGVCLTSCCTTNVCEDGERSTRNQAMEGGWTCDWRDGKDDNPSPSLLHRLVNKPDGGGLRGAQMVIPRSWDIALTVLEALERGRDPVEMVVEDLGDADGGDATGTAACKTGLYHGITAEDLRTKWQE 632
BLAST of mRNA_Ecto-sp13_S_contig7896.19171.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI) HSP 1 Score: 301 bits (770), Expect = 1.170e-91 Identity = 144/202 (71.29%), Postives = 153/202 (75.74%), Query Frame = 1
Query: 10 EDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLAGGNAGEIGSRMENSCRTWLSGWVRNGMQPVRLEPHVCLTSCFRARVGEHGERSAGNHVWKGGWVCDWRNVEDDQPSPSFLHRLVNKPDGRGLRGAQMVLPRSWDIALTVLEALEHGRDPVEVVFRKSPEPDRGDVTETAGGKAVVYQGITVEELGTKWQETVDEL 615
EDCRKLEELRVC+WLRSI+RRVPDND ILVATKCDL GGNA E+G RME +CR WL+ WVRNGMQPVRLE V LTSC R GEHGER NH +GGWVCDWR D +P LHRLVNKPDG GLRG Q+VLPRSWDIALTVLEALE GRDPVEVV K RGD E A YQGITVE+L KW ETVDEL
Sbjct: 364 EDCRKLEELRVCEWLRSIARRVPDNDAILVATKCDLVGGNAAEVGRRMEQACRMWLASWVRNGMQPVRLEHGVGLTSCRPTRFGEHGERGTANHTVEGGWVCDWRGHIGDDSAPGLLHRLVNKPDGGGLRGTQLVLPRSWDIALTVLEALESGRDPVEVVMHKLGNVGRGDAAEMTAANAGGYQGITVEDLIAKWLETVDEL 565 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7896.19171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7896.19171.1 >prot_Ecto-sp13_S_contig7896.19171.1 ID=prot_Ecto-sp13_S_contig7896.19171.1|Name=mRNA_Ecto-sp13_S_contig7896.19171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=205bp VEEEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLAGGNAGEIGSRback to top mRNA from alignment at Ecto-sp13_S_contig7896:726..2441+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7896.19171.1 ID=mRNA_Ecto-sp13_S_contig7896.19171.1|Name=mRNA_Ecto-sp13_S_contig7896.19171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1716bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7896:726..2441+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7896:726..2441+ >mRNA_Ecto-sp13_S_contig7896.19171.1 ID=mRNA_Ecto-sp13_S_contig7896.19171.1|Name=mRNA_Ecto-sp13_S_contig7896.19171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7896:726..2441+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |