mRNA_Ecto-sp13_S_contig7895.19170.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7895.19170.1
Unique NamemRNA_Ecto-sp13_S_contig7895.19170.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7895.19170.1 vs. uniprot
Match: D7FI88_ECTSI (Similar to Pappalysin-2 (Pregnancy-associated plasma protein-A2) (PAPP-A2) (Pregnancy-associated plasma protein-E1) (PAPP-E) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI88_ECTSI)

HSP 1 Score: 476 bits (1224), Expect = 1.570e-168
Identity = 233/272 (85.66%), Postives = 250/272 (91.91%), Query Frame = 1
Query:    1 MEFSCIDPNAACGDDDDITVDMLENCGNVRGIGNGRCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPSASCFGEGTTRSDDFTFDDDDETMSYEFVTWKETESLPMVIDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCAATNTRDGIFSDIESRWSCATSLVPDEGPCQIEFFFAEPQNIVDIQVAFWKGNERTRTLKVHVDGELTHTHEFYTDSTFSTLGVTAIEANTVMLESVALLSDEWISLVEVSV 816
            MEF+CIDP+A C DDDD+TVDM+ENCG V GIGNG CDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDP+ASCFGEGTT SDDF+F DD + MSYEF++W+ETESLP V+DAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGC ATNTRDGI SDIESRWSCATSLVPDEGPCQIEF FAEPQNIVDIQVAFW  NER  TL+VHV+GELTHTHE Y D TF+TLGVTA EA+TVMLESVALLSDEWISL+EV +
Sbjct:    1 MEFACIDPSAPCVDDDDVTVDMVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPTASCFGEGTTGSDDFSFHDDYQPMSYEFLSWEETESLPTVVDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLEVHVNGELTHTHESY-DDTFNTLGVTATEASTVMLESVALLSDEWISLLEVQI 271          
BLAST of mRNA_Ecto-sp13_S_contig7895.19170.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 474 bits (1221), Expect = 2.170e-161
Identity = 232/272 (85.29%), Postives = 250/272 (91.91%), Query Frame = 1
Query:    1 MEFSCIDPNAACGDDDDITVDMLENCGNVRGIGNGRCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPSASCFGEGTTRSDDFTFDDDDETMSYEFVTWKETESLPMVIDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCAATNTRDGIFSDIESRWSCATSLVPDEGPCQIEFFFAEPQNIVDIQVAFWKGNERTRTLKVHVDGELTHTHEFYTDSTFSTLGVTAIEANTVMLESVALLSDEWISLVEVSV 816
            MEFSCIDP+A C +DDD+T+DM+ENCG V GIGNG CDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPSASCFGEGTT SDDF+F DD + MSYEFV+W+ET+SLP V+DAVEVGTKTEVGVSATAHD+RPGSSG DVGCGEVGGLGC ATNTRDGIFSDIESRWSCATSLVPDEGPCQIEF FAEPQNIVDIQVAFW  NER  TL+VHV+GELTHTHE Y D TF+TLGVTA EA+TVMLESVALLSDEWISL+EV +
Sbjct:  462 MEFSCIDPSAPCVNDDDVTIDMVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPSASCFGEGTTGSDDFSFHDDYQPMSYEFVSWEETDSLPTVVDAVEVGTKTEVGVSATAHDLRPGSSGGDVGCGEVGGLGCTATNTRDGIFSDIESRWSCATSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLEVHVNGELTHTHESY-DDTFNTLGVTATEASTVMLESVALLSDEWISLLEVQI 732          
BLAST of mRNA_Ecto-sp13_S_contig7895.19170.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 444 bits (1142), Expect = 1.940e-152
Identity = 217/270 (80.37%), Postives = 239/270 (88.52%), Query Frame = 1
Query:    1 MEFSCIDPNAACGDDDDITVDMLENCGNVRGIGNGRCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPSASCFGEGTTRSDDFTFDDDDETMSYEFVTWKETESLPMVIDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCAATNTRDGIFSDIESRWSCATSLVPDEGPCQIEFFFAEPQNIVDIQVAFWKGNERTRTLKVHVDGELTHTHEFYTDSTFSTLGVTAIEANTVMLESVALLSDEWISLVEV 810
            MEF+CIDP+A C DDDDITVDM+ENCG V GIGNG CDRNNNKEECGYDGGDCCSCTC+S YDDDYSCSSEYG FDC+DP+ASCFGE  T SDDF+ DD  + MSYEFV W+ETE+LP V  AVEVGTKTEVGVS+TAHDVRPG S  D GCGEVGGLGC ATNTRDGIFS+IESRWSCAT LV DEGPCQIEF FAEPQ I+DIQVAFWKGNERTRTL+VH++GE+THTHE Y D+TF+TLGVTA + +TVMLESVALLSDEWISL+EV
Sbjct:  242 MEFACIDPSAPCVDDDDITVDMVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCESPYDDDYSCSSEYGSFDCKDPNASCFGEEPTGSDDFSTDD--QPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGMSSGDAGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVHINGEMTHTHESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEV 509          
BLAST of mRNA_Ecto-sp13_S_contig7895.19170.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 421 bits (1082), Expect = 1.040e-142
Identity = 220/319 (68.97%), Postives = 237/319 (74.29%), Query Frame = 1
Query:    4 EFSCIDPNAACGDDDDITVDMLENCGNVRGIGNGRCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPSASCFGEGTTRSDDFTFDDDDETMSYEFVTWKETESLPMVIDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCAATNTRDGIFSDIESRWSCATSLVPDEGPCQIEFFFAEPQNIVDIQVAFWKGNERTRTLKV-------------------------------------------------HVDGELTHTHEFYTDSTFSTLGVTAIEANTVMLESVALLSDEWISLVEVS 813
            EFSCIDPNAAC  DDDITVDM ENCG V GIGNG CDRNNNKEECGYDGGDCCSCTCQS YDDDY CSSEYG FDCQDP+ASCFGE +T SDD++ DD  E MSYEFV W+ETE+LP V  AVEVGTKTEVGVSATAHDVR G S  DVGCGEVGGLGC ATNTRDGIFS+IESRWSCAT LV DEGPCQIEF FAEPQ I+DIQVAFWKGNERTRTL+V                                                 H++GE+THTHE Y D+TF+ LGVTA + +TVMLESVALLSDEWISL+EVS
Sbjct:  143 EFSCIDPNAACVSDDDITVDMFENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYGSFDCQDPNASCFGEESTGSDDYSTDD--EPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSATAHDVRAGRSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVRATPSRLKTIEITSRLFWLLCCPRQHLRDCGARSKSFIFLTAQTFPTQVHINGEMTHTHESYADATFNMLGVTATDVSTVMLESVALLSDEWISLIEVS 459          
BLAST of mRNA_Ecto-sp13_S_contig7895.19170.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 411 bits (1056), Expect = 4.130e-138
Identity = 215/272 (79.04%), Postives = 229/272 (84.19%), Query Frame = 1
Query:    7 FSCIDPNAACGDDDDITVDMLENCGNVRGIGNG--RCDRNNNKEECGYDGGDCCSCTCQSAYD--DDYSCSSEYGYFDCQDPSASCFGEGTTRSDDFTFDDDDETMSYEFVTWKETESLPMVIDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCAATNTRDGIFSDIESRWSCATSLVPDEGPCQIEFFFAEPQNIVDIQVAFWKGNERTRTLKVHVDGELTHTHEFYTDSTFSTLGVTAIEANTVMLESVALLSDEWISLVEV 810
            F+CIDP AAC +DDDITVDM  NC     IGNG  R  R       GYDGGDCCSCTCQ+A+D  DDYSCSSEY   DC+DP+ASCFGEGTT SDDFTF DD +  SYEFV W+ETESLP VIDAVEVGTKTEVGVSATAHDVRP SS DDVGCG+VGGLGC ATNTRDGI SDIESRWSCAT LVPDEG CQIEF FAEPQN+VDIQVAFWKGNERTRTL VHV+GELTHTHE Y DSTF+TLGVTA EA+TVMLESVALLSDEWISL+EV
Sbjct:  334 FACIDPEAACVNDDDITVDMFVNCEYPVDIGNGWLRWRRLLRVHMRGYDGGDCCSCTCQNAWDWDDDYSCSSEYNSLDCKDPTASCFGEGTTGSDDFTFHDDYQPTSYEFVHWEETESLPTVIDAVEVGTKTEVGVSATAHDVRPRSSSDDVGCGQVGGLGCTATNTRDGIVSDIESRWSCATILVPDEGACQIEFSFAEPQNVVDIQVAFWKGNERTRTLWVHVNGELTHTHESYADSTFNTLGVTATEASTVMLESVALLSDEWISLLEV 605          
BLAST of mRNA_Ecto-sp13_S_contig7895.19170.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 416 bits (1070), Expect = 3.970e-137
Identity = 221/336 (65.77%), Postives = 238/336 (70.83%), Query Frame = 1
Query:    4 EFSCIDPNAACGDDDDITVDMLENCGNVRGIGNGRCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPSASCFGEGTTRSDDFTFDDDDETMSYEFVTWKETESLPMVIDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCAATNTRDGIFSDIESRWSCATSLVPDEGPCQIEFFFAEPQNIVDIQVAFWKGNERTRTLKV------------------------------------------------------------------HVDGELTHTHEFYTDSTFSTLGVTAIEANTVMLESVALLSDEWISLVEVS 813
            EFSCIDPNAAC  DDDITVDM ENCG V GIGNG CDRNNNKEECGYDGGDCCSCTCQS YDDDY CSSEYG FDCQDP+ASCFGE +T SDD++ DD  E MSYEFV W+ETE+LP V  AVEVGTKTEVGVSATAHDVR G S  DVGCGEVGGLGC ATNTRDGIFS+IESRWSCAT LV DEGPCQIEF FAEPQ I+DIQVAFWKGNERTRTL+V                                                                  H++GE+THTHE YTD+TF+ LGVTA + +TVMLESVALLSDEWISL+EVS
Sbjct:  505 EFSCIDPNAACVSDDDITVDMFENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYGSFDCQDPNASCFGEESTGSDDYSTDD--EPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSATAHDVRAGRSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVRATPSRLKTIEIQAVFFGHCVALDNTFATVRHREDGISTRLNAQHGGGARSKSFIFLTAQTFPTQVHINGEMTHTHESYTDATFNMLGVTATDVSTVMLESVALLSDEWISLIEVS 838          
BLAST of mRNA_Ecto-sp13_S_contig7895.19170.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 395 bits (1016), Expect = 2.210e-136
Identity = 199/272 (73.16%), Postives = 222/272 (81.62%), Query Frame = 1
Query:    1 MEFSCIDPNAACGDDDDITVDMLENCGNVRGIGNGRCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPSASCFGEGTT--RSDDFTFDDDDETMSYEFVTWKETESLPMVIDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCAATNTRDGIFSDIESRWSCATSLVPDEGPCQIEFFFAEPQNIVDIQVAFWKGNERTRTLKVHVDGELTHTHEFYTDSTFSTLGVTAIEANTVMLESVALLSDEWISLVEV 810
            M+FSCIDPNA C +DDDITVDM +NCG V GIG+G CD NNNKE CGYDGGDCCSCTC+S +DDDY+C  E  +FDC+DPSA+CFGE T     DD T    D    YEFV W++TE LP V DAVEVGTKTEV VSATAHDVR G S  +VGCGE GG GCAA N RDGI ++IESRWSCA  L+ DEGPCQIEF FAEPQNIVDIQVAFWKGNER RTL+V+V+GELTHTHE Y DSTF+TLGVTA EANTVMLESV+LLS+EWISL+EV
Sbjct:   30 MQFSCIDPNAPCVNDDDITVDMFDNCGYVSGIGDGWCDSNNNKEACGYDGGDCCSCTCESVWDDDYTCG-EDAFFDCKDPSAACFGEETAMGNGDDSTGRSSDPDTEYEFVPWEQTEPLPTVDDAVEVGTKTEVSVSATAHDVRAGRSSGEVGCGEAGGNGCAANNARDGISTEIESRWSCAAKLLDDEGPCQIEFSFAEPQNIVDIQVAFWKGNERVRTLEVYVNGELTHTHESYADSTFNTLGVTANEANTVMLESVSLLSNEWISLIEV 300          
BLAST of mRNA_Ecto-sp13_S_contig7895.19170.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 402 bits (1033), Expect = 2.680e-136
Identity = 198/268 (73.88%), Postives = 228/268 (85.07%), Query Frame = 1
Query:    7 FSCIDPNAACGDDDDITVDMLENCGNVRGIGNGRCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPSASCFGEGTTRSDDFTFDDDDETMSYEFVTWKETESLPMVIDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCAATNTRDGIFSDIESRWSCATSLVPDEGPCQIEFFFAEPQNIVDIQVAFWKGNERTRTLKVHVDGELTHTHEFYTDSTFSTLGVTAIEANTVMLESVALLSDEWISLVEV 810
            F+CIDP A C DDD +TVDM++NC  +R +GNG CD  NN E C YDGGDCC CTC+SA++DDY+CSSE+G F+C+DP+ASCFGE TT SDDF+ DD  + MSYEFV W+ETE+LP V  AVEVGTKTEVGVS+TAHDVRPG    D GCGEVGGLGC A NTRDGIFS+IESRWSCAT LV DEGPCQIEF FAEPQ IVDIQVAFWKGNERTRTL+V+++GE+THTHE Y D+TF+TLGVTA + +TVMLESVALLSDEWISL+EV
Sbjct:  221 FACIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGTFNCKDPNASCFGEETTGSDDFSTDD--QPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEV 482          
BLAST of mRNA_Ecto-sp13_S_contig7895.19170.1 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI)

HSP 1 Score: 348 bits (893), Expect = 1.010e-118
Identity = 173/228 (75.88%), Postives = 198/228 (86.84%), Query Frame = 1
Query:  127 KEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPSASCFGEGTTRSDDFTFDDDDETMSYEFVTWKETESLPMVIDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCAATNTRDGIFSDIESRWSCATSLVPDEGPCQIEFFFAEPQNIVDIQVAFWKGNERTRTLKVHVDGELTHTHEFYTDSTFSTLGVTAIEANTVMLESVALLSDEWISLVEV 810
            K +  YDGGDCC CTC+SA++DDY+CSSE+G F+C+DP+ASCFGE TT SDDF+ DD  + MSYEFV W+ETE+LP V  AVEVGTKTEVGVS+TAHDVRPG    D GCGEVGGLGC A NTRDGIFS+IESRWSCAT LV DEGPCQIEF FAEPQ IVDIQVAFWKGNERTRTL+V+++GE+THTHE Y D+TF+TLGVTA + +TVMLESVALLSDEWISL+EV
Sbjct:   10 KTKLSYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDD--QPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEV 231          
BLAST of mRNA_Ecto-sp13_S_contig7895.19170.1 vs. uniprot
Match: D7FL19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL19_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 2.540e-101
Identity = 149/200 (74.50%), Postives = 168/200 (84.00%), Query Frame = 1
Query:   64 MLENCGNVRGIGNGRCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPSASCFGEGTTRSDDFTFDDDDETMSYEFVTWKETESLPMVIDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCAATNTRDGIFSDIESRWSCATSLVPDEGPCQIEFFFAEPQNIVDIQVAFWKGNERTRTLKV 663
            M++NC  +R +GNG CD  NN E C YDGGDCC CTC+SA++DDY+CSSE+G F+C+DP+ASCFGE TT SDDF+ DD  + MSYEFV W+ETE+LP V  AVEVGTKTEVGVS+TAHDVRPG    D GCGEVGGLGC A NTRDGIFS+IESRWSCAT LV DEGPCQIEF FAEPQ IVDIQVAFWKGNERTRTL+V
Sbjct:    1 MIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDD--QPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEV 194          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7895.19170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI88_ECTSI1.570e-16885.66Similar to Pappalysin-2 (Pregnancy-associated plas... [more]
A0A6H5JM92_9PHAE2.170e-16185.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3F4_ECTSI1.940e-15280.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB04_9PHAE1.040e-14268.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI87_ECTSI4.130e-13879.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXR2_9PHAE3.970e-13765.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0S3_ECTSI2.210e-13673.16LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4F9_ECTSI2.680e-13673.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5F4_ECTSI1.010e-11875.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FL19_ECTSI2.540e-10174.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7895contigEcto-sp13_S_contig7895:2754..4907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size816
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionNotch domain
Ec32 orthologEc-00_002480.2
Cds size474
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464060.3469317-UTR-Ecto-sp13_S_contig7895:2753..29091681464060.3469317-UTR-Ecto-sp13_S_contig7895:2753..2909Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7895 2754..2909 -
1681464060.3593576-UTR-Ecto-sp13_S_contig7895:3167..31691681464060.3593576-UTR-Ecto-sp13_S_contig7895:3167..3169Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7895 3168..3169 -
1681464060.3811471-UTR-Ecto-sp13_S_contig7895:3643..36881681464060.3811471-UTR-Ecto-sp13_S_contig7895:3643..3688Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7895 3644..3688 -
1681464060.3911088-UTR-Ecto-sp13_S_contig7895:4768..49071681464060.3911088-UTR-Ecto-sp13_S_contig7895:4768..4907Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7895 4769..4907 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464060.369868-CDS-Ecto-sp13_S_contig7895:3169..36431681464060.369868-CDS-Ecto-sp13_S_contig7895:3169..3643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7895 3170..3643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7895.19170.1prot_Ecto-sp13_S_contig7895.19170.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7895 3170..3643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7895.19170.1

>prot_Ecto-sp13_S_contig7895.19170.1 ID=prot_Ecto-sp13_S_contig7895.19170.1|Name=mRNA_Ecto-sp13_S_contig7895.19170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp
MMTTTLAAASTATSTAKTLAPPASAKEQRGAMTSPSTTTTRQCRTNSSPG
KRRSPCRWSSTPSRWAPRPRLAYRPPPMMCGPAAAATTSGAERSVVLAAR
LPTPVMASSPTSSRGGRAPRALCLTKAPARSSSFSPNRRTSWTSRSPSGR
AMSAPVP*
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mRNA from alignment at Ecto-sp13_S_contig7895:2754..4907-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7895.19170.1 ID=mRNA_Ecto-sp13_S_contig7895.19170.1|Name=mRNA_Ecto-sp13_S_contig7895.19170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2154bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7895:2754..4907- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTTTTCTTGCATCGACCCCAACGCGGCCTGTGGAGACGATGACGA CATTACTGTCGACATGCTTGAGAACTGTGGCAACGTCCGCGGGATAGGTA ACGGCAGATGCGACAGAAACAACAACAAGGAGGAATGCGGTGAGTCAATG TACCCCTTGAGGTCATGCCTCATGAAAAGGTACAGAATGCCGGTCCCGTA CATCTGGGTGATGAGACGTGCACCTGCCGGGAAGGCTGGGTGTTGCCGCT AGAGTCTACTATCGGGGTGGTTTGTAATTCAGGCTGAACGAGCAGACATA GGCTCGTCGGGTGTGCCTCGTCTCCTTGAGCCTACTCGGCTTGAAAATGC GAAGAAATGCCGGCTCAATGAACGATCGGTGATGAGAAACGGCGTCAGAG CCGCGCTCTCCTTCGATAAAGTGCATCTTTGACACGTCGCACCGTGCAGT TCCCATTTTTTTTTCTGCCATATTTTGTGAGCCCTAAGCGATACCCGAAC CTAGCGAAGCTCGCTGTACCCGTTGGTCTTTGTCGGGTTGTAGCGGTACA TAGTGTTTCGCTCGACTTCGACGACTTGAGCACCACCTGGGATGTTTGCA GACACATGACCAACCCGCTGTGTGCTAGGCGTCTGTGAGCAAGGTTCTAA GAACTCGGGCCGACCAACAAAGAGCATCCGACATGTTTCTGGCCATGTCT CCCCTTCATCTCCGCCTACTTTGACTTCAAGCGCTGGACGCTGCTGGCGA TCTACTAATATGTTCAGGGTTGGGGTTGGACAAGCGCTCTCTTCCTCGTC TCTAGCACACACTTTCTTCGTCGTCAAGCAGCATACGGTGGCGACCATGT ATTTCAACACTTCTTCTCCTTCTATTGCTATGCACGCTCATAATTTCGTG TAGTCTTGATGATAGCAGCATTAGGCACACTCTTCCTCTCTTGCGCTTGC CGTCGAATATTTCCAAACAGATAGGTACTGAGTGACAGTGTAACAACAAC TCGGGCCCGGCGGTGCCTGCTAGACGACACGAAACAAAAGCGTCGTGTTC GTCCCGTATCGCACTTTGTATCGTCTTGCGATTCTGGTGACGTTCGATTC GTTTGCCCCTCTTCCTTGTCGGACATATCCCGTTCATCGGTGCCCCTGAC CTGAAGCTTAATCAGCTGTGATATTTCAGCACCTACATGTCTGCCTCTCC CTCTGTGGCAATCGCTTAGGCTACGACGGTGGCGACTGCTGCTCTTGCAC ATGCCAGAGCGCGTATGATGACGACTACTCTTGCAGCAGCGAGTACGGCT ACTTCGACTGCCAAGACCCTAGCGCCTCCTGCTTCGGCGAAGGAACAACG AGGAGCGATGACTTCACCTTCGACGACGACGACGAGACAATGTCGTACGA ATTCGTCACCTGGAAAGAGACGGAGTCCCTGCCGATGGTCATCGACGCCG TCGAGGTGGGCACCAAGACCGAGGTTGGCGTATCGGCCACCGCCCATGAT GTGCGGCCCGGCAGCAGCGGCGACGACGTCGGGTGCGGAGAGGTCGGTGG TCTTGGCTGCGCGGCTACCAACACCCGTGATGGCATCTTCTCCGACATCG AGTCGAGGTGGTCGTGCGCCACGAGCCTTGTGCCTGACGAAGGCCCCTGC CAGATCGAGTTCTTTTTCGCCGAACCGCAGAACATCGTGGACATCCAGGT CGCCTTCTGGAAGGGCAATGAGCGCACCCGTACCCTAAAGGTGAGGACAA AACCATCCCGTTACTGTTGGCCCCAACAGCACTTTTGCCACAGTGATTCG CTGGACGGACTCCCTCTATGGCATCCATTCAGAAAAGCGTGGAAGTTCTG GCCGCACATGGTCTTTGAGTGGCGAAAGTATACACGCCGCGTTCTGTAAA TATACCTCCAAGCGGATTTTCTTGTCCAATCATTCCCCCCCACGGCGGCG CTCGAAGCTAGTGTTCGTCGGTTTTGCACGCAAACCTTCCCCATACAGGT CCACGTCGACGGTGAGCTGACCCACACGCACGAGTTCTACACCGATTCCA CCTTCAGCACGCTCGGTGTGACAGCCATTGAGGCCAACACTGTGATGCTC GAGTCCGTCGCTCTCCTTTCGGACGAATGGATCAGTCTTGTCGAGGTGAG CGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7895:2754..4907-

>mRNA_Ecto-sp13_S_contig7895.19170.1 ID=mRNA_Ecto-sp13_S_contig7895.19170.1|Name=mRNA_Ecto-sp13_S_contig7895.19170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7895:2754..4907- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGACGACTACTCTTGCAGCAGCGAGTACGGCTACTTCGACTGCCAA
GACCCTAGCGCCTCCTGCTTCGGCGAAGGAACAACGAGGAGCGATGACTT
CACCTTCGACGACGACGACGAGACAATGTCGTACGAATTCGTCACCTGGA
AAGAGACGGAGTCCCTGCCGATGGTCATCGACGCCGTCGAGGTGGGCACC
AAGACCGAGGTTGGCGTATCGGCCACCGCCCATGATGTGCGGCCCGGCAG
CAGCGGCGACGACGTCGGGTGCGGAGAGGTCGGTGGTCTTGGCTGCGCGG
CTACCAACACCCGTGATGGCATCTTCTCCGACATCGAGTCGAGGTGGTCG
TGCGCCACGAGCCTTGTGCCTGACGAAGGCCCCTGCCAGATCGAGTTCTT
TTTCGCCGAACCGCAGAACATCGTGGACATCCAGGTCGCCTTCTGGAAGG
GCAATGAGCGCACCCGTACCCTAA
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